Rmu_sc0011237.1_g000012

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011237.1
OG0029640
Physical Location & Seq
Forward (+)
30757 .. 31482
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011237.1_g000012.1.cds

Sequence Viewer

Length: 726 bp
atgatccgcccgcctaaagcagtccctatccgagaccttgacgcagttctatctgctagctggacggatcatcgacaacgcctttattggactgtaacgatgaaggtactcctttcgaacgagtcaactgcctactttcagatgacaacatcccaaccggacccaaaccaactcaacaagctactcccatgtgagttggaatgtgttgtcgactttgttcttgcagtccaagccaacatctttgactgtggcggcatgactataggagtgtgcatctcgcacaaaatcgccgacgccttgtcactagtcatgtttctaaacccttgggcttccgtttcccgacgagataattgtaattacacagctcccgcttttgacttggctacgttcttcccgccgagatccatatccgggttcaaaccaaggactggaatcgcaagagacaaaatcgttactaaacgattcgttttcagcgcctccaccgttgcttctctccgaacaaaatacacgacatctgcaactgacagacgccctactcgtatcgaggctctgtcagcatttgtatggagccgtttcttggcttccatgcaaggaaagcccaactcggacatggtttacaaagttctccacgcatgcagtcaacctacgaaccagaatggaccaggcgcttccagagcatcatttcggaaacgtgagccggttcgcgaaggcgacgacgtcgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

241

Amino Acids

26.89

Weight (kDa)

9.56

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0333661
rosa_multiflora Rmu_sc0011237.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 720
AccB7I CCANNNNNTGG 1 cut(s) 428
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 705
AciI CCGC 5 cut(s) 7, 11, 252, 369, 395
AclWI GGATC 2 cut(s) 75, 396
AcyI GRCGYC 3 cut(s) 294, 529, 717
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 3 cut(s) 411, 428, 577
AgsI TTSAA 1 cut(s) 418
AhdI GACNNNNNGTC 1 cut(s) 298
AhlI ACTAGT 1 cut(s) 304
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 3 cut(s) 60, 181, 365
AluI AGCT 3 cut(s) 60, 181, 365
Alw26I GTCTC 2 cut(s) 27, 435
AlwI GGATC 2 cut(s) 75, 396
AspLEI GCGC 2 cut(s) 476, 668
AspS9I GGNCC 2 cut(s) 160, 659
AsuC2I CCSGG 1 cut(s) 412
AsuII TTCGAA 1 cut(s) 116
AsuNHI GCTAGC 1 cut(s) 56
AvaII GGWCC 2 cut(s) 160, 659
BceAI ACGGC 1 cut(s) 555
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 1 cut(s) 663
BcnI CCSGG 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 27, 435
BcuI ACTAGT 1 cut(s) 304
BfaI CTAG 2 cut(s) 57, 305
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 2 cut(s) 477, 669
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 412, 663
Bme18I GGWCC 2 cut(s) 160, 659
BmeRI GACNNNNNGTC 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 160, 659
BmiI GGNNCC 2 cut(s) 162, 569
BmrFI CCNGG 2 cut(s) 412, 663
BmsI GCATC 2 cut(s) 282, 686
BmtI GCTAGC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 406
BsaHI GRCGYC 3 cut(s) 294, 529, 717
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 323, 422
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 3 cut(s) 411, 428, 577
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 406
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 323, 422
BseGI GGATG 1 cut(s) 149
BseJI GATNNNNATC 1 cut(s) 406
BseLI CCNNNNNNNGG 3 cut(s) 411, 428, 577
BseNI ACTGG 1 cut(s) 433
Bsh1236I CGCG 1 cut(s) 705
BsiSI CCGG 3 cut(s) 158, 411, 698
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 3 cut(s) 411, 428, 577
BsmAI GTCTC 2 cut(s) 27, 435
BsmFI GGGAC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 116
Bsp143I GATC 3 cut(s) 3, 67, 401
Bsp68I TCGCGA 1 cut(s) 705
BspACI CCGC 5 cut(s) 7, 11, 252, 369, 395
BspFNI CGCG 1 cut(s) 705
BspLI GGNNCC 2 cut(s) 162, 569
BspOI GCTAGC 1 cut(s) 60
BspPI GGATC 2 cut(s) 75, 396
BspT104I TTCGAA 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 697
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 2 cut(s) 323, 422
BssMI GATC 3 cut(s) 3, 67, 401
BssNI GRCGYC 3 cut(s) 294, 529, 717
BssT1I CCWWGG 2 cut(s) 323, 422
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 3 cut(s) 94, 248, 484
BstACI GRCGYC 3 cut(s) 294, 529, 717
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 11, 58, 634
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 705
BstH2I RGCGCY 2 cut(s) 477, 669
BstHHI GCGC 2 cut(s) 476, 668
BstKTI GATC 3 cut(s) 6, 70, 404
BstMAI GTCTC 2 cut(s) 27, 435
BstMBI GATC 3 cut(s) 3, 67, 401
BstMWI GCNNNNNNNGC 4 cut(s) 230, 554, 595, 674
BstNI CCWGG 1 cut(s) 663
BstNSI RCATGY 1 cut(s) 636
BstSCI CCNGG 2 cut(s) 410, 661
BstSFI CTRYAG 1 cut(s) 261
BstUI CGCG 1 cut(s) 705
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BtsCI GGATG 1 cut(s) 149
BtuMI TCGCGA 1 cut(s) 705
Cac8I GCNNGC 3 cut(s) 11, 58, 634
CfoI GCGC 2 cut(s) 476, 668
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 2 cut(s) 160, 659
CseI GACGC 3 cut(s) 50, 302, 537
Csp6I GTAC 1 cut(s) 107
CviAII CATG 6 cut(s) 189, 256, 310, 586, 610, 633
CviQI GTAC 1 cut(s) 107
DpnI GATC 3 cut(s) 5, 69, 403
DpnII GATC 3 cut(s) 3, 67, 401
DriI GACNNNNNGTC 1 cut(s) 298
Eam1105I GACNNNNNGTC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 323, 422
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 160, 659
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 2 cut(s) 323, 422
ErhI CCWWGG 2 cut(s) 323, 422
FaeI CATG 6 cut(s) 192, 259, 313, 589, 613, 636
FaiI YATR 9 cut(s) 190, 257, 263, 311, 407, 565, 587, 611, 634
FaqI GGGAC 1 cut(s) 8
FatI CATG 6 cut(s) 188, 255, 309, 585, 609, 632
FauI CCCGC 3 cut(s) 18, 376, 402
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 2 cut(s) 57, 305
GlaI GCGC 2 cut(s) 475, 667
GluI GCNGC 1 cut(s) 253
HaeII RGCGCY 2 cut(s) 477, 669
HapII CCGG 3 cut(s) 158, 411, 698
HgaI GACGC 3 cut(s) 50, 302, 537
HhaI GCGC 2 cut(s) 476, 668
Hin1I GRCGYC 3 cut(s) 294, 529, 717
Hin1II CATG 6 cut(s) 192, 259, 313, 589, 613, 636
Hin6I GCGC 2 cut(s) 474, 666
HinP1I GCGC 2 cut(s) 474, 666
HincII GTYRAC 3 cut(s) 126, 211, 641
HindII GTYRAC 3 cut(s) 126, 211, 641
HinfI GANTC 3 cut(s) 122, 432, 462
HpaII CCGG 3 cut(s) 158, 411, 698
Hpy166II GTNNAC 4 cut(s) 126, 211, 616, 641
Hpy188I TCNGA 5 cut(s) 32, 141, 497, 607, 687
Hpy188III TCNNGA 3 cut(s) 339, 672, 704
Hpy8I GTNNAC 4 cut(s) 126, 211, 616, 641
Hpy99I CGWCG 5 cut(s) 296, 345, 716, 719, 722
HpyAV CCTTC 2 cut(s) 97, 701
HpyCH4III ACNGT 3 cut(s) 94, 248, 484
HpyCH4IV ACGT 3 cut(s) 386, 691, 717
HpyCH4V TGCA 5 cut(s) 224, 273, 518, 589, 636
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 554, 595, 674
HpySE526I ACGT 3 cut(s) 386, 691, 717
Hsp92I GRCGYC 3 cut(s) 294, 529, 717
Hsp92II CATG 6 cut(s) 192, 259, 313, 589, 613, 636
HspAI GCGC 2 cut(s) 474, 666
Kzo9I GATC 3 cut(s) 3, 67, 401
LmnI GCTCC 2 cut(s) 370, 567
LpnPI CCDG 9 cut(s) 46, 171, 414, 424, 648, 665, 675, 685, 711
LweI GCATC 2 cut(s) 282, 686
MaeI CTAG 2 cut(s) 57, 305
MaeII ACGT 3 cut(s) 386, 691, 717
MaeIII GTNAC 3 cut(s) 94, 300, 451
MalI GATC 3 cut(s) 5, 69, 403
MboI GATC 3 cut(s) 3, 67, 401
MboII GAAGA 1 cut(s) 382
MflI RGATCY 1 cut(s) 401
MluCI AATT 2 cut(s) 349, 355
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 2 cut(s) 487, 538
MslI CAYNNNNRTG 1 cut(s) 562
MspI CCGG 3 cut(s) 158, 411, 698
MspR9I CCNGG 2 cut(s) 412, 663
MvaI CCWGG 1 cut(s) 663
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 4 cut(s) 230, 554, 595, 674
NciI CCSGG 1 cut(s) 412
NdeII GATC 3 cut(s) 3, 67, 401
NheI GCTAGC 1 cut(s) 56
NlaIII CATG 6 cut(s) 192, 259, 313, 589, 613, 636
NlaIV GGNNCC 2 cut(s) 162, 569
NmeAIII GCCGAG 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 300
NruI TCGCGA 1 cut(s) 705
NspI RCATGY 1 cut(s) 636
NspV TTCGAA 1 cut(s) 116
PaeI GCATGC 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PfeI GAWTC 2 cut(s) 432, 462
PflFI GACNNNGTC 1 cut(s) 716
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 1 cut(s) 254
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 661
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 2 cut(s) 162, 569
PspPI GGNCC 2 cut(s) 160, 659
PsuI RGATCY 1 cut(s) 401
PsyI GACNNNGTC 1 cut(s) 716
RruI TCGCGA 1 cut(s) 705
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 562
SalI GTCGAC 1 cut(s) 209
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 3 cut(s) 3, 67, 401
Sau96I GGNCC 2 cut(s) 160, 659
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 412, 663
SetI ASST 9 cut(s) 39, 62, 108, 183, 367, 389, 646, 694, 720
SfaNI GCATC 2 cut(s) 282, 686
SfcI CTRYAG 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 2 cut(s) 160, 659
SmiMI CAYNNNNRTG 1 cut(s) 562
SpeI ACTAGT 1 cut(s) 304
SphI GCATGC 1 cut(s) 636
Sse9I AATT 2 cut(s) 349, 355
SsiI CCGC 5 cut(s) 7, 11, 252, 369, 395
SspMI CTAG 2 cut(s) 57, 305
StyD4I CCNGG 2 cut(s) 410, 661
StyI CCWWGG 2 cut(s) 323, 422
TaaI ACNGT 3 cut(s) 94, 248, 484
TaiI ACGT 3 cut(s) 389, 694, 720
TaqI TCGA 4 cut(s) 73, 116, 210, 543
TasI AATT 2 cut(s) 349, 355
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 2 cut(s) 432, 462
TseFI GTSAC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 300
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 2 cut(s) 80, 322
Tth111I GACNNNGTC 1 cut(s) 716
Van91I CCANNNNNTGG 1 cut(s) 428
VpaK11BI GGWCC 2 cut(s) 160, 659
XceI RCATGY 1 cut(s) 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 2 cut(s) 57, 305
ZraI GACGTC 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.