Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0031387

Physical Location & Seq

Genomic Coordinates Reverse (-)

69134955 .. 69198875

Gene Structure 63921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG497100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAAATGGGGGGTCAGAGCTGCAAAAAGATGAAAATGGTGGGGCGGGTGTCAGAATCACAGAAAGATGGAAATGGGAGATGCAAAATCTCAAATGGGACTTCTGGTAAAGATGCTAAACTAGTGGAAAGCTCTGGCAGCACAATTGATGGTCGTATTGTCATGGGACTCTTTGGGAAGGCTGTTCCTAAGACGGCAGAAAATTTCCGAGCTCTTTGCACAGGGGAGAAAGGCATTGGAAAGAGCGGAAAACCTCTCCATTACAAGGGTAGCAAATTTCACAGGATTATTCCCAGCTTCATGCTTCAGGGAGGTGATTTCACTCTCGGAGACGGAAGAGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGAGAATTTCAAGTTGAAGCATACTGGACCAGGGCTTTTGTCGATGGCAAATGCTGGGCCAGACACCAATGGTTCACAATTCTTCATCACCACTGTGACAACTAGCTGGTTGGATGGCAGACATGTTGTATTTGGAAAGGTGCTGTCTGGCATGGATGTGGTTTACAAGGTTGAAGCTGAAGGAAGTCAGGGTGGAACACCCAAGGGCAAAGTTGTGATCTCTGACAGTGGCGAACTTCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

206

Amino Acids

21.74

Weight (kDa)

9.3

Isoelectric Point (pI)

16.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	50 - 200	5.1e-46	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0031387)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007385.1_g000027
rosa_samantha	Rh5CG497100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	246
AciI	CCGC	2 cut(s)	46, 246
AcsI	RAATTY	3 cut(s)	202, 275, 379
AcuI	CTGAAG	2 cut(s)	290, 573
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	3 cut(s)	385, 391, 548
AhlI	ACTAGT	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	403
AleI	CACNNNNGTG	1 cut(s)	467
AluBI	AGCT	6 cut(s)	21, 132, 212, 297, 480, 551
AluI	AGCT	6 cut(s)	21, 132, 212, 297, 480, 551
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	324
AoxI	GGCC	1 cut(s)	431
ApeKI	GCWGC	2 cut(s)	21, 138
ApoI	RAATTY	3 cut(s)	202, 275, 379
AspS9I	GGNCC	2 cut(s)	401, 431
AsuHPI	GGTGA	2 cut(s)	326, 454
AvaII	GGWCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	8, 150
BccI	CCATC	4 cut(s)	62, 143, 412, 482
BceAI	ACGGC	1 cut(s)	210
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	324
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	2 cut(s)	122, 477
BisI	GCNGC	2 cut(s)	22, 139
BlsI	GCNGC	2 cut(s)	23, 140
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	401, 431
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	71, 103
BsaJI	CCNNGG	2 cut(s)	404, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	404, 576
BseGI	GGATG	2 cut(s)	493, 535
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	8, 150
BseYI	CCCAGC	2 cut(s)	293, 428
BshFI	GGCC	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	214
BslFI	GGGAC	2 cut(s)	112, 180
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	324
BsmBI	CGTCTC	1 cut(s)	324
BsmFI	GGGAC	2 cut(s)	112, 180
BsnI	GGCC	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	591
BspACI	CCGC	2 cut(s)	46, 246
BspANI	GGCC	1 cut(s)	433
BsrBI	CCGCTC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	404, 576
BssMI	GATC	1 cut(s)	591
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	469, 602
Bst6I	CTCTTC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	493, 535
BstKTI	GATC	1 cut(s)	594
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	8, 150
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	493, 535
BtsIMutI	CAGTG	2 cut(s)	465, 607
Cfr13I	GGNCC	2 cut(s)	401, 431
CviAII	CATG	4 cut(s)	163, 301, 497, 526
CviJI	RGCY	9 cut(s)	21, 132, 182, 212, 297, 409, 433, 480, 551
CviKI_1	RGCY	9 cut(s)	21, 132, 182, 212, 297, 409, 433, 480, 551
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	401
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	2 cut(s)	290, 573
EcoICRI	GAGCTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	4 cut(s)	166, 304, 500, 529
FaiI	YATR	6 cut(s)	164, 302, 357, 396, 498, 527
FaqI	GGGAC	2 cut(s)	112, 180
FatI	CATG	4 cut(s)	162, 300, 496, 525
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	22, 139
FokI	GGATG	2 cut(s)	500, 542
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	2 cut(s)	22, 139
FspBI	CTAG	2 cut(s)	122, 477
GluI	GCNGC	2 cut(s)	22, 139
GsaI	CCCAGC	2 cut(s)	297, 432
HaeIII	GGCC	1 cut(s)	433
Hin1II	CATG	4 cut(s)	166, 304, 500, 529
HinfI	GANTC	3 cut(s)	56, 168, 347
HphI	GGTGA	2 cut(s)	326, 454
Hpy166II	GTNNAC	2 cut(s)	449, 538
Hpy188I	TCNGA	5 cut(s)	18, 55, 209, 329, 598
Hpy8I	GTNNAC	2 cut(s)	449, 538
HpyAV	CCTTC	2 cut(s)	172, 548
HpyCH4III	ACNGT	2 cut(s)	469, 602
HpyCH4V	TGCA	3 cut(s)	24, 84, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	4 cut(s)	166, 304, 500, 529
Kzo9I	GATC	1 cut(s)	591
Lsp1109I	GCAGC	2 cut(s)	8, 150
LweI	GCATC	2 cut(s)	71, 103
MaeI	CTAG	2 cut(s)	122, 477
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	1 cut(s)	593
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	1 cut(s)	591
MboII	GAAGA	2 cut(s)	348, 448
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	6 cut(s)	144, 202, 275, 351, 379, 452
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	3 cut(s)	264, 305, 332
MseI	TTAA	1 cut(s)	619
MslI	CAYNNNNRTG	2 cut(s)	467, 530
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	4 cut(s)	166, 304, 500, 529
NmuCI	GTSAC	1 cut(s)	469
NspI	RCATGY	1 cut(s)	500
OliI	CACNNNNGTG	1 cut(s)	467
PciI	ACATGT	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	56, 347
PkrI	GCNGC	2 cut(s)	23, 140
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PscI	ACATGT	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	403
PspFI	CCCAGC	2 cut(s)	293, 428
PspGI	CCWGG	1 cut(s)	403
PspPI	GGNCC	2 cut(s)	401, 431
RseI	CAYNNNNRTG	2 cut(s)	467, 530
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	619
SatI	GCNGC	2 cut(s)	22, 139
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	2 cut(s)	401, 431
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	71, 103
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	467, 530
SpeI	ACTAGT	1 cut(s)	121
Sse9I	AATT	6 cut(s)	144, 202, 275, 351, 379, 452
SsiI	CCGC	2 cut(s)	46, 246
SspMI	CTAG	2 cut(s)	122, 477
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	469, 602
TaqI	TCGA	1 cut(s)	416
TasI	AATT	6 cut(s)	144, 202, 275, 351, 379, 452
TfiI	GAWTC	2 cut(s)	56, 347
Tru1I	TTAA	1 cut(s)	619
Tru9I	TTAA	1 cut(s)	619
TscAI	CASTG	2 cut(s)	472, 607
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	2 cut(s)	21, 138
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	47, 289, 448
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	472, 607
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	3 cut(s)	202, 275, 379
XceI	RCATGY	1 cut(s)	500
XspI	CTAG	2 cut(s)	122, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.