Rmu_sc0023745.1_g000004

voltage-gated potassium channel activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023745.1
OG0031405
Physical Location & Seq
Reverse (-)
22717 .. 23163
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023745.1_g000004.1.cds

Sequence Viewer

Length: 447 bp
atgcttcaaaatgtgccagagttcggtttgatacttatcagccaatatctctatctagaaacctacgatgagaatgcagttgttgcccgagcaggaaaaccgattgattcgatgttcttcattatagatggtgtgattgattggactgacgagactaacatggctaccgatgctgaaaccacgggttcttcttcctcatctaatagcagcaagcttaagaacggtgattattttggacaagaacttttgagttggggagcatttaactacgggagctcttattttagccctgttcctacttcgactcgagatgccaaatgtcgaacaaaagtagaagtcctgcagctgagttgggggacgttagtaaatacagaagtccacgattacatgtctcagagtgattctctggcgcacttggaggagttggcagttcctcctaagtcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
6PF2K Ank_2 Ank_4 Ank_5 F-box-like His_Phos_1 LRR_6 PAS_9 Pkinase Pkinase_Tyr RGS cNMP_binding

Protein Analysis

148

Amino Acids

16.38

Weight (kDa)

4.35

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031405)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0008321.1_g000002 Rmu_sc0023745.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 23
AflII CTTAAG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 1 cut(s) 8
AluBI AGCT 3 cut(s) 214, 276, 346
AluI AGCT 3 cut(s) 214, 276, 346
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 2 cut(s) 146, 396
Ama87I CYCGRG 2 cut(s) 87, 306
ApeKI GCWGC 2 cut(s) 207, 343
AspLEI GCGC 1 cut(s) 412
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 2 cut(s) 87, 306
BanII GRGCYC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 219, 355
BccI CCATC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcoDI GTCTC 2 cut(s) 146, 396
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 341
BfrI CTTAAG 1 cut(s) 215
BisI GCNGC 2 cut(s) 208, 344
BlsI GCNGC 2 cut(s) 209, 345
BmeT110I CYCGRG 2 cut(s) 87, 306
BmsI GCATC 2 cut(s) 160, 301
BplI GAGNNNNNCTC 2 cut(s) 388, 420
BsaBI GATNNNNATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 180
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 2 cut(s) 338, 407
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 2 cut(s) 219, 355
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 2 cut(s) 87, 306
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 146, 396
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 79
BsoBI CYCGRG 2 cut(s) 87, 306
Bsp1286I GDGCHC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 339, 406
BspMAI CTGCAG 1 cut(s) 345
BspTI CTTAAG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 224
BstAFI CTTAAG 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 3 cut(s) 347, 393, 438
BstDSI CCRYGG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 412
BstMAI GTCTC 2 cut(s) 146, 396
BstMWI GCNNNNNNNGC 2 cut(s) 83, 170
BstNSI RCATGY 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 219, 355
BtgI CCRYGG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 412
CviAII CATG 2 cut(s) 160, 388
CviJI RGCY 6 cut(s) 42, 164, 214, 276, 288, 346
CviKI_1 RGCY 6 cut(s) 42, 164, 214, 276, 288, 346
DdeI CTNAG 3 cut(s) 347, 393, 438
Ecl136II GAGCTC 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 278
Eco53kI GAGCTC 1 cut(s) 276
Eco88I CYCGRG 2 cut(s) 87, 306
EcoICRI GAGCTC 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 278
FaeI CATG 2 cut(s) 163, 391
FaiI YATR 4 cut(s) 125, 161, 389, 445
FaqI GGGAC 1 cut(s) 370
FatI CATG 2 cut(s) 159, 387
Fnu4HI GCNGC 2 cut(s) 208, 344
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 208, 344
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 411
GluI GCNGC 2 cut(s) 208, 344
HhaI GCGC 1 cut(s) 412
Hin1II CATG 2 cut(s) 163, 391
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 3 cut(s) 107, 304, 401
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 2 cut(s) 56, 308
Hpy8I GTNNAC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 2 cut(s) 77, 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 170
HpyF3I CTNAG 3 cut(s) 347, 393, 438
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 2 cut(s) 163, 391
HspAI GCGC 1 cut(s) 410
LmnI GCTCC 2 cut(s) 257, 273
LpnPI CCDG 5 cut(s) 30, 78, 303, 353, 392
Lsp1109I GCAGC 2 cut(s) 219, 355
LweI GCATC 2 cut(s) 160, 301
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 359
MboII GAAGA 3 cut(s) 109, 180, 183
MhlI GDGCHC 1 cut(s) 278
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 3 cut(s) 205, 412, 444
MseI TTAA 2 cut(s) 216, 264
MspA1I CMGCKG 1 cut(s) 346
MspCI CTTAAG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 83, 170
NlaIII CATG 2 cut(s) 163, 391
NspI RCATGY 1 cut(s) 391
PaeR7I CTCGAG 1 cut(s) 306
PciI ACATGT 1 cut(s) 387
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 2 cut(s) 107, 401
PkrI GCNGC 2 cut(s) 209, 345
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PscI ACATGT 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 278
PstI CTGCAG 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 346
SacI GAGCTC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 216, 264
SatI GCNGC 2 cut(s) 208, 344
SchI GAGTC 1 cut(s) 298
SduI GDGCHC 1 cut(s) 278
SetI ASST 5 cut(s) 65, 216, 278, 348, 362
SfaNI GCATC 2 cut(s) 160, 301
SfcI CTRYAG 1 cut(s) 341
Sfr274I CTCGAG 1 cut(s) 306
SlaI CTCGAG 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 215, 306
SmoI CTYRAG 2 cut(s) 215, 306
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 1 cut(s) 278
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 362
TaqI TCGA 4 cut(s) 110, 302, 307, 322
TfiI GAWTC 2 cut(s) 107, 401
Tru1I TTAA 2 cut(s) 216, 264
Tru9I TTAA 2 cut(s) 216, 264
TseI GCWGC 2 cut(s) 207, 343
TspDTI ATGAA 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 1 cut(s) 391
XhoI CTCGAG 1 cut(s) 306
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.