Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010851.1

Orthogroup ID

OG0025630

Physical Location & Seq

Genomic Coordinates Reverse (-)

19501 .. 20710

Gene Structure 1210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010851.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgcaagaagccagagtcacaacacatttagtggtcaaggccctcaaagattctagcttgcttttggatgctgatgatgatggatgtgtaacgatgcatgatgtcgttcgggatgtggcaatactaatttctttatctaaagacggccaacggtttttggtaaaatcaggatgtgaattaaagagttggccaatgattgctgaacacaatgactattctgcaatctcactaatgaagaatgaaattcgcaagctacccgaagagttggtcttagatcttagccacactagaatatcgttcgtaccccagtcattcagtctcctaactaacctccagactttgtatttagattgttgctggaaagtaatggacatttctattttcaaaaaccttaaaaagctagagattcttagtatgagatgttatccccttgaggaattgtcgagagatataggacagttgaccaatctaaggatgctagatgtcagtgctagtagattttcggttggacatattgttagaattccatcaaaagtgatatcaaagttgcatagattagaagaactgtacatgcaatgtggatttttgtactggggaagtcaaattgagggagaaggagaagaaaccaatattggctttgatgaggtgactgggttatcgtatttaaacattttgaaggtttgcatatctgatgcaaaatgcatccctaaaagtgttgagttcgaaccgagttgggctcactttgatatatgtatccgcagacgaaaagagccggaagtttctggatatggtcctaattattcaagatccttgattcttgacacaaccatcagtaccttaccagattggtttatcaatgtagtgacaaagcaaacagaaaaggtacaatatgaacttcgcaaggggtttaatgggtttaataacattctcgtggaatatgaccgtgggagattacatggactgaaggttctctgtgtgattggtcccaatgagaacttgaaagagttgatgaactcaataacatgggttccaaaagaacctgtgttcaagaacttggaagagttgcatctggaatacctgtatgcatggcttgaaggagctatctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

369

Amino Acids

42.32

Weight (kDa)

5.69

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025630)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0009227.1_g000013 Rmu_sc0010851.1_g000006
rosa_roxburghii	Rroxscaffold_1G00037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	757
AclWI	GGATC	1 cut(s)	801
AcoI	YGGCCR	2 cut(s)	145, 188
AcsI	RAATTY	2 cut(s)	243, 522
AcuI	CTGAAG	1 cut(s)	983
AfaI	GTAC	5 cut(s)	303, 569, 590, 835, 885
AfiI	CCNNNNNNNGG	1 cut(s)	471
AgsI	TTSAA	6 cut(s)	385, 676, 804, 1000, 1048, 1094
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AloI	GAACNNNNNNTCC	2 cut(s)	951, 983
AluBI	AGCT	4 cut(s)	57, 253, 400, 1100
AluI	AGCT	4 cut(s)	57, 253, 400, 1100
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	801
AoxI	GGCC	3 cut(s)	39, 145, 188
ApoI	RAATTY	2 cut(s)	243, 522
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AspS9I	GGNCC	3 cut(s)	40, 791, 983
AsuHPI	GGTGA	1 cut(s)	658
AsuII	TTCGAA	1 cut(s)	723
AvaII	GGWCC	2 cut(s)	791, 983
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	739
BauI	CACGAG	1 cut(s)	929
BccI	CCATC	3 cut(s)	74, 535, 836
BceAI	ACGGC	1 cut(s)	160
BciVI	GTATCC	1 cut(s)	764
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	5 cut(s)	54, 288, 401, 479, 492
BfuI	GTATCC	1 cut(s)	764
BglII	AGATCT	1 cut(s)	274
Bme18I	GGWCC	2 cut(s)	791, 983
BmgT120I	GGNCC	3 cut(s)	40, 791, 983
BmiI	GGNNCC	2 cut(s)	985, 1029
BmrI	ACTGGG	3 cut(s)	301, 601, 660
BmsI	GCATC	6 cut(s)	58, 84, 465, 682, 711, 1075
BmuI	ACTGGG	3 cut(s)	301, 601, 660
BplI	GAGNNNNNCTC	2 cut(s)	721, 753
BpmI	CTGGAG	1 cut(s)	317
Bpu14I	TTCGAA	1 cut(s)	723
BpuEI	CTTGAG	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	943
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	3 cut(s)	307, 596, 655
Bse3DI	GCAATG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	943
BseGI	GGATG	6 cut(s)	73, 89, 118, 176, 480, 702
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMI	GCAATG	1 cut(s)	581
BseNI	ACTGG	3 cut(s)	307, 596, 655
BshFI	GGCC	3 cut(s)	41, 147, 190
BsiSI	CCGG	1 cut(s)	773
BslFI	GGGAC	1 cut(s)	969
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	969
BsnI	GGCC	3 cut(s)	41, 147, 190
Bsp119I	TTCGAA	1 cut(s)	723
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	2 cut(s)	274, 806
BspACI	CCGC	1 cut(s)	757
BspANI	GGCC	3 cut(s)	41, 147, 190
BspLI	GGNNCC	2 cut(s)	985, 1029
BspPI	GGATC	1 cut(s)	801
BspT104I	TTCGAA	1 cut(s)	723
BsrDI	GCAATG	1 cut(s)	581
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	307, 596, 655
BssECI	CCNNGG	1 cut(s)	943
BssMI	GATC	2 cut(s)	274, 806
BssSI	CACGAG	1 cut(s)	929
Bst2BI	CACGAG	1 cut(s)	929
Bst4CI	ACNGT	4 cut(s)	153, 459, 567, 944
Bst6I	CTCTTC	2 cut(s)	255, 1053
BstAUI	TGTACA	1 cut(s)	567
BstBI	TTCGAA	1 cut(s)	723
BstC8I	GCNNGC	2 cut(s)	59, 251
BstDEI	CTNAG	4 cut(s)	271, 278, 410, 470
BstDSI	CCRYGG	1 cut(s)	943
BstF5I	GGATG	6 cut(s)	73, 89, 118, 176, 480, 702
BstKTI	GATC	2 cut(s)	277, 809
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	274, 806
BstNSI	RCATGY	1 cut(s)	574
BstX2I	RGATCY	2 cut(s)	274, 806
BstYI	RGATCY	2 cut(s)	274, 806
BsuI	GTATCC	1 cut(s)	764
BsuRI	GGCC	3 cut(s)	41, 147, 190
BtgI	CCRYGG	1 cut(s)	943
BtsCI	GGATG	6 cut(s)	73, 89, 118, 176, 480, 702
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	2 cut(s)	59, 251
Cfr13I	GGNCC	3 cut(s)	40, 791, 983
Csp6I	GTAC	5 cut(s)	302, 568, 589, 834, 884
CviAII	CATG	5 cut(s)	98, 571, 956, 1023, 1086
CviQI	GTAC	5 cut(s)	302, 568, 589, 834, 884
DdeI	CTNAG	4 cut(s)	271, 278, 410, 470
DpnI	GATC	2 cut(s)	276, 808
DpnII	GATC	2 cut(s)	274, 806
DraI	TTTAAA	1 cut(s)	666
EaeI	YGGCCR	2 cut(s)	145, 188
Eam1104I	CTCTTC	2 cut(s)	255, 1053
EarI	CTCTTC	2 cut(s)	255, 1053
Eco24I	GRGCYC	1 cut(s)	739
Eco32I	GATATC	1 cut(s)	540
Eco47I	GGWCC	2 cut(s)	791, 983
Eco57I	CTGAAG	1 cut(s)	983
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	540
EcoT22I	ATGCAT	3 cut(s)	99, 704, 1087
EcoT38I	GRGCYC	1 cut(s)	739
FaeI	CATG	5 cut(s)	101, 574, 959, 1026, 1089
FaqI	GGGAC	1 cut(s)	969
FatI	CATG	5 cut(s)	97, 570, 955, 1022, 1085
FokI	GGATG	6 cut(s)	80, 96, 125, 183, 487, 689
FriOI	GRGCYC	1 cut(s)	739
FspBI	CTAG	5 cut(s)	54, 288, 401, 479, 492
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	3 cut(s)	41, 147, 190
HapII	CCGG	1 cut(s)	773
Hin1II	CATG	5 cut(s)	101, 574, 959, 1026, 1089
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	4 cut(s)	15, 50, 406, 814
HpaII	CCGG	1 cut(s)	773
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	1 cut(s)	462
Hpy188I	TCNGA	1 cut(s)	691
Hpy188III	TCNNGA	9 cut(s)	110, 168, 334, 444, 783, 804, 818, 1048, 1070
Hpy8I	GTNNAC	1 cut(s)	462
HpyAV	CCTTC	4 cut(s)	608, 670, 958, 1088
HpyCH4III	ACNGT	4 cut(s)	153, 459, 567, 944
HpyF3I	CTNAG	4 cut(s)	271, 278, 410, 470
Hsp92II	CATG	5 cut(s)	101, 574, 959, 1026, 1089
Kzo9I	GATC	2 cut(s)	274, 806
LmnI	GCTCC	1 cut(s)	1097
LweI	GCATC	6 cut(s)	58, 84, 465, 682, 711, 1075
MaeI	CTAG	5 cut(s)	54, 288, 401, 479, 492
MaeIII	GTNAC	4 cut(s)	16, 88, 646, 862
MalI	GATC	2 cut(s)	276, 808
MboI	GATC	2 cut(s)	274, 806
MboII	GAAGA	5 cut(s)	247, 272, 572, 632, 1070
MflI	RGATCY	2 cut(s)	274, 806
MhlI	GDGCHC	1 cut(s)	739
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	7 cut(s)	126, 176, 243, 437, 522, 603, 796
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	5 cut(s)	53, 341, 427, 601, 637
Mox20I	TGGCCA	1 cut(s)	190
Mph1103I	ATGCAT	3 cut(s)	99, 704, 1087
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	5 cut(s)	179, 393, 665, 909, 918
MslI	CAYNNNNRTG	1 cut(s)	929
Msp20I	TGGCCA	1 cut(s)	190
MspI	CCGG	1 cut(s)	773
NdeII	GATC	2 cut(s)	274, 806
NlaIII	CATG	5 cut(s)	101, 574, 959, 1026, 1089
NlaIV	GGNNCC	2 cut(s)	985, 1029
NmuCI	GTSAC	3 cut(s)	16, 646, 862
NsiI	ATGCAT	3 cut(s)	99, 704, 1087
NspI	RCATGY	1 cut(s)	574
NspV	TTCGAA	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	50, 406, 814
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	985, 1029
PspPI	GGNCC	3 cut(s)	40, 791, 983
PsuI	RGATCY	2 cut(s)	274, 806
RsaI	GTAC	5 cut(s)	303, 569, 590, 835, 885
RsaNI	GTAC	5 cut(s)	302, 568, 589, 834, 884
RseI	CAYNNNNRTG	1 cut(s)	929
SaqAI	TTAA	5 cut(s)	179, 393, 665, 909, 918
Sau3AI	GATC	2 cut(s)	274, 806
Sau96I	GGNCC	3 cut(s)	40, 791, 983
SchI	GAGTC	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	6 cut(s)	58, 84, 465, 682, 711, 1075
SfuI	TTCGAA	1 cut(s)	723
SinI	GGWCC	2 cut(s)	791, 983
SmiMI	CAYNNNNRTG	1 cut(s)	929
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	7 cut(s)	126, 176, 243, 437, 522, 603, 796
SsiI	CCGC	1 cut(s)	757
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	5 cut(s)	54, 288, 401, 479, 492
TaaI	ACNGT	4 cut(s)	153, 459, 567, 944
TaqI	TCGA	2 cut(s)	443, 723
TasI	AATT	7 cut(s)	126, 176, 243, 437, 522, 603, 796
TatI	WGTACW	2 cut(s)	567, 588
TfiI	GAWTC	3 cut(s)	50, 406, 814
Tru1I	TTAA	5 cut(s)	179, 393, 665, 909, 918
Tru9I	TTAA	5 cut(s)	179, 393, 665, 909, 918
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	3 cut(s)	16, 646, 862
Tsp45I	GTSAC	3 cut(s)	16, 646, 862
TspDTI	ATGAA	4 cut(s)	248, 255, 906, 1025
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	2 cut(s)	791, 983
XapI	RAATTY	2 cut(s)	243, 522
XceI	RCATGY	1 cut(s)	574
XspI	CTAG	5 cut(s)	54, 288, 401, 479, 492
Zsp2I	ATGCAT	3 cut(s)	99, 704, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.