Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009495.1

Orthogroup ID

OG0031428

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1390

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009495.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1003 bp

agttaaaacaccagttgaaaattccttgagggatgcaaagctctccttcaaagacctagatgaggtaatacttgttggtggttcaacacgtatacctgctgttcaggagcttgtaaggaagttgacggggaaggaaccaaatgttacagtcaaccctgatgaagttgttgcccttggtgctgcagttcaggctggtgtattagctggagatgtaagtgacattgtattgttggatgtgacaccactgtcactgggtttggagacccttgggggtgtcatgacaaagatcatcccaagaaacaccactctacccacctctaagtcagaggtattctcaactgctgcggatggtcagacaagtgtggagatcaatgttcttcaaggggagagagaatttgttagagataacaaatctcttggtagcttccgtctggatggcatcccccctgcaccacgtggggttcctcaaattgaagtgaagtttgacattgatgccaatggtatactctctgttgctgctgttgacaagggcacaggcaaacagcaggatattaccattactggtgctagcactctccctaatgatgaggtgcaaagaatggttagtgaagcagagaagtttgcaaaggaggacaaggagaagagagatgccattgatacaaagaatcaggcagattctgttgtctaccagactgagaagcagcttaaggagctgggagacaaggttccagccccagttaaagagaaggttgaggcaaaacttggagagctcaaggaggcgatttctgggggttcaacccaagttattaaggatgccatggctgctctcaaccaggaagttatgcagcttggacaatccctttacaaccagcctggtgcacctggtgcaggtgcagggccaacacctcccggtactgaagatgggcctgcagaatcatcatcctcatcgggcaagggacctgaaggagatgtgattgatgcagatttcactgacagcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

333

Amino Acids

34.92

Weight (kDa)

4.62

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031428)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0009495.1_g000001
rosa_samantha	Rh7CG353800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	879
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc36I	ACCTGC	2 cut(s)	104, 879
AccI	GTMKAC	3 cut(s)	92, 503, 685
AciI	CCGC	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	20, 393
AcuI	CTGAAG	2 cut(s)	937, 982
AcvI	CACGTG	1 cut(s)	456
AdeI	CACNNNGTG	2 cut(s)	456, 885
AfaI	GTAC	1 cut(s)	914
AfiI	CCNNNNNNNGG	2 cut(s)	62, 888
AflII	CTTAAG	1 cut(s)	705
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	6 cut(s)	18, 50, 85, 381, 474, 796
AjnI	CCWGG	3 cut(s)	832, 872, 881
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
AluBI	AGCT	8 cut(s)	41, 110, 204, 424, 704, 713, 770, 848
AluI	AGCT	8 cut(s)	41, 110, 204, 424, 704, 713, 770, 848
Alw21I	GWGCWC	2 cut(s)	772, 881
Alw26I	GTCTC	2 cut(s)	255, 712
Alw44I	GTGCAC	1 cut(s)	877
AlwNI	CAGNNNCTG	1 cut(s)	678
AoxI	GGCC	2 cut(s)	897, 924
ApaLI	GTGCAC	1 cut(s)	877
ApeKI	GCWGC	6 cut(s)	180, 342, 516, 701, 822, 845
ApoI	RAATTY	2 cut(s)	20, 393
AspS9I	GGNCC	3 cut(s)	897, 924, 957
AsuC2I	CCSGG	1 cut(s)	910
AsuNHI	GCTAGC	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	957
BaeGI	GKGCMC	2 cut(s)	534, 881
BanII	GRGCYC	1 cut(s)	772
BbrPI	CACGTG	1 cut(s)	456
Bbv12I	GWGCWC	2 cut(s)	772, 881
BbvI	GCAGC	6 cut(s)	167, 329, 503, 713, 809, 857
BccI	CCATC	3 cut(s)	342, 429, 915
BciT130I	CCWGG	3 cut(s)	834, 874, 883
BcnI	CCSGG	1 cut(s)	910
BcoDI	GTCTC	2 cut(s)	255, 712
BfaI	CTAG	2 cut(s)	57, 568
BfmI	CTRYAG	2 cut(s)	181, 928
BfrI	CTTAAG	1 cut(s)	705
BfuAI	ACCTGC	2 cut(s)	104, 879
BisI	GCNGC	6 cut(s)	181, 343, 517, 702, 823, 846
BlsI	GCNGC	6 cut(s)	182, 344, 518, 703, 824, 847
Bme1390I	CCNGG	4 cut(s)	834, 874, 883, 910
Bme18I	GGWCC	1 cut(s)	957
BmgT120I	GGNCC	3 cut(s)	897, 924, 957
BmiI	GGNNCC	4 cut(s)	136, 463, 727, 958
BmrFI	CCNGG	4 cut(s)	834, 874, 883, 910
BmrI	ACTGGG	2 cut(s)	261, 729
BmsI	GCATC	6 cut(s)	23, 448, 482, 638, 803, 968
BmtI	GCTAGC	1 cut(s)	571
BmuI	ACTGGG	2 cut(s)	261, 729
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
BpmI	CTGGAG	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	47, 756
BpuMI	CCSGG	1 cut(s)	910
BsaAI	YACGTR	2 cut(s)	90, 456
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	173, 266, 817
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 888
Bse1I	ACTGG	4 cut(s)	12, 256, 566, 735
BseBI	CCWGG	3 cut(s)	834, 874, 883
BseDI	CCNNGG	3 cut(s)	173, 266, 817
BseGI	GGATG	8 cut(s)	38, 239, 289, 353, 439, 440, 818, 939
BseLI	CCNNNNNNNGG	2 cut(s)	62, 888
BseMII	CTCAG	1 cut(s)	685
BseNI	ACTGG	4 cut(s)	12, 256, 566, 735
BseSI	GKGCMC	2 cut(s)	534, 881
BseXI	GCAGC	6 cut(s)	167, 329, 503, 713, 809, 857
BseYI	CCCAGC	1 cut(s)	713
BsgI	GTGCAG	3 cut(s)	433, 907, 913
BshFI	GGCC	2 cut(s)	899, 926
BsiHKAI	GWGCWC	2 cut(s)	772, 881
BsiSI	CCGG	1 cut(s)	910
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	2 cut(s)	62, 888
BsmAI	GTCTC	2 cut(s)	255, 712
BsmFI	GGGAC	1 cut(s)	970
BsnI	GGCC	2 cut(s)	899, 926
Bso31I	GGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	534, 772, 881
Bsp143I	GATC	2 cut(s)	286, 367
Bsp19I	CCATGG	1 cut(s)	817
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	899, 926
BspCNI	CTCAG	1 cut(s)	686
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	4 cut(s)	136, 463, 727, 958
BspMAI	CTGCAG	2 cut(s)	185, 932
BspMI	ACCTGC	2 cut(s)	104, 879
BspOI	GCTAGC	1 cut(s)	571
BspTI	CTTAAG	1 cut(s)	705
BspTNI	GGTCTC	1 cut(s)	255
BsrI	ACTGG	4 cut(s)	12, 256, 566, 735
BssECI	CCNNGG	3 cut(s)	173, 266, 817
BssMI	GATC	2 cut(s)	286, 367
BssNAI	GTATAC	2 cut(s)	93, 504
BssT1I	CCWWGG	3 cut(s)	173, 266, 817
Bst1107I	GTATAC	2 cut(s)	93, 504
Bst2UI	CCWGG	3 cut(s)	834, 874, 883
Bst4CI	ACNGT	2 cut(s)	149, 247
Bst6I	CTCTTC	1 cut(s)	636
BstAFI	CTTAAG	1 cut(s)	705
BstAPI	GCANNNNNTGC	1 cut(s)	885
BstBAI	YACGTR	2 cut(s)	90, 456
BstC8I	GCNNGC	2 cut(s)	569, 928
BstDEI	CTNAG	2 cut(s)	319, 694
BstDSI	CCRYGG	1 cut(s)	817
BstENI	CCTNNNNNAGG	2 cut(s)	60, 886
BstF5I	GGATG	8 cut(s)	38, 239, 289, 353, 439, 440, 818, 939
BstKTI	GATC	2 cut(s)	289, 370
BstMAI	GTCTC	2 cut(s)	255, 712
BstMBI	GATC	2 cut(s)	286, 367
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 189, 710, 822, 885
BstNI	CCWGG	3 cut(s)	834, 874, 883
BstSCI	CCNGG	4 cut(s)	832, 872, 881, 908
BstSFI	CTRYAG	2 cut(s)	181, 928
BstSLI	GKGCMC	2 cut(s)	534, 881
BstV1I	GCAGC	6 cut(s)	167, 329, 503, 713, 809, 857
BstZ17I	GTATAC	2 cut(s)	93, 504
BsuRI	GGCC	2 cut(s)	899, 926
BtgI	CCRYGG	1 cut(s)	817
BtsCI	GGATG	8 cut(s)	38, 239, 289, 353, 439, 440, 818, 939
BtsIMutI	CAGTG	3 cut(s)	243, 249, 988
BveI	ACCTGC	2 cut(s)	104, 879
Cac8I	GCNNGC	2 cut(s)	569, 928
CaiI	CAGNNNCTG	1 cut(s)	678
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	3 cut(s)	897, 924, 957
CsiI	ACCWGGT	1 cut(s)	881
Csp6I	GTAC	1 cut(s)	913
CviAII	CATG	2 cut(s)	278, 818
CviQI	GTAC	1 cut(s)	913
DdeI	CTNAG	2 cut(s)	319, 694
DpnI	GATC	2 cut(s)	288, 369
DpnII	GATC	2 cut(s)	286, 367
DraIII	CACNNNGTG	2 cut(s)	456, 885
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Ecl136II	GAGCTC	1 cut(s)	770
Eco130I	CCWWGG	3 cut(s)	173, 266, 817
Eco24I	GRGCYC	1 cut(s)	772
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	957
Eco53kI	GAGCTC	1 cut(s)	770
Eco57I	CTGAAG	2 cut(s)	937, 982
Eco72I	CACGTG	1 cut(s)	456
EcoICRI	GAGCTC	1 cut(s)	770
EcoNI	CCTNNNNNAGG	2 cut(s)	60, 886
EcoO109I	RGGNCCY	1 cut(s)	957
EcoRII	CCWGG	3 cut(s)	832, 872, 881
EcoT14I	CCWWGG	3 cut(s)	173, 266, 817
EcoT38I	GRGCYC	1 cut(s)	772
ErhI	CCWWGG	3 cut(s)	173, 266, 817
FaeI	CATG	2 cut(s)	281, 821
FaiI	YATR	5 cut(s)	93, 279, 504, 819, 843
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	1 cut(s)	970
FatI	CATG	2 cut(s)	277, 817
FblI	GTMKAC	3 cut(s)	92, 503, 685
Fnu4HI	GCNGC	6 cut(s)	181, 343, 517, 702, 823, 846
FokI	GGATG	8 cut(s)	45, 246, 276, 360, 426, 447, 825, 926
FriOI	GRGCYC	1 cut(s)	772
Fsp4HI	GCNGC	6 cut(s)	181, 343, 517, 702, 823, 846
FspBI	CTAG	2 cut(s)	57, 568
GluI	GCNGC	6 cut(s)	181, 343, 517, 702, 823, 846
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	899, 926
HapII	CCGG	1 cut(s)	910
Hin1II	CATG	2 cut(s)	281, 821
HincII	GTYRAC	3 cut(s)	124, 152, 524
HindII	GTYRAC	3 cut(s)	124, 152, 524
HinfI	GANTC	3 cut(s)	665, 675, 933
HpaII	CCGG	1 cut(s)	910
Hpy166II	GTNNAC	7 cut(s)	93, 124, 152, 504, 524, 686, 879
Hpy188I	TCNGA	2 cut(s)	326, 355
Hpy188III	TCNNGA	3 cut(s)	105, 278, 432
Hpy8I	GTNNAC	7 cut(s)	93, 124, 152, 504, 524, 686, 879
HpyAV	CCTTC	4 cut(s)	56, 125, 740, 957
HpyCH4III	ACNGT	2 cut(s)	149, 247
HpyCH4IV	ACGT	2 cut(s)	89, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 189, 710, 822, 885
HpyF3I	CTNAG	2 cut(s)	319, 694
HpySE526I	ACGT	2 cut(s)	89, 455
Hsp92II	CATG	2 cut(s)	281, 821
Kzo9I	GATC	2 cut(s)	286, 367
LmnI	GCTCC	2 cut(s)	107, 710
Lsp1109I	GCAGC	6 cut(s)	167, 329, 503, 713, 809, 857
LweI	GCATC	6 cut(s)	23, 448, 482, 638, 803, 968
MabI	ACCWGGT	1 cut(s)	881
MaeI	CTAG	2 cut(s)	57, 568
MaeII	ACGT	2 cut(s)	89, 455
MaeIII	GTNAC	4 cut(s)	143, 216, 236, 247
MalI	GATC	2 cut(s)	288, 369
MboI	GATC	2 cut(s)	286, 367
MboII	GAAGA	3 cut(s)	369, 653, 930
MhlI	GDGCHC	3 cut(s)	534, 772, 881
MluCI	AATT	3 cut(s)	20, 393, 469
MmeI	TCCRAC	1 cut(s)	211
MseI	TTAA	4 cut(s)	4, 706, 739, 808
MspCI	CTTAAG	1 cut(s)	705
MspI	CCGG	1 cut(s)	910
MspR9I	CCNGG	4 cut(s)	834, 874, 883, 910
MvaI	CCWGG	3 cut(s)	834, 874, 883
MwoI	GCNNNNNNNGC	5 cut(s)	177, 189, 710, 822, 885
NciI	CCSGG	1 cut(s)	910
NcoI	CCATGG	1 cut(s)	817
NdeII	GATC	2 cut(s)	286, 367
NheI	GCTAGC	1 cut(s)	567
NlaIII	CATG	2 cut(s)	281, 821
NlaIV	GGNNCC	4 cut(s)	136, 463, 727, 958
NmuCI	GTSAC	3 cut(s)	216, 236, 247
PagI	TCATGA	1 cut(s)	277
PaqCI	CACCTGC	1 cut(s)	879
PfeI	GAWTC	3 cut(s)	665, 675, 933
PkrI	GCNGC	6 cut(s)	182, 344, 518, 703, 824, 847
PmaCI	CACGTG	1 cut(s)	456
PmlI	CACGTG	1 cut(s)	456
Ppu21I	YACGTR	2 cut(s)	90, 456
PpuMI	RGGWCCY	1 cut(s)	957
Psp124BI	GAGCTC	1 cut(s)	772
Psp5II	RGGWCCY	1 cut(s)	957
Psp6I	CCWGG	3 cut(s)	832, 872, 881
PspCI	CACGTG	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	3 cut(s)	832, 872, 881
PspN4I	GGNNCC	4 cut(s)	136, 463, 727, 958
PspPI	GGNCC	3 cut(s)	897, 924, 957
PspPPI	RGGWCCY	1 cut(s)	957
PstI	CTGCAG	2 cut(s)	185, 932
PstNI	CAGNNNCTG	1 cut(s)	678
RsaI	GTAC	1 cut(s)	914
RsaNI	GTAC	1 cut(s)	913
SacI	GAGCTC	1 cut(s)	772
SaqAI	TTAA	4 cut(s)	4, 706, 739, 808
SatI	GCNGC	6 cut(s)	181, 343, 517, 702, 823, 846
Sau3AI	GATC	2 cut(s)	286, 367
Sau96I	GGNCC	3 cut(s)	897, 924, 957
ScrFI	CCNGG	4 cut(s)	834, 874, 883, 910
SduI	GDGCHC	3 cut(s)	534, 772, 881
SexAI	ACCWGGT	1 cut(s)	881
SfaNI	GCATC	6 cut(s)	23, 448, 482, 638, 803, 968
SfcI	CTRYAG	2 cut(s)	181, 928
SinI	GGWCC	1 cut(s)	957
SmlI	CTYRAG	3 cut(s)	26, 705, 771
SmoI	CTYRAG	3 cut(s)	26, 705, 771
Sse9I	AATT	3 cut(s)	20, 393, 469
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	2 cut(s)	57, 568
SstI	GAGCTC	1 cut(s)	772
StyD4I	CCNGG	4 cut(s)	832, 872, 881, 908
StyI	CCWWGG	3 cut(s)	173, 266, 817
TaaI	ACNGT	2 cut(s)	149, 247
TaiI	ACGT	2 cut(s)	92, 458
TasI	AATT	3 cut(s)	20, 393, 469
TfiI	GAWTC	3 cut(s)	665, 675, 933
Tru1I	TTAA	4 cut(s)	4, 706, 739, 808
Tru9I	TTAA	4 cut(s)	4, 706, 739, 808
TscAI	CASTG	3 cut(s)	250, 256, 995
TseFI	GTSAC	3 cut(s)	216, 236, 247
TseI	GCWGC	6 cut(s)	180, 342, 516, 701, 822, 845
Tsp45I	GTSAC	3 cut(s)	216, 236, 247
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	3 cut(s)	250, 256, 995
Vha464I	CTTAAG	1 cut(s)	705
VneI	GTGCAC	1 cut(s)	877
VpaK11BI	GGWCC	1 cut(s)	957
XagI	CCTNNNNNAGG	2 cut(s)	60, 886
XapI	RAATTY	2 cut(s)	20, 393
XmiI	GTMKAC	3 cut(s)	92, 503, 685
XspI	CTAG	2 cut(s)	57, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.