Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007385.1

Orthogroup ID

OG0031387

Physical Location & Seq

Genomic Coordinates Reverse (-)

117963 .. 121844

Gene Structure 3882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggaaatggggggtcagagctgcaaaaagatgaaaatggtggggcgggggtcagaatcacagaaagatggaaatgggagatgcaaaatctcaaatgggacttctggtaaagatgctaaactagtggaaagctccggcagcacaattgatggtaatactcttttccccctctctggatttacatgtcgtattgtcatgggactctttgggaaggctgttcctaagacggcagaaaatttccgagctctttgcacaggggagaaaggcattggaaagagcggaaaacctctccattacaagggtagcaaatttcacaggattattcccagcttcatgcttcagggaggtgatttcactctcggtgacggaagaggtggagaatcaatttatggagagaagtttgctgatgagaatttcaagttgaagcatactagaccagggcttttgtcgatggcaaatgctgggccagacaccaatggttcacaattcttcatcaccactgtgacaactagctggttggatggcagacatgttgtatttggaaaggtgctgtctggcatggatgtggtttacaaggttgaagctgaaggaagtcagggtggaacacccaagagcaaagttgtgatcgctgacagtggcgaacttcctctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

217

Amino Acids

23.0

Weight (kDa)

9.33

Isoelectric Point (pI)

17.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	63 - 211	3.3e-45	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031387)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007385.1_g000027
rosa_samantha	Rh5CG497100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AciI	CCGC	2 cut(s)	46, 279
AcsI	RAATTY	3 cut(s)	235, 308, 412
AcuI	CTGAAG	2 cut(s)	323, 606
AfiI	CCNNNNNNNGG	2 cut(s)	173, 298
AflIII	ACRYGT	2 cut(s)	182, 529
AgsI	TTSAA	3 cut(s)	418, 424, 581
AhlI	ACTAGT	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	436
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	6 cut(s)	21, 132, 245, 330, 513, 584
AluI	AGCT	6 cut(s)	21, 132, 245, 330, 513, 584
Alw21I	GWGCWC	1 cut(s)	247
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	2 cut(s)	21, 138
ApoI	RAATTY	3 cut(s)	235, 308, 412
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	3 cut(s)	359, 374, 487
BanII	GRGCYC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	8, 150
BccI	CCATC	4 cut(s)	62, 143, 445, 515
BceAI	ACGGC	1 cut(s)	243
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BciT130I	CCWGG	1 cut(s)	438
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	3 cut(s)	122, 432, 510
BisI	GCNGC	2 cut(s)	22, 139
BlsI	GCNGC	2 cut(s)	23, 140
Bme1390I	CCNGG	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	71, 103
BsaJI	CCNNGG	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 298
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	2 cut(s)	526, 568
BseLI	CCNNNNNNNGG	2 cut(s)	173, 298
BseXI	GCAGC	2 cut(s)	8, 150
BseYI	CCCAGC	2 cut(s)	326, 461
BshFI	GGCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	112, 213
BslI	CCNNNNNNNGG	2 cut(s)	173, 298
BsmFI	GGGAC	2 cut(s)	112, 213
BsnI	GGCC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	624
BspACI	CCGC	2 cut(s)	46, 279
BspANI	GGCC	1 cut(s)	466
BsrBI	CCGCTC	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	502, 635
Bst6I	CTCTTC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	526, 568
BstKTI	GATC	1 cut(s)	627
BstMBI	GATC	1 cut(s)	624
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	2 cut(s)	186, 533
BstSCI	CCNGG	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	8, 150
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	526, 568
BtsIMutI	CAGTG	2 cut(s)	498, 640
Cfr13I	GGNCC	1 cut(s)	464
CviAII	CATG	5 cut(s)	183, 196, 334, 530, 559
CviJI	RGCY	9 cut(s)	21, 132, 215, 245, 330, 442, 466, 513, 584
CviKI_1	RGCY	9 cut(s)	21, 132, 215, 245, 330, 442, 466, 513, 584
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	626
DpnII	GATC	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	323, 606
EcoICRI	GAGCTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	247
FaeI	CATG	5 cut(s)	186, 199, 337, 533, 562
FaiI	YATR	7 cut(s)	184, 197, 335, 390, 429, 531, 560
FaqI	GGGAC	2 cut(s)	112, 213
FatI	CATG	5 cut(s)	182, 195, 333, 529, 558
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	22, 139
FokI	GGATG	2 cut(s)	533, 575
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	22, 139
FspBI	CTAG	3 cut(s)	122, 432, 510
GluI	GCNGC	2 cut(s)	22, 139
GsaI	CCCAGC	2 cut(s)	330, 465
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	5 cut(s)	186, 199, 337, 533, 562
HinfI	GANTC	3 cut(s)	56, 201, 380
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	359, 374, 487
Hpy166II	GTNNAC	2 cut(s)	482, 571
Hpy188I	TCNGA	3 cut(s)	18, 55, 242
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	2 cut(s)	482, 571
HpyAV	CCTTC	2 cut(s)	205, 581
HpyCH4III	ACNGT	2 cut(s)	502, 635
HpyCH4V	TGCA	3 cut(s)	24, 84, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	5 cut(s)	186, 199, 337, 533, 562
Kzo9I	GATC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	2 cut(s)	8, 150
LweI	GCATC	2 cut(s)	71, 103
MaeI	CTAG	3 cut(s)	122, 432, 510
MaeIII	GTNAC	2 cut(s)	362, 502
MalI	GATC	1 cut(s)	626
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	1 cut(s)	624
MboII	GAAGA	2 cut(s)	381, 481
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	6 cut(s)	144, 235, 308, 384, 412, 485
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	4 cut(s)	179, 297, 338, 365
MseI	TTAA	1 cut(s)	652
MslI	CAYNNNNRTG	2 cut(s)	500, 563
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	438
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	1 cut(s)	624
NlaIII	CATG	5 cut(s)	186, 199, 337, 533, 562
NmuCI	GTSAC	2 cut(s)	362, 502
NspI	RCATGY	2 cut(s)	186, 533
OliI	CACNNNNGTG	1 cut(s)	500
PciI	ACATGT	2 cut(s)	182, 529
PfeI	GAWTC	2 cut(s)	56, 380
PkrI	GCNGC	2 cut(s)	23, 140
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PscI	ACATGT	2 cut(s)	182, 529
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	436
PspFI	CCCAGC	2 cut(s)	326, 461
PspGI	CCWGG	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	464
RseI	CAYNNNNRTG	2 cut(s)	500, 563
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	652
SatI	GCNGC	2 cut(s)	22, 139
Sau3AI	GATC	1 cut(s)	624
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	2 cut(s)	71, 103
SmiMI	CAYNNNNRTG	2 cut(s)	500, 563
SpeI	ACTAGT	1 cut(s)	121
Sse9I	AATT	6 cut(s)	144, 235, 308, 384, 412, 485
SsiI	CCGC	2 cut(s)	46, 279
SspMI	CTAG	3 cut(s)	122, 432, 510
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	502, 635
TaqI	TCGA	1 cut(s)	449
TasI	AATT	6 cut(s)	144, 235, 308, 384, 412, 485
TfiI	GAWTC	2 cut(s)	56, 380
Tru1I	TTAA	1 cut(s)	652
Tru9I	TTAA	1 cut(s)	652
TscAI	CASTG	2 cut(s)	505, 640
TseFI	GTSAC	2 cut(s)	362, 502
TseI	GCWGC	2 cut(s)	21, 138
Tsp45I	GTSAC	2 cut(s)	362, 502
TspDTI	ATGAA	3 cut(s)	47, 322, 481
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	505, 640
XapI	RAATTY	3 cut(s)	235, 308, 412
XceI	RCATGY	2 cut(s)	186, 533
XspI	CTAG	3 cut(s)	122, 432, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.