Rmu_sc0007406.1_g000016

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007406.1
OG0030520
Physical Location & Seq
Forward (+)
44437 .. 47926
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007406.1_g000016.1.cds

Sequence Viewer

Length: 744 bp
atgggtttcttcggaaagggcttggctttgggattcggagagaggtgggtcttgttcgttgaggcggttgagtttgcggttgtgtttctggatttgtttcttgcggagagtgtggacgattttgggagttgggtgtacgcctttgttggtgaggttgcgtttgatttgtcagtgctggcgctttcttcccaggattcgggattcattgaactcactaaagaagatatttatcgagttggctgggctagatatgcagagccgtacttgtgggaggggttgtcacttgctgcagacttcactattaacttctccttccttgtggacactcttaacaggagctcaattggtgatgggatttccttcttcctcgcttcggtccactatcaaattccacccaactcctgcgtcctttcctatgagcggcatgctatacgttcatgggaattcagtagttcagaaataaagtctgatgcgagccgaaggaggatagtcttgaagattggggtcgctgcagcagcagttcttttctttattttgaagctttatgtcgcctaccggtgggtcgtacggaagcggataaagaggactcgtggagatagcattgagtcgaatgacacctccagtgttgcattgtcctccataaattcagatcttcagatactagccttgccaagacaatttacttatcaagaactagttgcttccgtacgacccaccggtaggcgacataaagcttcaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

247

Amino Acids

27.8

Weight (kDa)

6.85

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030520)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0222171
rosa_multiflora Rmu_sc0007406.1_g000016

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 421
AciI CCGC 5 cut(s) 65, 77, 104, 421, 574
AcsI RAATTY 3 cut(s) 387, 443, 643
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 4 cut(s) 137, 263, 567, 708
AfiI CCNNNNNNNGG 5 cut(s) 196, 373, 420, 558, 720
AgeI ACCGGT 2 cut(s) 555, 716
AgsI TTSAA 4 cut(s) 209, 496, 538, 738
AhlI ACTAGT 1 cut(s) 694
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 3 cut(s) 339, 541, 734
AluI AGCT 3 cut(s) 339, 541, 734
Alw21I GWGCWC 1 cut(s) 341
ApeKI GCWGC 4 cut(s) 287, 509, 512, 515
ApoI RAATTY 3 cut(s) 387, 443, 643
AsiGI ACCGGT 2 cut(s) 555, 716
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 161, 359
AvaII GGWCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 341
BauI CACGAG 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 4 cut(s) 274, 496, 524, 527
BccI CCATC 1 cut(s) 344
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 694
BfaI CTAG 3 cut(s) 246, 662, 695
BfmI CTRYAG 2 cut(s) 288, 510
BfoI RGCGCY 1 cut(s) 182
BglII AGATCT 1 cut(s) 649
BisI GCNGC 5 cut(s) 288, 422, 510, 513, 516
BlsI GCNGC 5 cut(s) 289, 423, 511, 514, 517
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 460
BpmI CTGGAG 1 cut(s) 604
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 189
BsaWI WCCGGW 2 cut(s) 555, 716
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 5 cut(s) 196, 373, 420, 558, 720
Bse118I RCCGGY 2 cut(s) 555, 716
Bse1I ACTGG 1 cut(s) 621
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 189
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 5 cut(s) 196, 373, 420, 558, 720
BseNI ACTGG 1 cut(s) 621
BseXI GCAGC 4 cut(s) 274, 496, 524, 527
BseYI CCCAGC 1 cut(s) 240
BshTI ACCGGT 2 cut(s) 555, 716
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 2 cut(s) 556, 717
BsiWI CGTACG 2 cut(s) 565, 706
BslI CCNNNNNNNGG 5 cut(s) 196, 373, 420, 558, 720
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 1 cut(s) 649
BspACI CCGC 5 cut(s) 65, 77, 104, 421, 574
BspMAI CTGCAG 2 cut(s) 292, 514
BsrBI CCGCTC 1 cut(s) 421
BsrFI RCCGGY 2 cut(s) 555, 716
BsrI ACTGG 1 cut(s) 621
BssAI RCCGGY 2 cut(s) 555, 716
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 649
BssSI CACGAG 1 cut(s) 588
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 177, 426, 475
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 652
BstMBI GATC 1 cut(s) 649
BstMWI GCNNNNNNNGC 2 cut(s) 251, 515
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 288, 510
BstV1I GCAGC 4 cut(s) 274, 496, 524, 527
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BtsIMutI CAGTG 2 cut(s) 177, 628
Cac8I GCNNGC 3 cut(s) 177, 426, 475
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 2 cut(s) 555, 716
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 1 cut(s) 394
Csp6I GTAC 4 cut(s) 136, 262, 566, 707
CspAI ACCGGT 2 cut(s) 555, 716
CviAII CATG 2 cut(s) 425, 438
CviQI GTAC 4 cut(s) 136, 262, 566, 707
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
Ecl136II GAGCTC 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 341
FaeI CATG 2 cut(s) 428, 441
FaiI YATR 8 cut(s) 252, 417, 426, 431, 439, 546, 641, 729
FatI CATG 2 cut(s) 424, 437
Fnu4HI GCNGC 5 cut(s) 288, 422, 510, 513, 516
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 5 cut(s) 288, 422, 510, 513, 516
FspBI CTAG 3 cut(s) 246, 662, 695
GlaI GCGC 1 cut(s) 180
GluI GCNGC 5 cut(s) 288, 422, 510, 513, 516
GsaI CCCAGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 604
HaeII RGCGCY 1 cut(s) 182
HapII CCGG 2 cut(s) 556, 717
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 181
Hin1II CATG 2 cut(s) 428, 441
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HindIII AAGCTT 2 cut(s) 539, 732
HinfI GANTC 5 cut(s) 33, 194, 201, 586, 605
HpaII CCGG 2 cut(s) 556, 717
HphI GGTGA 2 cut(s) 161, 359
Hpy166II GTNNAC 4 cut(s) 115, 136, 322, 379
Hpy188I TCNGA 6 cut(s) 14, 38, 457, 469, 649, 657
Hpy188III TCNNGA 4 cut(s) 89, 198, 493, 689
Hpy8I GTNNAC 4 cut(s) 115, 136, 322, 379
HpyAV CCTTC 3 cut(s) 322, 370, 474
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 4 cut(s) 254, 290, 512, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 515
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 2 cut(s) 428, 441
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 1 cut(s) 649
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 4 cut(s) 274, 496, 524, 527
LweI GCATC 1 cut(s) 460
MaeI CTAG 3 cut(s) 246, 662, 695
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 1 cut(s) 279
MalI GATC 1 cut(s) 651
MbiI CCGCTC 1 cut(s) 421
MboI GATC 1 cut(s) 649
MboII GAAGA 5 cut(s) 177, 233, 355, 508, 644
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 5 cut(s) 342, 387, 443, 643, 677
MlyI GAGTC 2 cut(s) 580, 614
MnlI CCTC 9 cut(s) 36, 55, 145, 265, 377, 477, 576, 628, 646
MseI TTAA 2 cut(s) 303, 330
MspI CCGG 2 cut(s) 556, 717
MspR9I CCNGG 1 cut(s) 191
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 251, 515
NdeII GATC 1 cut(s) 649
NlaIII CATG 2 cut(s) 428, 441
NmuCI GTSAC 1 cut(s) 279
NspI RCATGY 1 cut(s) 428
PaeI GCATGC 1 cut(s) 428
PfeI GAWTC 3 cut(s) 33, 194, 201
Pfl23II CGTACG 2 cut(s) 565, 706
PinAI ACCGGT 2 cut(s) 555, 716
PkrI GCNGC 5 cut(s) 289, 423, 511, 514, 517
PleI GAGTC 2 cut(s) 580, 613
PpsI GAGTC 2 cut(s) 580, 613
Psp124BI GAGCTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 1 cut(s) 189
PspLI CGTACG 2 cut(s) 565, 706
PspPI GGNCC 1 cut(s) 376
PstI CTGCAG 2 cut(s) 292, 514
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 4 cut(s) 137, 263, 567, 708
RsaNI GTAC 4 cut(s) 136, 262, 566, 707
SacI GAGCTC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 303, 330
SatI GCNGC 5 cut(s) 288, 422, 510, 513, 516
Sau3AI GATC 1 cut(s) 649
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 2 cut(s) 580, 614
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 341
SetI ASST 7 cut(s) 47, 156, 341, 436, 543, 620, 736
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 2 cut(s) 288, 510
SinI GGWCC 1 cut(s) 376
SpeI ACTAGT 1 cut(s) 694
SphI GCATGC 1 cut(s) 428
Sse9I AATT 5 cut(s) 342, 387, 443, 643, 677
SsiI CCGC 5 cut(s) 65, 77, 104, 421, 574
SspMI CTAG 3 cut(s) 246, 662, 695
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 232, 608
TaqII GACCGA 1 cut(s) 364
TasI AATT 5 cut(s) 342, 387, 443, 643, 677
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 3 cut(s) 33, 194, 201
Tru1I TTAA 2 cut(s) 303, 330
Tru9I TTAA 2 cut(s) 303, 330
TscAI CASTG 2 cut(s) 177, 628
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 4 cut(s) 287, 509, 512, 515
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 2 cut(s) 193, 426
TspGWI ACGGA 2 cut(s) 583, 694
TspRI CASTG 2 cut(s) 177, 628
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 3 cut(s) 387, 443, 643
XceI RCATGY 1 cut(s) 428
XspI CTAG 3 cut(s) 246, 662, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.