Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0031390

Physical Location & Seq

Genomic Coordinates Reverse (-)

35315591 .. 35316650

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG323800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACATATTATATGTCCACCACCCACTCCCTCCCCTACTCACACTCTCCTCTCTCATTCCACTCCTGCTCTCTCCCACACCGACACCGCTTCAACGTTCAATCAATGGCGCTCAAAAGGGTCCGCTCTGAGCTCCAAGTGAAAGTCAACGGCTCTCTCTCCGCTGCTGACTCCGACCAACTCTTCCTCGACCGCCAAAAAGCACTGGAGGCGGCCATGAATGATATCAATAGCTCATTCGGCAAGGGAAGTGTTACAAGACTAGGAAGCGCTGGTGGAGCTTTGGTTGAAACTTTCCCCAGTGGTTGCTTGACATTGGACCTTGCCTTAGGTGGTGGCTTCCCAAAGGGGAGAATTGTAGAGTTGCAGATCGTATGTGCAGATCTGGTGCCATTGATCTTATCTGTGTCGATTCTGTCTCGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

142

Amino Acids

15.31

Weight (kDa)

8.93

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	67 - 122	2.6e-13	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0031390)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0007532.1_g000001
rosa_samantha	Rh3DG323800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	388
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	5 cut(s)	88, 124, 162, 193, 212
AclI	AACGTT	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	213
AfeI	AGCGCT	1 cut(s)	271
AgsI	TTSAA	3 cut(s)	94, 101, 290
AluBI	AGCT	3 cut(s)	133, 234, 281
AluI	AGCT	3 cut(s)	133, 234, 281
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	423
Aor51HI	AGCGCT	1 cut(s)	271
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	112, 272
AspS9I	GGNCC	2 cut(s)	121, 319
AvaII	GGWCC	2 cut(s)	121, 319
AxyI	CCTNAGG	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	263
BfoI	RGCGCY	2 cut(s)	113, 273
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	2 cut(s)	165, 213
BlsI	GCNGC	2 cut(s)	166, 214
Bme18I	GGWCC	2 cut(s)	121, 319
BmgT120I	GGNCC	2 cut(s)	121, 319
BmiI	GGNNCC	2 cut(s)	122, 390
BmrI	ACTGGG	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bse1I	ACTGG	2 cut(s)	210, 300
Bse21I	CCTNAGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	210, 300
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	369, 382, 396
BspACI	CCGC	5 cut(s)	88, 124, 162, 193, 212
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	122, 390
BspT107I	GGYRCC	1 cut(s)	388
BsrBI	CCGCTC	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	210, 300
BssMI	GATC	3 cut(s)	369, 382, 396
Bst6I	CTCTTC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	129, 328
BstH2I	RGCGCY	2 cut(s)	113, 273
BstHHI	GCGC	2 cut(s)	112, 272
BstKTI	GATC	3 cut(s)	372, 385, 399
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	3 cut(s)	369, 382, 396
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 240, 278
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu36I	CCTNAGG	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	215
BtsIMutI	CAGTG	2 cut(s)	203, 307
CfoI	GCGC	2 cut(s)	112, 272
Cfr13I	GGNCC	2 cut(s)	121, 319
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	7 cut(s)	133, 153, 215, 234, 281, 339, 424
CviKI_1	RGCY	7 cut(s)	133, 153, 215, 234, 281, 339, 424
DdeI	CTNAG	2 cut(s)	129, 328
DpnI	GATC	3 cut(s)	371, 384, 398
DpnII	GATC	3 cut(s)	369, 382, 396
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	121, 319
Eco47III	AGCGCT	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	133
Eco81I	CCTNAGG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	220
FaiI	YATR	5 cut(s)	7, 12, 14, 218, 376
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	165, 213
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	165, 213
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	2 cut(s)	111, 271
GluI	GCNGC	2 cut(s)	165, 213
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	2 cut(s)	113, 273
HaeIII	GGCC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	112, 272
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	2 cut(s)	110, 270
HinP1I	GCGC	2 cut(s)	110, 270
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	170, 412
Hpy166II	GTNNAC	2 cut(s)	18, 148
Hpy188I	TCNGA	2 cut(s)	130, 175
Hpy8I	GTNNAC	2 cut(s)	18, 148
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	367, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 240, 278
HpyF3I	CTNAG	2 cut(s)	129, 328
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	2 cut(s)	110, 270
Kzo9I	GATC	3 cut(s)	369, 382, 396
LmnI	GCTCC	2 cut(s)	138, 278
LpnPI	CCDG	5 cut(s)	79, 191, 258, 313, 371
Lsp1109I	GCAGC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	371, 384, 398
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	3 cut(s)	369, 382, 396
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	41, 60, 197, 202
MseI	TTAA	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	164
MwoI	GCNNNNNNNGC	3 cut(s)	209, 240, 278
NdeII	GATC	3 cut(s)	369, 382, 396
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	122, 390
NmeAIII	GCCGAG	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	166, 214
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	135
Psp1406I	AACGTT	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	122, 390
PspPI	GGNCC	2 cut(s)	121, 319
PsuI	RGATCY	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	2 cut(s)	165, 213
Sau3AI	GATC	3 cut(s)	369, 382, 396
Sau96I	GGNCC	2 cut(s)	121, 319
SchI	GAGTC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	6 cut(s)	99, 135, 236, 283, 324, 334
SinI	GGWCC	2 cut(s)	121, 319
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	5 cut(s)	88, 124, 162, 193, 212
SspMI	CTAG	1 cut(s)	263
SstI	GAGCTC	1 cut(s)	135
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	189, 410
TasI	AATT	1 cut(s)	354
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TscAI	CASTG	2 cut(s)	210, 307
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	2 cut(s)	210, 307
VpaK11BI	GGWCC	2 cut(s)	121, 319
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.