Rmu_sc0008321.1_g000002

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008321.1
OG0031405
Physical Location & Seq
Reverse (-)
5747 .. 6211
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008321.1_g000002.1.cds

Sequence Viewer

Length: 465 bp
atgtgccagagttcgatcgggttgatacttatcagccaatatctctatctagaaacctacgatgagaaagcagttgttgcccgagcaggaaaaccgattgattcgatgttcttcattatagatggtgtgattgattggactgacgagactaacatggctaccgatgctgaaaccacgggttcttcttcctcatctaatagcagcaagcttaagaacggtgattattttggacaagaacttttgagttggggagcatttaactacgggagctcttattttagccctgttcctacttcgactcgacatgccaaatgtcgaacaaaagtagaagtcctgcagctgagtagggggacgttagtaaatacagaagtccacgattacatgtctcagagtgactctctggcgcacttggaggagttggcagttcctcataaccacattgatcagataatagacgaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
6PF2K Ank_2 Ank_4 Ank_5 F-box-like His_Phos_1 LRR_6 PAS_9 Pkinase Pkinase_Tyr RGS cNMP_binding

Protein Analysis

154

Amino Acids

17.08

Weight (kDa)

4.64

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031405)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0008321.1_g000002 Rmu_sc0023745.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 381
AluBI AGCT 3 cut(s) 208, 270, 340
AluI AGCT 3 cut(s) 208, 270, 340
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 2 cut(s) 140, 390
Ama87I CYCGRG 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 201, 337
AspLEI GCGC 1 cut(s) 406
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 81
BanII GRGCYC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 213, 349
BccI CCATC 1 cut(s) 116
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 140, 390
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 335
BfrI CTTAAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 202, 338
BlsI GCNGC 2 cut(s) 203, 339
BmeT110I CYCGRG 1 cut(s) 81
BmsI GCATC 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 382, 414
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 29
BseMII CTCAG 2 cut(s) 332, 401
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 2 cut(s) 213, 349
Bsh1285I CGRYCG 1 cut(s) 18
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 140, 390
BsmFI GGGAC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 15, 442
BspCNI CTCAG 2 cut(s) 333, 400
BspMAI CTGCAG 1 cut(s) 339
BspTI CTTAAG 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 2 cut(s) 15, 442
Bst4CI ACNGT 1 cut(s) 218
BstAFI CTTAAG 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 341, 387
BstDSI CCRYGG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 2 cut(s) 18, 445
BstMAI GTCTC 2 cut(s) 140, 390
BstMBI GATC 2 cut(s) 15, 442
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 2 cut(s) 77, 164
BstNSI RCATGY 2 cut(s) 308, 385
BstSFI CTRYAG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 213, 349
BtgI CCRYGG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 1 cut(s) 406
CviAII CATG 3 cut(s) 154, 305, 382
CviJI RGCY 6 cut(s) 36, 158, 208, 270, 282, 340
CviKI_1 RGCY 6 cut(s) 36, 158, 208, 270, 282, 340
DdeI CTNAG 2 cut(s) 341, 387
DpnI GATC 2 cut(s) 17, 444
DpnII GATC 2 cut(s) 15, 442
Ecl136II GAGCTC 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 272
FaeI CATG 3 cut(s) 157, 308, 385
FaiI YATR 5 cut(s) 119, 155, 306, 383, 432
FaqI GGGAC 1 cut(s) 364
FatI CATG 3 cut(s) 153, 304, 381
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 202, 338
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 2 cut(s) 202, 338
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 405
GluI GCNGC 2 cut(s) 202, 338
HhaI GCGC 1 cut(s) 406
Hin1II CATG 3 cut(s) 157, 308, 385
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 3 cut(s) 101, 298, 395
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 390, 447
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 373
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 1 cut(s) 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 164
HpyF3I CTNAG 2 cut(s) 341, 387
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 3 cut(s) 157, 308, 385
HspAI GCGC 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 2 cut(s) 15, 442
LmnI GCTCC 2 cut(s) 251, 267
LpnPI CCDG 5 cut(s) 20, 72, 297, 347, 386
Lsp1109I GCAGC 2 cut(s) 213, 349
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 392
MalI GATC 2 cut(s) 17, 444
MboI GATC 2 cut(s) 15, 442
MboII GAAGA 3 cut(s) 103, 174, 177
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 2 cut(s) 292, 389
MnlI CCTC 4 cut(s) 199, 406, 438, 451
MseI TTAA 2 cut(s) 210, 258
MspA1I CMGCKG 1 cut(s) 340
MspCI CTTAAG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 77, 164
NdeII GATC 2 cut(s) 15, 442
NlaIII CATG 3 cut(s) 157, 308, 385
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 2 cut(s) 308, 385
PciI ACATGT 1 cut(s) 381
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 2 cut(s) 203, 339
Ple19I CGATCG 1 cut(s) 18
PleI GAGTC 2 cut(s) 292, 389
PpsI GAGTC 2 cut(s) 292, 389
PscI ACATGT 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 339
PvuI CGATCG 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 340
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 2 cut(s) 210, 258
SatI GCNGC 2 cut(s) 202, 338
Sau3AI GATC 2 cut(s) 15, 442
SchI GAGTC 2 cut(s) 292, 389
SduI GDGCHC 1 cut(s) 272
SetI ASST 6 cut(s) 59, 210, 272, 342, 356, 462
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 272
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 356
TaqI TCGA 5 cut(s) 14, 104, 296, 301, 316
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 210, 258
Tru9I TTAA 2 cut(s) 210, 258
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 2 cut(s) 201, 337
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 103
Vha464I CTTAAG 1 cut(s) 209
XbaI TCTAGA 1 cut(s) 49
XceI RCATGY 2 cut(s) 308, 385
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.