Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009128.1

Orthogroup ID

OG0029388

Physical Location & Seq

Genomic Coordinates Reverse (-)

14476 .. 15260

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009128.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggttgctgatttcgggctttcaagacatgacaagattaaatcacgttcatctgatatcaggggaacttttggatatgttgatcctgagtatgtggttacaagaatctttaccaagaaatgtgatgtttatagttttggtgtactgctctttgaactaattacaggcaggaatccacagcaaggtctcatggaatatgtggaatttgccacagtggacgcggcaggtaaacatgggtgggaagagattgtggacattcgtcttaatggagaatttgatatacaagaactagctcaggttgctgatcttgcttacagatgtgttagtgatgtctccagaaaacggccttctatgaggaacatagtgcagacattatcaggcattttgatgaagagacgtagagcaaagaaaccccagcaaaccccaactacagcagctgaagaaacttacattgaaatagatcttatagagaagcaggatgctttaattgaacgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

165

Amino Acids

18.86

Weight (kDa)

6.16

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029388)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g26220
rosa_multiflora	Rmu_sc0009128.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
AccII	CGCG	1 cut(s)	221
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	203, 272
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	182, 342
AgsI	TTSAA	4 cut(s)	24, 155, 455, 491
AluBI	AGCT	2 cut(s)	293, 437
AluI	AGCT	2 cut(s)	293, 437
Alw26I	GTCTC	3 cut(s)	191, 337, 388
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	2 cut(s)	203, 272
BbvI	GCAGC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	359
BcoDI	GTCTC	3 cut(s)	191, 337, 388
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	2 cut(s)	222, 435
BlsI	GCNGC	2 cut(s)	223, 436
BmsI	GCATC	1 cut(s)	469
BoxI	GACNNNNGTC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 342
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	2 cut(s)	182, 342
BseMII	CTCAG	2 cut(s)	78, 308
BseXI	GCAGC	1 cut(s)	446
BseYI	CCCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	346
BslI	CCNNNNNNNGG	2 cut(s)	182, 342
BsmAI	GTCTC	3 cut(s)	191, 337, 388
BsmBI	CGTCTC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	346
Bso31I	GGTCTC	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	82, 304, 460
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	2 cut(s)	79, 307
BspFNI	CGCG	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	191
BssMI	GATC	3 cut(s)	82, 304, 460
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	237, 386
BstDEI	CTNAG	2 cut(s)	87, 294
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	221
BstKTI	GATC	3 cut(s)	85, 307, 463
BstMAI	GTCTC	3 cut(s)	191, 337, 388
BstMBI	GATC	3 cut(s)	82, 304, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 308
BstPAI	GACNNNNGTC	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	215
CaiI	CAGNNNCTG	1 cut(s)	437
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	3 cut(s)	29, 190, 233
CviJI	RGCY	4 cut(s)	19, 293, 346, 437
CviKI_1	RGCY	4 cut(s)	19, 293, 346, 437
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	2 cut(s)	87, 294
DpnI	GATC	3 cut(s)	84, 306, 462
DpnII	GATC	3 cut(s)	82, 304, 460
Eam1104I	CTCTTC	2 cut(s)	237, 386
EarI	CTCTTC	2 cut(s)	237, 386
Eco31I	GGTCTC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	459
EcoRV	GATATC	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	3 cut(s)	32, 193, 236
FatI	CATG	3 cut(s)	28, 189, 232
Fnu4HI	GCNGC	2 cut(s)	222, 435
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	2 cut(s)	222, 435
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	2 cut(s)	222, 435
GsaI	CCCAGC	1 cut(s)	418
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	346
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	32, 193, 236
HinfI	GANTC	2 cut(s)	105, 172
Hpy166II	GTNNAC	4 cut(s)	143, 217, 230, 253
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	3 cut(s)	24, 86, 336
Hpy8I	GTNNAC	4 cut(s)	143, 217, 230, 253
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	2 cut(s)	46, 397
HpyCH4V	TGCA	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 308
HpyF3I	CTNAG	2 cut(s)	87, 294
HpySE526I	ACGT	2 cut(s)	46, 397
Hsp92II	CATG	3 cut(s)	32, 193, 236
Kzo9I	GATC	3 cut(s)	82, 304, 460
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	2 cut(s)	46, 397
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	3 cut(s)	84, 306, 462
MboI	GATC	3 cut(s)	82, 304, 460
MboII	GAAGA	3 cut(s)	254, 403, 452
MflI	RGATCY	1 cut(s)	460
MluCI	AATT	4 cut(s)	159, 203, 272, 486
MnlI	CCTC	1 cut(s)	348
MseI	TTAA	3 cut(s)	39, 264, 485
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	299, 308
NdeII	GATC	3 cut(s)	82, 304, 460
NlaIII	CATG	3 cut(s)	32, 193, 236
PfeI	GAWTC	2 cut(s)	105, 172
PkrI	GCNGC	2 cut(s)	223, 436
PshAI	GACNNNNGTC	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	3 cut(s)	39, 264, 485
SatI	GCNGC	2 cut(s)	222, 435
Sau3AI	GATC	3 cut(s)	82, 304, 460
SetI	ASST	7 cut(s)	49, 187, 229, 295, 300, 400, 439
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	386
Sse9I	AATT	4 cut(s)	159, 203, 272, 486
SsiI	CCGC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	2 cut(s)	49, 400
TasI	AATT	4 cut(s)	159, 203, 272, 486
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	105, 172
Tru1I	TTAA	3 cut(s)	39, 264, 485
Tru9I	TTAA	3 cut(s)	39, 264, 485
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	39, 404
TspRI	CASTG	1 cut(s)	219
XapI	RAATTY	2 cut(s)	203, 272
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.