Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0031428

Physical Location & Seq

Genomic Coordinates Forward (+)

40461482 .. 40467960

Gene Structure 6479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG353800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGTTGTCATCTTTAACGCAGACAAATATAAGCTTGCCTTTCATTACTGCGACTGCAGATGGCCCCAAGCACATTGAGACAACACTTACAAGGGTCAAGTTTGAGGAGCTGTGTTCTGATCTCCTTGACAGACTTAAAACACCAGTTGAAACTTCGTTGAGGGATGCAAAACTCTCCTTTAAAGACCTAGATGAGGTAATACTTGTTGGTGGCTCAACCCGTATACCAGCTGTTCAGGAGCTTGTGAGGAAGTTAACTGGAAAGGAACCAAATGTTACAGTCAATCCTGATGAAGTTGTTGCCCTTGGGGCTGCAGTTCAGGCTGGTGTATTAGCTGGAGATGTGAGTGACATCGTATTGTTGGATGTGACACCACTGTCACTGGGTTTAGAGACTCTGGGTGGCGTCATGACAAAGATCATCCCAAGAAATACCACTCTCCCTACCTCTAAGTCGGAGGTGTTCTCAACGGCTGCAGATGGGCAGACAAGTGTGGAGATTAATGTCCTTCAAGGGGAGAGAGAATTTGTTAGAGATAACAAATCTCTTGGCAGTTTCCGTTTGGATGGTATCCCGCCTGCACCACGTGGGGTTCCTCAAATTGAAGTAAAGTTTGACATTGATGCCAATGGTATTCTCTCAGTATATGCTGTTGACAAGGGCACTGGCAAAAAGCAGGACATCACCATTACCGGTGCGAGCACATTGCCCAATGATGAGGTACAAAGAATGGTTAATGAAGCAGAGAAGTTTGCAAAGGAGGACAAGGAGAAGAGAGATGCCATTGACACAAAGAACCAGGCAGATTCCGTTGTCTACCAGACTGAGAAGCAGCTGAAGGAACTGGGAGACAAGGTTCCAGCCCCAGTTAAAGAGAAGGTTGAGGCAAAACTCGGAGAACTCAAGGAAGCTATTTCTGGGGGTTCAACCCAAGCTATTAAGGATGCCATGGCTGCTCTCAACCAGGAAGTCATGCAGCTGGGACAGTCCCTTTATAACCAGCCTGGTGCCCCTGGTACAGGCCCAACAGCACCCGGTGCTGAAGCTGGGCCTGGGCCTTCAGAGTCGTCATCATCATCCGGCAAGGGACCTGAAGGAGATGTTATCGATGCAGATTTCACCGACAGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010035 GO:0010038 GO:0015031 GO:0015833 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046686 GO:0046907 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

378

Amino Acids

40.01

Weight (kDa)

4.7

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	2 - 333	1.6e-132	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031428)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0009495.1_g000001
rosa_samantha	Rh7CG353800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	999
AasI	GACNNNNNNGTC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	1010
AccI	GTMKAC	2 cut(s)	226, 819
AciI	CCGC	1 cut(s)	578
AcsI	RAATTY	1 cut(s)	527
AcuI	CTGAAG	4 cut(s)	860, 1047, 1065, 1116
AcvI	CACGTG	1 cut(s)	590
AcyI	GRCGYC	1 cut(s)	408
AdeI	CACNNNGTG	2 cut(s)	590, 1040
AfaI	GTAC	2 cut(s)	726, 1021
AfiI	CCNNNNNNNGG	3 cut(s)	196, 517, 1022
AgeI	ACCGGT	1 cut(s)	695
AgsI	TTSAA	4 cut(s)	152, 515, 608, 930
AjnI	CCWGG	5 cut(s)	801, 966, 1006, 1015, 1054
AloI	GAACNNNNNNTCC	2 cut(s)	843, 875
Alw21I	GWGCWC	1 cut(s)	707
Alw26I	GTCTC	3 cut(s)	74, 389, 846
AoxI	GGCC	4 cut(s)	64, 1024, 1052, 1058
ApeKI	GCWGC	5 cut(s)	314, 476, 835, 956, 979
ApoI	RAATTY	1 cut(s)	527
AseI	ATTAAT	1 cut(s)	504
AsiGI	ACCGGT	1 cut(s)	695
AspS9I	GGNCC	5 cut(s)	65, 1025, 1052, 1058, 1091
AsuC2I	CCSGG	1 cut(s)	1038
AsuHPI	GGTGA	2 cut(s)	679, 1114
AvaII	GGWCC	1 cut(s)	1091
BaeGI	GKGCMC	2 cut(s)	668, 1015
BanI	GGYRCC	1 cut(s)	1010
BbrPI	CACGTG	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	707
BbvI	GCAGC	5 cut(s)	301, 463, 847, 943, 991
BccI	CCATC	3 cut(s)	56, 476, 563
BceAI	ACGGC	1 cut(s)	489
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	5 cut(s)	803, 968, 1008, 1017, 1056
BciVI	GTATCC	1 cut(s)	584
BcnI	CCSGG	1 cut(s)	1038
BcoDI	GTCTC	3 cut(s)	74, 389, 846
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	3 cut(s)	57, 315, 477
BfuI	GTATCC	1 cut(s)	584
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	5 cut(s)	315, 477, 836, 957, 980
BlsI	GCNGC	5 cut(s)	316, 478, 837, 958, 981
Bme1390I	CCNGG	6 cut(s)	803, 968, 1008, 1017, 1038, 1056
Bme18I	GGWCC	1 cut(s)	1091
BmgT120I	GGNCC	5 cut(s)	65, 1025, 1052, 1058, 1091
BmiI	GGNNCC	6 cut(s)	67, 270, 597, 861, 1012, 1092
BmrFI	CCNGG	6 cut(s)	803, 968, 1008, 1017, 1038, 1056
BmrI	ACTGGG	3 cut(s)	395, 857, 863
BmsI	GCATC	5 cut(s)	157, 616, 772, 937, 1102
BmuI	ACTGGG	3 cut(s)	395, 857, 863
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	890
BpuMI	CCSGG	1 cut(s)	1038
Bsa29I	ATCGAT	1 cut(s)	1110
BsaAI	YACGTR	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	4 cut(s)	307, 951, 1015, 1055
BsaWI	WCCGGW	1 cut(s)	695
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 517, 1022
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	6 cut(s)	146, 265, 390, 673, 852, 869
Bse3DI	GCAATG	1 cut(s)	707
BseBI	CCWGG	5 cut(s)	803, 968, 1008, 1017, 1056
BseCI	ATCGAT	1 cut(s)	1110
BseDI	CCNNGG	4 cut(s)	307, 951, 1015, 1055
BseGI	GGATG	6 cut(s)	172, 373, 423, 574, 952, 1079
BseLI	CCNNNNNNNGG	3 cut(s)	196, 517, 1022
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	2 cut(s)	657, 819
BseNI	ACTGG	6 cut(s)	146, 265, 390, 673, 852, 869
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	2 cut(s)	668, 1015
BseXI	GCAGC	5 cut(s)	301, 463, 847, 943, 991
BseYI	CCCAGC	2 cut(s)	982, 1049
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	4 cut(s)	66, 1026, 1054, 1060
BshNI	GGYRCC	1 cut(s)	1010
BshTI	ACCGGT	1 cut(s)	695
BshVI	ATCGAT	1 cut(s)	1110
BsiHKAI	GWGCWC	1 cut(s)	707
BsiSI	CCGG	3 cut(s)	696, 1038, 1083
BslFI	GGGAC	3 cut(s)	976, 999, 1104
BslI	CCNNNNNNNGG	3 cut(s)	196, 517, 1022
BsmAI	GTCTC	3 cut(s)	74, 389, 846
BsmFI	GGGAC	3 cut(s)	976, 999, 1104
BsnI	GGCC	4 cut(s)	66, 1026, 1054, 1060
Bsp1286I	GDGCHC	3 cut(s)	668, 707, 1015
Bsp143I	GATC	2 cut(s)	121, 420
Bsp19I	CCATGG	1 cut(s)	951
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	4 cut(s)	66, 1026, 1054, 1060
BspCNI	CTCAG	2 cut(s)	656, 820
BspDI	ATCGAT	1 cut(s)	1110
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	6 cut(s)	67, 270, 597, 861, 1012, 1092
BspMAI	CTGCAG	3 cut(s)	61, 319, 481
BspT107I	GGYRCC	1 cut(s)	1010
BsrDI	GCAATG	1 cut(s)	707
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	6 cut(s)	146, 265, 390, 673, 852, 869
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	4 cut(s)	307, 951, 1015, 1055
BssMI	GATC	2 cut(s)	121, 420
BssNAI	GTATAC	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	307, 951
Bst1107I	GTATAC	1 cut(s)	227
Bst2UI	CCWGG	5 cut(s)	803, 968, 1008, 1017, 1056
Bst4CI	ACNGT	3 cut(s)	283, 381, 990
Bst6I	CTCTTC	1 cut(s)	770
BstACI	GRCGYC	1 cut(s)	408
BstAPI	GCANNNNNTGC	1 cut(s)	1040
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	3 cut(s)	38, 582, 703
BstDEI	CTNAG	3 cut(s)	453, 643, 828
BstDSI	CCRYGG	1 cut(s)	951
BstENI	CCTNNNNNAGG	2 cut(s)	194, 1020
BstF5I	GGATG	6 cut(s)	172, 373, 423, 574, 952, 1079
BstKTI	GATC	2 cut(s)	124, 423
BstMAI	GTCTC	3 cut(s)	74, 389, 846
BstMBI	GATC	2 cut(s)	121, 420
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 323, 956, 1040
BstNI	CCWGG	5 cut(s)	803, 968, 1008, 1017, 1056
BstSCI	CCNGG	6 cut(s)	801, 966, 1006, 1015, 1036, 1054
BstSFI	CTRYAG	3 cut(s)	57, 315, 477
BstSLI	GKGCMC	2 cut(s)	668, 1015
BstV1I	GCAGC	5 cut(s)	301, 463, 847, 943, 991
BstZ17I	GTATAC	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	1110
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	4 cut(s)	66, 1026, 1054, 1060
BsuTUI	ATCGAT	1 cut(s)	1110
BtgI	CCRYGG	1 cut(s)	951
BtsCI	GGATG	6 cut(s)	172, 373, 423, 574, 952, 1079
BtsIMutI	CAGTG	3 cut(s)	377, 383, 666
Cac8I	GCNNGC	3 cut(s)	38, 582, 703
CciI	TCATGA	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	695
Cfr13I	GGNCC	5 cut(s)	65, 1025, 1052, 1058, 1091
ClaI	ATCGAT	1 cut(s)	1110
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	725, 1020
CspAI	ACCGGT	1 cut(s)	695
CviAII	CATG	3 cut(s)	412, 952, 976
CviQI	GTAC	2 cut(s)	725, 1020
DdeI	CTNAG	3 cut(s)	453, 643, 828
DpnI	GATC	2 cut(s)	123, 422
DpnII	GATC	2 cut(s)	121, 420
DraI	TTTAAA	1 cut(s)	184
DraIII	CACNNNGTG	2 cut(s)	590, 1040
DrdI	GACNNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
Eco130I	CCWWGG	2 cut(s)	307, 951
Eco47I	GGWCC	1 cut(s)	1091
Eco57I	CTGAAG	4 cut(s)	860, 1047, 1065, 1116
Eco72I	CACGTG	1 cut(s)	590
EcoNI	CCTNNNNNAGG	2 cut(s)	194, 1020
EcoO109I	RGGNCCY	1 cut(s)	1091
EcoRII	CCWGG	5 cut(s)	801, 966, 1006, 1015, 1054
EcoT14I	CCWWGG	2 cut(s)	307, 951
ErhI	CCWWGG	2 cut(s)	307, 951
FaeI	CATG	3 cut(s)	415, 955, 979
FaiI	YATR	8 cut(s)	32, 227, 413, 649, 651, 953, 977, 999
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	3 cut(s)	976, 999, 1104
FatI	CATG	3 cut(s)	411, 951, 975
FauI	CCCGC	1 cut(s)	585
FblI	GTMKAC	2 cut(s)	226, 819
Fnu4HI	GCNGC	5 cut(s)	315, 477, 836, 957, 980
FokI	GGATG	6 cut(s)	179, 380, 410, 581, 959, 1066
Fsp4HI	GCNGC	5 cut(s)	315, 477, 836, 957, 980
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	5 cut(s)	315, 477, 836, 957, 980
GsaI	CCCAGC	2 cut(s)	986, 1053
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	66, 1026, 1054, 1060
HapII	CCGG	3 cut(s)	696, 1038, 1083
HgaI	GACGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	3 cut(s)	415, 955, 979
HincII	GTYRAC	2 cut(s)	258, 658
HindII	GTYRAC	2 cut(s)	258, 658
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	3 cut(s)	397, 809, 1067
HpaI	GTTAAC	1 cut(s)	258
HpaII	CCGG	3 cut(s)	696, 1038, 1083
HphI	GGTGA	2 cut(s)	679, 1114
Hpy166II	GTNNAC	4 cut(s)	227, 258, 658, 820
Hpy188I	TCNGA	4 cut(s)	121, 460, 899, 1066
Hpy188III	TCNNGA	3 cut(s)	239, 290, 412
Hpy8I	GTNNAC	4 cut(s)	227, 258, 658, 820
HpyAV	CCTTC	5 cut(s)	521, 835, 874, 1071, 1091
HpyCH4III	ACNGT	3 cut(s)	283, 381, 990
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	8 cut(s)	59, 170, 317, 479, 584, 758, 979, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 323, 956, 1040
HpyF3I	CTNAG	3 cut(s)	453, 643, 828
HpySE526I	ACGT	1 cut(s)	589
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	415, 955, 979
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	121, 420
LmnI	GCTCC	2 cut(s)	109, 241
Lsp1109I	GCAGC	5 cut(s)	301, 463, 847, 943, 991
LweI	GCATC	5 cut(s)	157, 616, 772, 937, 1102
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	589
MaeIII	GTNAC	4 cut(s)	277, 350, 370, 381
MalI	GATC	2 cut(s)	123, 422
MboI	GATC	2 cut(s)	121, 420
MboII	GAAGA	1 cut(s)	787
MhlI	GDGCHC	3 cut(s)	668, 707, 1015
MluCI	AATT	2 cut(s)	527, 603
MlyI	GAGTC	2 cut(s)	391, 1076
MmeI	TCCRAC	2 cut(s)	345, 438
MseI	TTAA	8 cut(s)	17, 138, 183, 257, 504, 738, 873, 942
MspA1I	CMGCKG	3 cut(s)	233, 838, 982
MspI	CCGG	3 cut(s)	696, 1038, 1083
MspR9I	CCNGG	6 cut(s)	803, 968, 1008, 1017, 1038, 1056
MvaI	CCWGG	5 cut(s)	803, 968, 1008, 1017, 1056
MwoI	GCNNNNNNNGC	4 cut(s)	311, 323, 956, 1040
NciI	CCSGG	1 cut(s)	1038
NcoI	CCATGG	1 cut(s)	951
NdeII	GATC	2 cut(s)	121, 420
NlaIII	CATG	3 cut(s)	415, 955, 979
NlaIV	GGNNCC	6 cut(s)	67, 270, 597, 861, 1012, 1092
NmuCI	GTSAC	3 cut(s)	350, 370, 381
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	809
PinAI	ACCGGT	1 cut(s)	695
PkrI	GCNGC	5 cut(s)	316, 478, 837, 958, 981
PleI	GAGTC	2 cut(s)	391, 1075
PmaCI	CACGTG	1 cut(s)	590
PmlI	CACGTG	1 cut(s)	590
PpsI	GAGTC	2 cut(s)	391, 1075
Ppu21I	YACGTR	1 cut(s)	590
PpuMI	RGGWCCY	1 cut(s)	1091
PshBI	ATTAAT	1 cut(s)	504
PsiI	TTATAA	1 cut(s)	999
Psp5II	RGGWCCY	1 cut(s)	1091
Psp6I	CCWGG	5 cut(s)	801, 966, 1006, 1015, 1054
PspCI	CACGTG	1 cut(s)	590
PspFI	CCCAGC	2 cut(s)	982, 1049
PspGI	CCWGG	5 cut(s)	801, 966, 1006, 1015, 1054
PspN4I	GGNNCC	6 cut(s)	67, 270, 597, 861, 1012, 1092
PspPI	GGNCC	5 cut(s)	65, 1025, 1052, 1058, 1091
PspPPI	RGGWCCY	1 cut(s)	1091
PstI	CTGCAG	3 cut(s)	61, 319, 481
PvuII	CAGCTG	3 cut(s)	233, 838, 982
RsaI	GTAC	2 cut(s)	726, 1021
RsaNI	GTAC	2 cut(s)	725, 1020
SaqAI	TTAA	8 cut(s)	17, 138, 183, 257, 504, 738, 873, 942
SatI	GCNGC	5 cut(s)	315, 477, 836, 957, 980
Sau3AI	GATC	2 cut(s)	121, 420
Sau96I	GGNCC	5 cut(s)	65, 1025, 1052, 1058, 1091
SchI	GAGTC	2 cut(s)	391, 1076
ScrFI	CCNGG	6 cut(s)	803, 968, 1008, 1017, 1038, 1056
SduI	GDGCHC	3 cut(s)	668, 707, 1015
SfaNI	GCATC	5 cut(s)	157, 616, 772, 937, 1102
SfcI	CTRYAG	3 cut(s)	57, 315, 477
SinI	GGWCC	1 cut(s)	1091
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
Sse9I	AATT	2 cut(s)	527, 603
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	6 cut(s)	801, 966, 1006, 1015, 1036, 1054
StyI	CCWWGG	2 cut(s)	307, 951
TaaI	ACNGT	3 cut(s)	283, 381, 990
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	1 cut(s)	1110
TasI	AATT	2 cut(s)	527, 603
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	8 cut(s)	17, 138, 183, 257, 504, 738, 873, 942
Tru9I	TTAA	8 cut(s)	17, 138, 183, 257, 504, 738, 873, 942
TscAI	CASTG	3 cut(s)	384, 390, 673
TseFI	GTSAC	3 cut(s)	350, 370, 381
TseI	GCWGC	5 cut(s)	314, 476, 835, 956, 979
Tsp45I	GTSAC	3 cut(s)	350, 370, 381
TspDTI	ATGAA	3 cut(s)	34, 309, 756
TspGWI	ACGGA	2 cut(s)	551, 802
TspRI	CASTG	3 cut(s)	384, 390, 673
VpaK11BI	GGWCC	1 cut(s)	1091
VspI	ATTAAT	1 cut(s)	504
XagI	CCTNNNNNAGG	2 cut(s)	194, 1020
XapI	RAATTY	1 cut(s)	527
XmiI	GTMKAC	2 cut(s)	226, 819
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.