Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007548.1

Orthogroup ID

OG0031391

Physical Location & Seq

Genomic Coordinates Forward (+)

16630 .. 29202

Gene Structure 12573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007548.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgagtgtggtgggatttgattttggcaatgagactggcattgtggccgtggtaaggcacaacggtatcgatgttgtgctcaatgatgagtccaaacacgaaactcctgccattgtttgtttcggggataagcagcggttcattgggaccgccggcgctgcttcatctatgatgaaccctaagaacacgatttcgcagatcaaacgcttggttggaaagaaattctcggatcctgtgttgcagagggatatcaagtccctgccttttgctgttactgaagggcctgatggatatccattgatccatgcccgttatttgggagaagccaagacattcacgcccacccaagttttgggaatggtgttctctgatctgaaaatcatagcccagaagaatcttaatgcagcagttgtagactgctgtataggaattccggtttatttcactgatctccaaagaagagctgttgaggatgcagccagaattgctgggttgaaccctcttagaagaggcagcctccgcccatcactgcttaggtggccgtccacggccttcccccatcaagattgtaggaaagagacctccttggattgggctcacctgcaatcaaaggaagaggagatcccaacaaagcctccggtgaagacccgacaagcactcgcgcctccacagaaaaaccaggttgccgctgccttatgcaccgtcgtcctgcaactcgatgcccttcgattacaacaacctacgtcgcaaaccagacctcacgtcacccttgccttcaaacctagcaccatatcaaaatccgcgccgctgtccacataccagacgagaacgacgctaaaccccaacaagcccccgtcgccctctgcgtttcagatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04530 ko04612 map04530 map04612

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

292

Amino Acids

32.0

Weight (kDa)

9.57

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031391)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8259695.1_g000001 Rmu_sc0007548.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	609
Acc36I	ACCTGC	1 cut(s)	609
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	2 cut(s)	662, 803
AciI	CCGC	6 cut(s)	136, 150, 520, 687, 801, 806
AclWI	GGATC	4 cut(s)	224, 237, 295, 616
AcoI	YGGCCR	2 cut(s)	45, 539
AcsI	RAATTY	2 cut(s)	221, 429
AcuI	CTGAAG	1 cut(s)	297
AfiI	CCNNNNNNNGG	4 cut(s)	54, 316, 352, 591
AgsI	TTSAA	2 cut(s)	496, 778
AhdI	GACNNNNNGTC	1 cut(s)	761
AjiI	CACGTC	1 cut(s)	763
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	1 cut(s)	464
AluI	AGCT	1 cut(s)	464
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	26, 572
AlwI	GGATC	4 cut(s)	224, 237, 295, 616
AoxI	GGCC	4 cut(s)	45, 281, 539, 549
ApeKI	GCWGC	6 cut(s)	133, 158, 404, 476, 513, 689
ApoI	RAATTY	2 cut(s)	221, 429
AspLEI	GCGC	3 cut(s)	158, 664, 805
AspS9I	GGNCC	2 cut(s)	147, 281
AsuHPI	GGTGA	3 cut(s)	590, 652, 757
AvaII	GGWCC	1 cut(s)	147
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BamHI	GGATCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	650
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	6 cut(s)	145, 145, 416, 488, 525, 676
BccI	CCATC	3 cut(s)	281, 532, 567
BceAI	ACGGC	3 cut(s)	32, 526, 564
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BciT130I	CCWGG	1 cut(s)	680
BcoDI	GTCTC	2 cut(s)	26, 572
BfaI	CTAG	1 cut(s)	783
BfoI	RGCGCY	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	609
BisI	GCNGC	8 cut(s)	134, 159, 405, 477, 514, 687, 690, 806
BlsI	GCNGC	8 cut(s)	135, 160, 406, 478, 515, 688, 691, 807
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	147
BmeRI	GACNNNNNGTC	1 cut(s)	761
BmgBI	CACGTC	1 cut(s)	763
BmgT120I	GGNCC	2 cut(s)	147, 281
BmiI	GGNNCC	2 cut(s)	148, 231
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	2 cut(s)	463, 709
BpiI	GAAGAC	1 cut(s)	650
BplI	GAGNNNNNCTC	2 cut(s)	501, 533
Bpu10I	CCTNAGC	1 cut(s)	533
Bsa29I	ATCGAT	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	3 cut(s)	48, 546, 585
BsaWI	WCCGGW	2 cut(s)	433, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 316, 352, 591
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	680
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	48, 546, 585
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	4 cut(s)	54, 316, 352, 591
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	6 cut(s)	145, 145, 416, 488, 525, 676
BseYI	CCCAGC	1 cut(s)	488
Bsh1236I	CGCG	2 cut(s)	662, 803
BshFI	GGCC	4 cut(s)	47, 283, 541, 551
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	3 cut(s)	153, 434, 638
BslFI	GGGAC	2 cut(s)	160, 241
BslI	CCNNNNNNNGG	4 cut(s)	54, 316, 352, 591
BsmAI	GTCTC	2 cut(s)	26, 572
BsmFI	GGGAC	2 cut(s)	160, 241
BsnI	GGCC	4 cut(s)	47, 283, 541, 551
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	2 cut(s)	81, 598
Bsp143I	GATC	6 cut(s)	198, 229, 300, 370, 448, 621
BspACI	CCGC	6 cut(s)	136, 150, 520, 687, 801, 806
BspANI	GGCC	4 cut(s)	47, 283, 541, 551
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	2 cut(s)	662, 803
BspLI	GGNNCC	2 cut(s)	148, 231
BspMI	ACCTGC	1 cut(s)	609
BspPI	GGATC	4 cut(s)	224, 237, 295, 616
BspQI	GCTCTTC	1 cut(s)	454
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	48, 546, 585
BssMI	GATC	6 cut(s)	198, 229, 300, 370, 448, 621
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	65, 703
Bst6I	CTCTTC	3 cut(s)	454, 502, 609
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	180, 503, 533
BstDSI	CCRYGG	2 cut(s)	48, 546
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	2 cut(s)	662, 803
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	158, 664, 805
BstKTI	GATC	6 cut(s)	201, 232, 303, 373, 451, 624
BstMAI	GTCTC	2 cut(s)	26, 572
BstMBI	GATC	6 cut(s)	198, 229, 300, 370, 448, 621
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 485, 519, 538, 856
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	678
BstUI	CGCG	2 cut(s)	662, 803
BstV1I	GCAGC	6 cut(s)	145, 145, 416, 488, 525, 676
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	2 cut(s)	229, 621
BstYI	RGATCY	2 cut(s)	229, 621
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	4 cut(s)	47, 283, 541, 551
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	2 cut(s)	48, 546
BtrI	CACGTC	1 cut(s)	763
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	444, 527
BveI	ACCTGC	1 cut(s)	609
Cac8I	GCNNGC	1 cut(s)	154
CfoI	GCGC	3 cut(s)	158, 664, 805
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	147, 281
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	1 cut(s)	841
CsiI	ACCWGGT	1 cut(s)	678
CviAII	CATG	1 cut(s)	305
DdeI	CTNAG	3 cut(s)	180, 503, 533
DpnI	GATC	6 cut(s)	200, 231, 302, 372, 450, 623
DpnII	GATC	6 cut(s)	198, 229, 300, 370, 448, 621
DriI	GACNNNNNGTC	1 cut(s)	761
EaeI	YGGCCR	2 cut(s)	45, 539
Eam1104I	CTCTTC	3 cut(s)	454, 502, 609
Eam1105I	GACNNNNNGTC	1 cut(s)	761
EarI	CTCTTC	3 cut(s)	454, 502, 609
EciI	GGCGGA	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	598
Eco31I	GGTCTC	1 cut(s)	572
Eco32I	GATATC	2 cut(s)	250, 293
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	678
EcoRV	GATATC	2 cut(s)	250, 293
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	1 cut(s)	308
FaiI	YATR	7 cut(s)	170, 306, 383, 425, 697, 791, 817
FaqI	GGGAC	2 cut(s)	160, 241
FatI	CATG	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	8 cut(s)	134, 159, 405, 477, 514, 687, 690, 806
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	8 cut(s)	134, 159, 405, 477, 514, 687, 690, 806
FspBI	CTAG	1 cut(s)	783
GlaI	GCGC	3 cut(s)	157, 663, 804
GluI	GCNGC	8 cut(s)	134, 159, 405, 477, 514, 687, 690, 806
GsaI	CCCAGC	1 cut(s)	492
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	4 cut(s)	47, 283, 541, 551
HapII	CCGG	3 cut(s)	153, 434, 638
HgaI	GACGC	1 cut(s)	841
HhaI	GCGC	3 cut(s)	158, 664, 805
Hin1II	CATG	1 cut(s)	308
Hin6I	GCGC	3 cut(s)	156, 662, 803
HinP1I	GCGC	3 cut(s)	156, 662, 803
HinfI	GANTC	2 cut(s)	89, 394
HpaII	CCGG	3 cut(s)	153, 434, 638
HphI	GGTGA	3 cut(s)	590, 652, 757
Hpy166II	GTNNAC	3 cut(s)	415, 546, 813
Hpy188I	TCNGA	4 cut(s)	229, 370, 375, 873
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	3 cut(s)	415, 546, 813
Hpy99I	CGWCG	4 cut(s)	707, 748, 835, 859
HpyAV	CCTTC	4 cut(s)	272, 562, 734, 784
HpyCH4III	ACNGT	2 cut(s)	65, 703
HpyCH4IV	ACGT	2 cut(s)	743, 762
HpyCH4V	TGCA	6 cut(s)	241, 404, 476, 604, 699, 712
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 485, 519, 538, 856
HpyF3I	CTNAG	3 cut(s)	180, 503, 533
HpySE526I	ACGT	2 cut(s)	743, 762
Hsp92II	CATG	1 cut(s)	308
HspAI	GCGC	3 cut(s)	156, 662, 803
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	6 cut(s)	198, 229, 300, 370, 448, 621
LguI	GCTCTTC	1 cut(s)	454
Lsp1109I	GCAGC	6 cut(s)	145, 145, 416, 488, 525, 676
LweI	GCATC	2 cut(s)	463, 709
MabI	ACCWGGT	1 cut(s)	678
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	2 cut(s)	743, 762
MaeIII	GTNAC	2 cut(s)	271, 763
MalI	GATC	6 cut(s)	200, 231, 302, 372, 450, 623
MboI	GATC	6 cut(s)	198, 229, 300, 370, 448, 621
MboII	GAAGA	5 cut(s)	403, 471, 519, 626, 655
MflI	RGATCY	2 cut(s)	229, 621
MhlI	GDGCHC	2 cut(s)	81, 598
MluCI	AATT	3 cut(s)	221, 429, 483
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	193
MreI	CGCCGGCG	1 cut(s)	152
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	3 cut(s)	136, 689, 808
MspI	CCGG	3 cut(s)	153, 434, 638
MspR9I	CCNGG	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	680
MvnI	CGCG	2 cut(s)	662, 803
MwoI	GCNNNNNNNGC	5 cut(s)	158, 485, 519, 538, 856
NaeI	GCCGGC	1 cut(s)	154
NdeII	GATC	6 cut(s)	198, 229, 300, 370, 448, 621
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	2 cut(s)	148, 231
NmuCI	GTSAC	1 cut(s)	763
PaqCI	CACCTGC	1 cut(s)	609
PciSI	GCTCTTC	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	863
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	394
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	8 cut(s)	135, 160, 406, 478, 515, 688, 691, 807
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	678
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	148, 231
PspPI	GGNCC	2 cut(s)	147, 281
PsuI	RGATCY	2 cut(s)	229, 621
SapI	GCTCTTC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	8 cut(s)	134, 159, 405, 477, 514, 687, 690, 806
Sau3AI	GATC	6 cut(s)	198, 229, 300, 370, 448, 621
Sau96I	GGNCC	2 cut(s)	147, 281
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	2 cut(s)	81, 598
SexAI	ACCWGGT	1 cut(s)	678
SfaNI	GCATC	2 cut(s)	463, 709
SgrAI	CRCCGGYG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	147
Sse9I	AATT	3 cut(s)	221, 429, 483
SsiI	CCGC	6 cut(s)	136, 150, 520, 687, 801, 806
SspMI	CTAG	1 cut(s)	783
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	65, 703
TaiI	ACGT	2 cut(s)	746, 765
TaqI	TCGA	3 cut(s)	69, 717, 727
TasI	AATT	3 cut(s)	221, 429, 483
TauI	GCSGC	2 cut(s)	689, 808
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	451, 534
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	6 cut(s)	133, 158, 404, 476, 513, 689
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	3 cut(s)	130, 153, 188
TspRI	CASTG	2 cut(s)	451, 534
Van91I	CCANNNNNTGG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	2 cut(s)	221, 429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.