Rmu_sc0011666.1_g000006

TBCC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011666.1
OG0025567
Physical Location & Seq
Reverse (-)
26216 .. 28360
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011666.1_g000006.1.cds

Sequence Viewer

Length: 939 bp
atgagagagccaattgagtcctcgaccttgtcgtgttcaaccaaagacccagtcttttttattctcctacagtgcgagccattcgagcatgggatgctctccatccccaagctcatctttgctgaccccacgcaaaccctaattcctcttaagcagaagctaatcgagcaatcgtcgagtcgccaggtcaacaccacaacgatctccgagtcgttgcaggtctcaattgatctcgcgcctagcctcggttcatcatttgatcgagtcgacccggaagcagactcacccgccgctcaacaccacctgccgcccaacaccacctgcgtgcctccgcatctctgttactccaacagcggcggttacagctcttatggagcaatccgggtcgtggcggaggacgaggaggagctcatggtggtgtgtgtttttctcgaattttggcgacttagagatcgaaagtgggtcgggtattgcgatgtggatgttgttggttttggtgttgagcttgaagaggaggccattcattcactggttgtccccaaggaacagagcactgcgactacgttgatcccgtttgctactccgccgcccttggcaggaaaaagatcatcccagtcccaccaagacaacaccacctgccaccaccaatgtcaccgacctgaatgcaaagcccgtctagaccccaagcactacttcactcactcatcgtttgctgctggatcaccacctcgatctaggatgcagcaaagaaaagcgacagccgcctctccagctcaccggggaactgggttaaaacatagctcactcatccaccccaccaccaaaccaccaaaaccgcacgccgttgatttcagacgggccccgattgggcgaagacacatgattttctgtaccaagcctatcctggaaagcagtgtagcgtctgtgtgtccctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCC

Protein Analysis

312

Amino Acids

34.57

Weight (kDa)

7.25

Isoelectric Point (pI)

63.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025567)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003633.1_g000006 Rmu_sc0008593.1_g000003 Rmu_sc0011666.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 312, 329, 644
Acc36I ACCTGC 4 cut(s) 208, 312, 329, 644
AccBSI CCGCTC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 236
AclWI GGATC 2 cut(s) 562, 727
AcsI RAATTY 1 cut(s) 434
AfaI GTAC 1 cut(s) 892
AfiI CCNNNNNNNGG 4 cut(s) 245, 388, 596, 867
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 39, 509
AjnI CCWGG 2 cut(s) 183, 903
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 7 cut(s) 112, 160, 366, 409, 505, 773, 801
AluI AGCT 7 cut(s) 112, 160, 366, 409, 505, 773, 801
Alw21I GWGCWC 2 cut(s) 411, 554
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 2 cut(s) 562, 727
AoxI GGCC 2 cut(s) 516, 858
ApaI GGGCCC 1 cut(s) 862
ApeKI GCWGC 2 cut(s) 713, 742
ApoI RAATTY 1 cut(s) 434
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 858, 859
AsuC2I CCSGG 3 cut(s) 272, 383, 779
AsuHPI GGTGA 4 cut(s) 276, 644, 714, 767
BaeGI GKGCMC 1 cut(s) 862
BanII GRGCYC 2 cut(s) 411, 862
BbsI GAAGAC 1 cut(s) 880
Bbv12I GWGCWC 2 cut(s) 411, 554
BbvI GCAGC 2 cut(s) 700, 754
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 827
BcgI CGANNNNNNTGC 2 cut(s) 645, 679
BciT130I CCWGG 2 cut(s) 185, 905
BcnI CCSGG 3 cut(s) 272, 383, 779
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 3 cut(s) 240, 677, 735
BfmI CTRYAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 149
BfuAI ACCTGC 4 cut(s) 208, 312, 329, 644
BisI GCNGC 7 cut(s) 291, 308, 355, 587, 714, 743, 762
BlsI GCNGC 7 cut(s) 292, 309, 356, 588, 715, 744, 763
Bme1390I CCNGG 5 cut(s) 185, 272, 383, 779, 905
BmgT120I GGNCC 2 cut(s) 858, 859
BmiI GGNNCC 2 cut(s) 860, 861
BmrFI CCNGG 5 cut(s) 185, 272, 383, 779, 905
BmrI ACTGGG 3 cut(s) 44, 607, 795
BmsI GCATC 3 cut(s) 84, 343, 729
BmuI ACTGGG 3 cut(s) 44, 607, 795
BpiI GAAGAC 1 cut(s) 880
BpmI CTGGAG 1 cut(s) 753
BpuMI CCSGG 3 cut(s) 272, 383, 779
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 4 cut(s) 244, 540, 591, 778
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 388, 596, 867
Bse1I ACTGG 4 cut(s) 50, 534, 613, 790
BseBI CCWGG 2 cut(s) 185, 905
BseDI CCNNGG 4 cut(s) 244, 540, 591, 778
BseGI GGATG 6 cut(s) 99, 102, 487, 608, 744, 807
BseLI CCNNNNNNNGG 4 cut(s) 245, 388, 596, 867
BseNI ACTGG 4 cut(s) 50, 534, 613, 790
BseRI GAGGAG 3 cut(s) 416, 419, 527
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 2 cut(s) 700, 754
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 2 cut(s) 518, 860
BsiHKAI GWGCWC 2 cut(s) 411, 554
BsiSI CCGG 3 cut(s) 272, 382, 778
BslFI GGGAC 3 cut(s) 521, 601, 915
BslI CCNNNNNNNGG 4 cut(s) 245, 388, 596, 867
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 3 cut(s) 521, 601, 915
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 2 cut(s) 518, 860
Bso31I GGTCTC 1 cut(s) 226
Bsp120I GGGCCC 1 cut(s) 858
Bsp1286I GDGCHC 3 cut(s) 411, 554, 862
Bsp143I GATC 8 cut(s) 201, 229, 259, 451, 567, 605, 719, 731
BspANI GGCC 2 cut(s) 518, 860
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 860, 861
BspMI ACCTGC 4 cut(s) 208, 312, 329, 644
BspPI GGATC 2 cut(s) 562, 727
BspTI CTTAAG 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 226
BsrBI CCGCTC 1 cut(s) 293
BsrI ACTGG 4 cut(s) 50, 534, 613, 790
BssECI CCNNGG 4 cut(s) 244, 540, 591, 778
BssMI GATC 8 cut(s) 201, 229, 259, 451, 567, 605, 719, 731
BssT1I CCWWGG 2 cut(s) 540, 591
Bst2UI CCWGG 2 cut(s) 185, 905
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 504
BstAFI CTTAAG 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 77, 326, 840
BstDEI CTNAG 1 cut(s) 446
BstF5I GGATG 6 cut(s) 99, 102, 487, 608, 744, 807
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 8 cut(s) 204, 232, 262, 454, 570, 608, 722, 734
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 8 cut(s) 201, 229, 259, 451, 567, 605, 719, 731
BstMWI GCNNNNNNNGC 6 cut(s) 85, 94, 166, 363, 761, 770
BstNI CCWGG 2 cut(s) 185, 905
BstSCI CCNGG 5 cut(s) 183, 270, 381, 777, 903
BstSFI CTRYAG 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 862
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 700, 754
BstV2I GAAGAC 1 cut(s) 880
BsuRI GGCC 2 cut(s) 518, 860
BtgZI GCGATG 1 cut(s) 489
BtsCI GGATG 6 cut(s) 99, 102, 487, 608, 744, 807
BtsI GCAGTG 2 cut(s) 552, 919
BtsIMutI CAGTG 4 cut(s) 77, 527, 552, 919
BveI ACCTGC 4 cut(s) 208, 312, 329, 644
Cac8I GCNNGC 3 cut(s) 77, 326, 840
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 858, 859
CseI GACGC 1 cut(s) 909
Csp6I GTAC 1 cut(s) 891
CviAII CATG 3 cut(s) 89, 412, 880
CviQI GTAC 1 cut(s) 891
DdeI CTNAG 1 cut(s) 446
DpnI GATC 8 cut(s) 203, 231, 261, 453, 569, 607, 721, 733
DpnII GATC 8 cut(s) 201, 229, 259, 451, 567, 605, 719, 731
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
EciI GGCGGA 2 cut(s) 407, 573
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 540, 591
Eco24I GRGCYC 2 cut(s) 411, 862
Eco31I GGTCTC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 409
EcoICRI GAGCTC 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 859
EcoRII CCWGG 2 cut(s) 183, 903
EcoT14I CCWWGG 2 cut(s) 540, 591
EcoT38I GRGCYC 2 cut(s) 411, 862
ErhI CCWWGG 2 cut(s) 540, 591
FaeI CATG 3 cut(s) 92, 415, 883
FaiI YATR 5 cut(s) 90, 372, 413, 798, 881
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 677, 709
FaqI GGGAC 3 cut(s) 521, 601, 915
FatI CATG 3 cut(s) 88, 411, 879
FauI CCCGC 1 cut(s) 295
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 7 cut(s) 291, 308, 355, 587, 714, 743, 762
FokI GGATG 6 cut(s) 89, 106, 494, 595, 751, 794
FriOI GRGCYC 2 cut(s) 411, 862
Fsp4HI GCNGC 7 cut(s) 291, 308, 355, 587, 714, 743, 762
FspBI CTAG 3 cut(s) 240, 677, 735
GlaI GCGC 1 cut(s) 237
GluI GCNGC 7 cut(s) 291, 308, 355, 587, 714, 743, 762
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 2 cut(s) 518, 860
HapII CCGG 3 cut(s) 272, 382, 778
HgaI GACGC 1 cut(s) 909
HhaI GCGC 1 cut(s) 238
Hin1II CATG 3 cut(s) 92, 415, 883
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 2 cut(s) 190, 268
HindII GTYRAC 2 cut(s) 190, 268
HinfI GANTC 5 cut(s) 17, 178, 209, 264, 281
HpaII CCGG 3 cut(s) 272, 382, 778
HphI GGTGA 4 cut(s) 276, 644, 714, 767
Hpy166II GTNNAC 2 cut(s) 190, 268
Hpy188I TCNGA 2 cut(s) 208, 854
Hpy188III TCNNGA 2 cut(s) 431, 677
Hpy8I GTNNAC 2 cut(s) 190, 268
Hpy99I CGWCG 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 563
HpyCH4V TGCA 3 cut(s) 217, 666, 742
HpyF10VI GCNNNNNNNGC 6 cut(s) 85, 94, 166, 363, 761, 770
HpyF3I CTNAG 1 cut(s) 446
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 3 cut(s) 92, 415, 883
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 8 cut(s) 201, 229, 259, 451, 567, 605, 719, 731
LmnI GCTCC 2 cut(s) 374, 406
Lsp1109I GCAGC 2 cut(s) 700, 754
LweI GCATC 3 cut(s) 84, 343, 729
MaeI CTAG 3 cut(s) 240, 677, 735
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 3 cut(s) 341, 359, 650
MalI GATC 8 cut(s) 203, 231, 261, 453, 569, 607, 721, 733
MbiI CCGCTC 1 cut(s) 293
MboI GATC 8 cut(s) 201, 229, 259, 451, 567, 605, 719, 731
MboII GAAGA 2 cut(s) 521, 885
MfeI CAATTG 2 cut(s) 12, 225
MhlI GDGCHC 3 cut(s) 411, 554, 862
MluCI AATT 4 cut(s) 12, 141, 225, 434
MlyI GAGTC 5 cut(s) 26, 187, 218, 273, 275
MmeI TCCRAC 1 cut(s) 372
MseI TTAA 2 cut(s) 150, 791
MslI CAYNNNNRTG 2 cut(s) 323, 416
MspA1I CMGCKG 1 cut(s) 354
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 3 cut(s) 272, 382, 778
MspR9I CCNGG 5 cut(s) 185, 272, 383, 779, 905
MunI CAATTG 2 cut(s) 12, 225
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 2 cut(s) 185, 905
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 6 cut(s) 85, 94, 166, 363, 761, 770
NciI CCSGG 3 cut(s) 272, 383, 779
NdeII GATC 8 cut(s) 201, 229, 259, 451, 567, 605, 719, 731
NlaIII CATG 3 cut(s) 92, 415, 883
NlaIV GGNNCC 2 cut(s) 860, 861
NmuCI GTSAC 1 cut(s) 650
OliI CACNNNNGTG 1 cut(s) 323
PaqCI CACCTGC 3 cut(s) 312, 329, 644
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 471, 569
PctI GAATGC 1 cut(s) 668
PflFI GACNNNGTC 2 cut(s) 28, 50
PfoI TCCNGGA 1 cut(s) 903
PkrI GCNGC 7 cut(s) 292, 309, 356, 588, 715, 744, 763
PleI GAGTC 5 cut(s) 25, 186, 217, 272, 275
PpsI GAGTC 5 cut(s) 25, 186, 217, 272, 275
Psp124BI GAGCTC 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 183, 903
PspGI CCWGG 2 cut(s) 183, 903
PspN4I GGNNCC 2 cut(s) 860, 861
PspOMI GGGCCC 1 cut(s) 858
PspPI GGNCC 2 cut(s) 858, 859
PsyI GACNNNGTC 2 cut(s) 28, 50
RsaI GTAC 1 cut(s) 892
RsaNI GTAC 1 cut(s) 891
RseI CAYNNNNRTG 2 cut(s) 323, 416
SacI GAGCTC 1 cut(s) 411
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 150, 791
SatI GCNGC 7 cut(s) 291, 308, 355, 587, 714, 743, 762
Sau3AI GATC 8 cut(s) 201, 229, 259, 451, 567, 605, 719, 731
Sau96I GGNCC 2 cut(s) 858, 859
SchI GAGTC 5 cut(s) 26, 187, 218, 273, 275
ScrFI CCNGG 5 cut(s) 185, 272, 383, 779, 905
SduI GDGCHC 3 cut(s) 411, 554, 862
SfaNI GCATC 3 cut(s) 84, 343, 729
SfcI CTRYAG 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 323, 416
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 4 cut(s) 12, 141, 225, 434
SspMI CTAG 3 cut(s) 240, 677, 735
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 5 cut(s) 183, 270, 381, 777, 903
StyI CCWWGG 2 cut(s) 540, 591
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 566
TaqI TCGA 9 cut(s) 23, 84, 165, 176, 262, 267, 432, 454, 730
TasI AATT 4 cut(s) 12, 141, 225, 434
TauI GCSGC 5 cut(s) 293, 310, 357, 589, 764
Tru1I TTAA 2 cut(s) 150, 791
Tru9I TTAA 2 cut(s) 150, 791
TscAI CASTG 4 cut(s) 77, 534, 559, 919
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 2 cut(s) 713, 742
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 2 cut(s) 240, 512
TspRI CASTG 4 cut(s) 77, 534, 559, 919
Tth111I GACNNNGTC 2 cut(s) 28, 50
Vha464I CTTAAG 1 cut(s) 149
XapI RAATTY 1 cut(s) 434
XbaI TCTAGA 1 cut(s) 676
XcmI CCANNNNNNNNNTGG 2 cut(s) 526, 901
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 3 cut(s) 240, 677, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.