Rmu_sc0008593.1_g000003

TBCC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008593.1
OG0025567
Physical Location & Seq
Forward (+)
8890 .. 9643
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008593.1_g000003.1.cds

Sequence Viewer

Length: 531 bp
atgagagagccaattgagtcctcgaccttgtcgtgttcaaccaaagacccagtcttttttattctcctacagcgcgagccattcgagcatgggctgctctccatccccaagctcatctttgctgaccccacgcaaaccctaattcctcttaagcagaagctaatcgagcaatcgtcgagtcgccaggtcgacaccacaacgatctccgagtcgttgcaggtctcaattgatctcgcgcctagcctcggttcatcatttgaccgagtcgacccggaagcagactcacccgccgctcaacaccacctgcgtgcctccgcatctctgttactccaacagcgacggttacagctcttatggagcaatccgggtagtggcggaggacgaggaggagctcatggtgatcgaaagtgggtcgggtattgcgatgtggatgttgttggttttggtgttgagcttgaagaggaggccattcattcactggttgtccccaaggaacagagcactgcgactgtaggtgaagaaggagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCC

Protein Analysis

176

Amino Acids

19.15

Weight (kDa)

4.92

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025567)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003633.1_g000006 Rmu_sc0008593.1_g000003 Rmu_sc0011666.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 312
Acc36I ACCTGC 2 cut(s) 208, 312
AccBSI CCGCTC 1 cut(s) 293
AccI GTMKAC 2 cut(s) 189, 267
AccII CGCG 2 cut(s) 75, 236
AciI CCGC 4 cut(s) 288, 291, 315, 375
AfiI CCNNNNNNNGG 2 cut(s) 245, 371
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 39, 458
AjnI CCWGG 1 cut(s) 183
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 5 cut(s) 112, 160, 349, 392, 454
AluI AGCT 5 cut(s) 112, 160, 349, 392, 454
Alw21I GWGCWC 2 cut(s) 394, 503
Alw26I GTCTC 1 cut(s) 226
AoxI GGCC 1 cut(s) 465
ApeKI GCWGC 1 cut(s) 94
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AspLEI GCGC 2 cut(s) 75, 238
AsuC2I CCSGG 2 cut(s) 272, 366
AsuHPI GGTGA 3 cut(s) 276, 410, 527
BanII GRGCYC 1 cut(s) 394
Bbv12I GWGCWC 2 cut(s) 394, 503
BbvI GCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 2 cut(s) 272, 366
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 2 cut(s) 68, 510
BfrI CTTAAG 1 cut(s) 149
BfuAI ACCTGC 2 cut(s) 208, 312
BisI GCNGC 2 cut(s) 95, 291
BlsI GCNGC 2 cut(s) 96, 292
Bme1390I CCNGG 3 cut(s) 185, 272, 366
BmrFI CCNGG 3 cut(s) 185, 272, 366
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 326
BmuI ACTGGG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 272, 366
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 244, 489
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 371
Bse1I ACTGG 2 cut(s) 50, 483
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 244, 489
BseGI GGATG 2 cut(s) 102, 436
BseLI CCNNNNNNNGG 2 cut(s) 245, 371
BseNI ACTGG 2 cut(s) 50, 483
BseRI GAGGAG 3 cut(s) 399, 402, 476
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 2 cut(s) 75, 236
BshFI GGCC 1 cut(s) 467
BsiHKAI GWGCWC 2 cut(s) 394, 503
BsiSI CCGG 2 cut(s) 272, 365
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 2 cut(s) 245, 371
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 1 cut(s) 467
Bso31I GGTCTC 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 394, 503
Bsp143I GATC 3 cut(s) 201, 229, 400
BspACI CCGC 4 cut(s) 288, 291, 315, 375
BspANI GGCC 1 cut(s) 467
BspFNI CGCG 2 cut(s) 75, 236
BspMI ACCTGC 2 cut(s) 208, 312
BspTI CTTAAG 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 293
BsrI ACTGG 2 cut(s) 50, 483
BssECI CCNNGG 2 cut(s) 244, 489
BssMI GATC 3 cut(s) 201, 229, 400
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 2 cut(s) 342, 511
Bst6I CTCTTC 1 cut(s) 453
BstAFI CTTAAG 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 77, 309
BstF5I GGATG 2 cut(s) 102, 436
BstFNI CGCG 2 cut(s) 75, 236
BstHHI GCGC 2 cut(s) 75, 238
BstKTI GATC 3 cut(s) 204, 232, 403
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 201, 229, 400
BstMWI GCNNNNNNNGC 3 cut(s) 85, 94, 166
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 3 cut(s) 183, 270, 364
BstSFI CTRYAG 2 cut(s) 68, 510
BstUI CGCG 2 cut(s) 75, 236
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 102, 436
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 476, 501
BveI ACCTGC 2 cut(s) 208, 312
Cac8I GCNNGC 2 cut(s) 77, 309
CfoI GCGC 2 cut(s) 75, 238
CviAII CATG 2 cut(s) 89, 395
DpnI GATC 3 cut(s) 203, 231, 402
DpnII GATC 3 cut(s) 201, 229, 400
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EciI GGCGGA 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 2 cut(s) 92, 398
FaiI YATR 3 cut(s) 90, 355, 396
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 1 cut(s) 470
FatI CATG 2 cut(s) 88, 394
FauI CCCGC 1 cut(s) 295
FblI GTMKAC 2 cut(s) 189, 267
Fnu4HI GCNGC 2 cut(s) 95, 291
FokI GGATG 2 cut(s) 89, 443
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 2 cut(s) 95, 291
FspBI CTAG 1 cut(s) 240
GlaI GCGC 2 cut(s) 74, 237
GluI GCNGC 2 cut(s) 95, 291
HaeIII GGCC 1 cut(s) 467
HapII CCGG 2 cut(s) 272, 365
HhaI GCGC 2 cut(s) 75, 238
Hin1II CATG 2 cut(s) 92, 398
Hin6I GCGC 2 cut(s) 73, 236
HinP1I GCGC 2 cut(s) 73, 236
HincII GTYRAC 2 cut(s) 190, 268
HindII GTYRAC 2 cut(s) 190, 268
HinfI GANTC 5 cut(s) 17, 178, 209, 264, 281
HpaII CCGG 2 cut(s) 272, 365
HphI GGTGA 3 cut(s) 276, 410, 527
Hpy166II GTNNAC 2 cut(s) 190, 268
Hpy188I TCNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 190, 268
Hpy99I CGWCG 2 cut(s) 178, 342
HpyAV CCTTC 1 cut(s) 515
HpyCH4III ACNGT 2 cut(s) 342, 511
HpyCH4V TGCA 1 cut(s) 217
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 94, 166
Hsp92II CATG 2 cut(s) 92, 398
HspAI GCGC 2 cut(s) 73, 236
Kzo9I GATC 3 cut(s) 201, 229, 400
LmnI GCTCC 2 cut(s) 357, 389
LpnPI CCDG 8 cut(s) 63, 170, 197, 203, 285, 317, 378, 464
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 326
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 324, 342
MalI GATC 3 cut(s) 203, 231, 402
MbiI CCGCTC 1 cut(s) 293
MboI GATC 3 cut(s) 201, 229, 400
MboII GAAGA 2 cut(s) 470, 530
MfeI CAATTG 2 cut(s) 12, 225
MhlI GDGCHC 2 cut(s) 394, 503
MluCI AATT 3 cut(s) 12, 141, 225
MlyI GAGTC 5 cut(s) 26, 187, 218, 273, 275
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 9 cut(s) 31, 156, 254, 322, 371, 377, 380, 454, 457
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 306
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 2 cut(s) 272, 365
MspR9I CCNGG 3 cut(s) 185, 272, 366
MunI CAATTG 2 cut(s) 12, 225
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 2 cut(s) 75, 236
MwoI GCNNNNNNNGC 3 cut(s) 85, 94, 166
NciI CCSGG 2 cut(s) 272, 366
NdeII GATC 3 cut(s) 201, 229, 400
NlaIII CATG 2 cut(s) 92, 398
OliI CACNNNNGTG 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 420
PflFI GACNNNGTC 3 cut(s) 28, 50, 263
PkrI GCNGC 2 cut(s) 96, 292
PleI GAGTC 5 cut(s) 25, 186, 217, 272, 275
PpsI GAGTC 5 cut(s) 25, 186, 217, 272, 275
Psp124BI GAGCTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PsyI GACNNNGTC 3 cut(s) 28, 50, 263
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 394
SalI GTCGAC 2 cut(s) 188, 266
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 95, 291
Sau3AI GATC 3 cut(s) 201, 229, 400
SchI GAGTC 5 cut(s) 26, 187, 218, 273, 275
ScrFI CCNGG 3 cut(s) 185, 272, 366
SduI GDGCHC 2 cut(s) 394, 503
SfaNI GCATC 1 cut(s) 326
SfcI CTRYAG 2 cut(s) 68, 510
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 3 cut(s) 12, 141, 225
SsiI CCGC 4 cut(s) 288, 291, 315, 375
SspMI CTAG 1 cut(s) 240
SstI GAGCTC 1 cut(s) 394
StyD4I CCNGG 3 cut(s) 183, 270, 364
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 2 cut(s) 342, 511
TaqI TCGA 7 cut(s) 23, 84, 165, 176, 189, 267, 403
TaqII GACCGA 1 cut(s) 276
TasI AATT 3 cut(s) 12, 141, 225
TauI GCSGC 1 cut(s) 293
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 2 cut(s) 483, 508
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 240, 461
TspRI CASTG 2 cut(s) 483, 508
Tth111I GACNNNGTC 3 cut(s) 28, 50, 263
Vha464I CTTAAG 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmiI GTMKAC 2 cut(s) 189, 267
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.