Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007385.1

Orthogroup ID

OG0031387

Physical Location & Seq

Genomic Coordinates Reverse (-)

117963 .. 121844

Gene Structure 3882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007385.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggaaatggggggtcagagctgcaaaaagatgaaaatggtggggcgggggtcagaatcacagaaagatggaaatgggagatgcaaaatctcaaatgggacttctggtaaagatgctaaactagtggaaagctccggcagcacaattgatggtaatactcttttccccctctctggatttacatgtcgtattgtcatgggactctttgggaaggctgttcctaagacggcagaaaatttccgagctctttgcacaggggagaaaggcattggaaagagcggaaaacctctccattacaagggtagcaaatttcacaggattattcccagcttcatgcttcagggaggtgatttcactctcggtgacggaagaggtggagaatcaatttatggagagaagtttgctgatgagaatttcaagttgaagcatactagaccagggcttttgtcgatggcaaatgctgggccagacaccaatggttcacaattcttcatcaccactgtgacaactagctggttggatggcagacatgttgtatttggaaaggtgctgtctggcatggatgtggtttacaaggttgaagctgaaggaagtcagggtggaacacccaagagcaaagttgtgatcgctgacagtggcgaacttcctctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

217

Amino Acids

23.0

Weight (kDa)

9.33

Isoelectric Point (pI)

17.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031387)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007385.1_g000027
rosa_samantha	Rh5CG497100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AciI	CCGC	2 cut(s)	46, 279
AcsI	RAATTY	3 cut(s)	235, 308, 412
AcuI	CTGAAG	2 cut(s)	323, 606
AfiI	CCNNNNNNNGG	2 cut(s)	173, 298
AflIII	ACRYGT	2 cut(s)	182, 529
AgsI	TTSAA	3 cut(s)	418, 424, 581
AhlI	ACTAGT	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	436
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	6 cut(s)	21, 132, 245, 330, 513, 584
AluI	AGCT	6 cut(s)	21, 132, 245, 330, 513, 584
Alw21I	GWGCWC	1 cut(s)	247
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	2 cut(s)	21, 138
ApoI	RAATTY	3 cut(s)	235, 308, 412
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	3 cut(s)	359, 374, 487
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	8, 150
BccI	CCATC	4 cut(s)	62, 143, 445, 515
BceAI	ACGGC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BciT130I	CCWGG	1 cut(s)	438
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	3 cut(s)	122, 432, 510
BisI	GCNGC	2 cut(s)	22, 139
BlsI	GCNGC	2 cut(s)	23, 140
Bme1390I	CCNGG	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	71, 103
BsaJI	CCNNGG	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 298
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	526, 568
BseLI	CCNNNNNNNGG	2 cut(s)	173, 298
BseXI	GCAGC	2 cut(s)	8, 150
BseYI	CCCAGC	2 cut(s)	326, 461
BshFI	GGCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	112, 213
BslI	CCNNNNNNNGG	2 cut(s)	173, 298
BsmFI	GGGAC	2 cut(s)	112, 213
BsnI	GGCC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	624
BspACI	CCGC	2 cut(s)	46, 279
BspANI	GGCC	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	502, 635
Bst6I	CTCTTC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	526, 568
BstKTI	GATC	1 cut(s)	627
BstMBI	GATC	1 cut(s)	624
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	2 cut(s)	186, 533
BstSCI	CCNGG	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	8, 150
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	526, 568
BtsIMutI	CAGTG	2 cut(s)	498, 640
Cfr13I	GGNCC	1 cut(s)	464
CviAII	CATG	5 cut(s)	183, 196, 334, 530, 559
CviJI	RGCY	9 cut(s)	21, 132, 215, 245, 330, 442, 466, 513, 584
CviKI_1	RGCY	9 cut(s)	21, 132, 215, 245, 330, 442, 466, 513, 584
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	323, 606
EcoICRI	GAGCTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	247
FaeI	CATG	5 cut(s)	186, 199, 337, 533, 562
FaiI	YATR	7 cut(s)	184, 197, 335, 390, 429, 531, 560
FaqI	GGGAC	2 cut(s)	112, 213
FatI	CATG	5 cut(s)	182, 195, 333, 529, 558
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	22, 139
FokI	GGATG	2 cut(s)	533, 575
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	22, 139
FspBI	CTAG	3 cut(s)	122, 432, 510
GluI	GCNGC	2 cut(s)	22, 139
GsaI	CCCAGC	2 cut(s)	330, 465
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	5 cut(s)	186, 199, 337, 533, 562
HinfI	GANTC	3 cut(s)	56, 201, 380
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	359, 374, 487
Hpy166II	GTNNAC	2 cut(s)	482, 571
Hpy188I	TCNGA	3 cut(s)	18, 55, 242
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	2 cut(s)	482, 571
HpyAV	CCTTC	2 cut(s)	205, 581
HpyCH4III	ACNGT	2 cut(s)	502, 635
HpyCH4V	TGCA	3 cut(s)	24, 84, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	5 cut(s)	186, 199, 337, 533, 562
Kzo9I	GATC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	2 cut(s)	8, 150
LweI	GCATC	2 cut(s)	71, 103
MaeI	CTAG	3 cut(s)	122, 432, 510
MaeIII	GTNAC	2 cut(s)	362, 502
MalI	GATC	1 cut(s)	626
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	1 cut(s)	624
MboII	GAAGA	2 cut(s)	381, 481
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	6 cut(s)	144, 235, 308, 384, 412, 485
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	4 cut(s)	179, 297, 338, 365
MseI	TTAA	1 cut(s)	652
MslI	CAYNNNNRTG	2 cut(s)	500, 563
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	438
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	5 cut(s)	186, 199, 337, 533, 562
NmuCI	GTSAC	2 cut(s)	362, 502
NspI	RCATGY	2 cut(s)	186, 533
OliI	CACNNNNGTG	1 cut(s)	500
PciI	ACATGT	2 cut(s)	182, 529
PfeI	GAWTC	2 cut(s)	56, 380
PkrI	GCNGC	2 cut(s)	23, 140
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PscI	ACATGT	2 cut(s)	182, 529
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	2 cut(s)	326, 461
PspGI	CCWGG	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	464
RseI	CAYNNNNRTG	2 cut(s)	500, 563
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	2 cut(s)	22, 139
Sau3AI	GATC	1 cut(s)	624
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	71, 103
SmiMI	CAYNNNNRTG	2 cut(s)	500, 563
SpeI	ACTAGT	1 cut(s)	121
Sse9I	AATT	6 cut(s)	144, 235, 308, 384, 412, 485
SsiI	CCGC	2 cut(s)	46, 279
SspMI	CTAG	3 cut(s)	122, 432, 510
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	502, 635
TaqI	TCGA	1 cut(s)	449
TasI	AATT	6 cut(s)	144, 235, 308, 384, 412, 485
TfiI	GAWTC	2 cut(s)	56, 380
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TscAI	CASTG	2 cut(s)	505, 640
TseFI	GTSAC	2 cut(s)	362, 502
TseI	GCWGC	2 cut(s)	21, 138
Tsp45I	GTSAC	2 cut(s)	362, 502
TspDTI	ATGAA	3 cut(s)	47, 322, 481
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	505, 640
XapI	RAATTY	3 cut(s)	235, 308, 412
XceI	RCATGY	2 cut(s)	186, 533
XspI	CTAG	3 cut(s)	122, 432, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.