Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007532.1

Orthogroup ID

OG0031390

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 346

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007532.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 238 bp

atggcggtcaaaagggtccgctctgagctccaagtgaaagtcaacggctctctctccgctgctgactccgaccaactcttcctcgaccgccaaaaagcactggaggcggccatgaatgatatcaatagctcattcggcaagggaagtgttacaagactaggaagcgctggcggagctttggttgaaactttccccagtggttgcttgacattggaccttgccttaggtggtggcctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

79

Amino Acids

8.11

Weight (kDa)

6.1

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031390)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007532.1_g000001
rosa_samantha	Rh3DG323800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	21
AciI	CCGC	6 cut(s)	5, 19, 57, 88, 107, 171
AcoI	YGGCCR	1 cut(s)	108
AfeI	AGCGCT	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	3 cut(s)	28, 129, 176
AluI	AGCT	3 cut(s)	28, 129, 176
Alw21I	GWGCWC	1 cut(s)	30
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	2 cut(s)	108, 232
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	16, 214
AvaII	GGWCC	2 cut(s)	16, 214
AxyI	CCTNAGG	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	2 cut(s)	60, 108
BlsI	GCNGC	2 cut(s)	61, 109
Bme18I	GGWCC	2 cut(s)	16, 214
BmgT120I	GGNCC	2 cut(s)	16, 214
BmiI	GGNNCC	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse1I	ACTGG	2 cut(s)	105, 195
Bse21I	CCTNAGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	105, 195
BseXI	GCAGC	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	110, 234
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	30
BsnI	GGCC	2 cut(s)	110, 234
Bsp1286I	GDGCHC	1 cut(s)	30
BspACI	CCGC	6 cut(s)	5, 19, 57, 88, 107, 171
BspANI	GGCC	2 cut(s)	110, 234
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	105, 195
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	24, 223
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 135, 173
BstV1I	GCAGC	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	110, 234
BtsIMutI	CAGTG	2 cut(s)	98, 202
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	16, 214
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	6 cut(s)	28, 48, 110, 129, 176, 234
CviKI_1	RGCY	6 cut(s)	28, 48, 110, 129, 176, 234
DdeI	CTNAG	2 cut(s)	24, 223
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	16, 214
Eco47III	AGCGCT	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	28
Eco81I	CCTNAGG	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	1 cut(s)	115
FaiI	YATR	1 cut(s)	113
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	60, 108
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	60, 108
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	60, 108
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	110, 234
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	25, 70
Hpy8I	GTNNAC	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 135, 173
HpyF3I	CTNAG	2 cut(s)	24, 223
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	33, 173
LpnPI	CCDG	3 cut(s)	86, 153, 208
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	148
MbiI	CCGCTC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	2 cut(s)	92, 97
MspA1I	CMGCKG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	104, 135, 173
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	61, 109
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	16, 214
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	60, 108
Sau96I	GGNCC	2 cut(s)	16, 214
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	30, 131, 178, 219, 229
SinI	GGWCC	2 cut(s)	16, 214
SsiI	CCGC	6 cut(s)	5, 19, 57, 88, 107, 171
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	30
TaqI	TCGA	1 cut(s)	84
TauI	GCSGC	1 cut(s)	110
TscAI	CASTG	2 cut(s)	105, 202
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	2 cut(s)	105, 202
VpaK11BI	GGWCC	2 cut(s)	16, 214
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.