Rmu_sc0011519.1_g000001

DNA repair protein RAD50

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011519.1
OG0024603
Physical Location & Seq
Forward (+)
1199 .. 1920
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011519.1_g000001.1.cds

Sequence Viewer

Length: 627 bp
atgagtacggtggacaagatgcttataaagggaatccggagcttcgacccggagaacaagcacgtcatcaccttcttcaagcccctaaccctaatcgtcggccacaacggcgccggaaaaaccaccatcatcgagtgcctcaagctctcttgcaccggcgagttgcctcccaatgccaggtccggccacagcttcatccacgaccccaaagtcgccggcgaaaccgagaccaaaggtcagattaagctccgcttcaagacggccgccggcaaggacgtcgtctctatcaggtcgtttcagctcacacagaaagcctccaaaatggaatataaagccatcgagagcgtccttcaaactattaatccccacaccggagagaaagtttgcctgagctatagatgtgctgacatggataaggaaatccctgctttgatgggtgtctcgaaggcgattctcgaaaatgtgatctttgctcaccaagacgaagccaattggcctttgcaggatccttccacactgaagaagaagtttgatgatatcttctctgctacacggtacatatctttcttttgtttttctcaaaaggttttgtatcagtctcgtttgtttggaccttattatctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000280 GO:0000722 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003824 GO:0004017 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010833 GO:0016043 GO:0016233 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0022402 GO:0022414 GO:0030870 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035825 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046940 GO:0048285 GO:0050145 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051880 GO:0055086 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070192 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090305 GO:0090407 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0140013 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903046
KEGG Pathways
Metabolic & Signaling
ko03440 ko03450 ko04218 map03440 map03450 map04218
Pfam Domains
Protein Families
AAA_23 Rad50_zn_hook

Protein Analysis

208

Amino Acids

23.37

Weight (kDa)

9.12

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024603)

Species Orthologous Gene IDs
prunus_persica Prupe.1G180400_v2.0.a1
rosa_multiflora Rmu_sc0011519.1_g000001
rosa_roxburghii Rroxscaffold_1G00040630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AasI GACNNNNNNGTC 1 cut(s) 209
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 110
AccIII TCCGGA 1 cut(s) 36
AciI CCGC 2 cut(s) 250, 264
AclWI GGATC 2 cut(s) 500, 513
AcoI YGGCCR 3 cut(s) 100, 184, 261
AcuI CTGAAG 1 cut(s) 539
AcyI GRCGYC 2 cut(s) 111, 276
AfaI GTAC 2 cut(s) 7, 557
AfiI CCNNNNNNNGG 2 cut(s) 177, 371
AgsI TTSAA 3 cut(s) 79, 256, 353
AhdI GACNNNNNGTC 1 cut(s) 234
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 6 cut(s) 42, 145, 192, 247, 301, 393
AluI AGCT 6 cut(s) 42, 145, 192, 247, 301, 393
Alw26I GTCTC 4 cut(s) 221, 286, 445, 603
AlwI GGATC 2 cut(s) 500, 513
Aor13HI TCCGGA 1 cut(s) 36
AoxI GGCC 4 cut(s) 100, 184, 261, 494
AseI ATTAAT 1 cut(s) 360
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 180, 611
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 61, 467
AvaII GGWCC 2 cut(s) 180, 611
BamHI GGATCC 1 cut(s) 505
BanI GGYRCC 1 cut(s) 110
BccI CCATC 3 cut(s) 134, 344, 427
BceAI ACGGC 2 cut(s) 124, 276
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 4 cut(s) 221, 286, 445, 603
BfmI CTRYAG 1 cut(s) 394
BfoI RGCGCY 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 50, 178
Bme18I GGWCC 2 cut(s) 180, 611
BmeRI GACNNNNNGTC 1 cut(s) 234
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 180, 611
BmiI GGNNCC 2 cut(s) 112, 507
BmrFI CCNGG 2 cut(s) 50, 178
BmsI GCATC 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 50
BsaHI GRCGYC 2 cut(s) 111, 276
BsaI GGTCTC 1 cut(s) 221
BsaWI WCCGGW 2 cut(s) 36, 371
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 371
Bse118I RCCGGY 3 cut(s) 155, 215, 266
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 177, 371
BseMII CTCAG 1 cut(s) 380
BseX3I CGGCCG 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 4 cut(s) 102, 186, 263, 496
BshNI GGYRCC 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 264
BsiSI CCGG 8 cut(s) 37, 50, 114, 156, 183, 216, 267, 372
BslI CCNNNNNNNGG 2 cut(s) 177, 371
BsmAI GTCTC 4 cut(s) 221, 286, 445, 603
BsmBI CGTCTC 1 cut(s) 286
BsnI GGCC 4 cut(s) 102, 186, 263, 496
Bso31I GGTCTC 1 cut(s) 221
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 2 cut(s) 465, 505
BspACI CCGC 2 cut(s) 250, 264
BspANI GGCC 4 cut(s) 102, 186, 263, 496
BspCNI CTCAG 1 cut(s) 381
BspEI TCCGGA 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 112, 507
BspPI GGATC 2 cut(s) 500, 513
BspT107I GGYRCC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 221
BsrFI RCCGGY 3 cut(s) 155, 215, 266
BssAI RCCGGY 3 cut(s) 155, 215, 266
BssMI GATC 2 cut(s) 465, 505
BssNI GRCGYC 2 cut(s) 111, 276
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 10, 555
BstACI GRCGYC 2 cut(s) 111, 276
BstC8I GCNNGC 2 cut(s) 217, 268
BstDEI CTNAG 1 cut(s) 389
BstF5I GGATG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 2 cut(s) 468, 508
BstMAI GTCTC 4 cut(s) 221, 286, 445, 603
BstMBI GATC 2 cut(s) 465, 505
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 48, 176
BstSFI CTRYAG 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BstZI CGGCCG 1 cut(s) 261
BsuRI GGCC 4 cut(s) 102, 186, 263, 496
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 2 cut(s) 217, 268
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 3 cut(s) 155, 215, 266
Cfr13I GGNCC 2 cut(s) 180, 611
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 6, 556
CviAII CATG 1 cut(s) 409
CviQI GTAC 2 cut(s) 6, 556
DdeI CTNAG 1 cut(s) 389
DinI GGCGCC 1 cut(s) 112
DpnI GATC 2 cut(s) 467, 507
DpnII GATC 2 cut(s) 465, 505
DrdI GACNNNNNNGTC 1 cut(s) 209
DriI GACNNNNNGTC 1 cut(s) 234
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 3 cut(s) 100, 184, 261
EagI CGGCCG 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 234
EclXI CGGCCG 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 221
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 180, 611
Eco52I CGGCCG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 176
EcoRV GATATC 1 cut(s) 538
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 1 cut(s) 412
FaiI YATR 5 cut(s) 26, 330, 396, 410, 560
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 264
GlaI GCGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 4 cut(s) 102, 186, 263, 496
HapII CCGG 8 cut(s) 37, 50, 114, 156, 183, 216, 267, 372
HgaI GACGC 1 cut(s) 334
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 2 cut(s) 111, 276
Hin1II CATG 1 cut(s) 412
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 2 cut(s) 33, 451
HpaII CCGG 8 cut(s) 37, 50, 114, 156, 183, 216, 267, 372
HphI GGTGA 2 cut(s) 61, 467
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 5 cut(s) 37, 256, 340, 442, 455
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 101, 281
HpyAV CCTTC 4 cut(s) 82, 359, 439, 519
HpyCH4III ACNGT 2 cut(s) 10, 555
HpyCH4IV ACGT 2 cut(s) 63, 276
HpyCH4V TGCA 2 cut(s) 153, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 2 cut(s) 63, 276
Hsp92I GRCGYC 2 cut(s) 111, 276
Hsp92II CATG 1 cut(s) 412
HspAI GCGC 1 cut(s) 111
KasI GGCGCC 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 36
KroI GCCGGC 2 cut(s) 215, 266
KroNI GCCGGC 2 cut(s) 217, 268
Kzo9I GATC 2 cut(s) 465, 505
LmnI GCTCC 2 cut(s) 39, 252
LweI GCATC 1 cut(s) 9
MaeII ACGT 2 cut(s) 63, 276
MalI GATC 2 cut(s) 467, 507
MboI GATC 2 cut(s) 465, 505
MboII GAAGA 4 cut(s) 67, 532, 532, 535
MfeI CAATTG 1 cut(s) 490
MflI RGATCY 1 cut(s) 505
MluCI AATT 1 cut(s) 490
Mly113I GGCGCC 1 cut(s) 111
MnlI CCTC 3 cut(s) 149, 177, 325
MreI CGCCGGCG 1 cut(s) 215
MroI TCCGGA 1 cut(s) 36
MroNI GCCGGC 2 cut(s) 215, 266
MseI TTAA 2 cut(s) 243, 360
MspI CCGG 8 cut(s) 37, 50, 114, 156, 183, 216, 267, 372
MspR9I CCNGG 2 cut(s) 50, 178
MunI CAATTG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 108
NaeI GCCGGC 2 cut(s) 217, 268
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 1 cut(s) 50
NdeII GATC 2 cut(s) 465, 505
NgoMIV GCCGGC 2 cut(s) 215, 266
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 2 cut(s) 112, 507
PdiI GCCGGC 2 cut(s) 217, 268
PfeI GAWTC 2 cut(s) 33, 451
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 265
PluTI GGCGCC 1 cut(s) 114
PshBI ATTAAT 1 cut(s) 360
PsiI TTATAA 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 112, 507
PspPI GGNCC 2 cut(s) 180, 611
PsuI RGATCY 1 cut(s) 505
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 2 cut(s) 7, 557
RsaNI GTAC 2 cut(s) 6, 556
SaqAI TTAA 2 cut(s) 243, 360
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 465, 505
Sau96I GGNCC 2 cut(s) 180, 611
ScrFI CCNGG 2 cut(s) 50, 178
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 1 cut(s) 394
SfoI GGCGCC 1 cut(s) 112
SgrAI CRCCGGYG 2 cut(s) 155, 215
SinI GGWCC 2 cut(s) 180, 611
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 490
SsiI CCGC 2 cut(s) 250, 264
SspDI GGCGCC 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 48, 176
TaaI ACNGT 2 cut(s) 10, 555
TaiI ACGT 2 cut(s) 66, 279
TaqI TCGA 5 cut(s) 45, 132, 339, 443, 456
TasI AATT 1 cut(s) 490
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 2 cut(s) 33, 451
Tru1I TTAA 2 cut(s) 243, 360
Tru9I TTAA 2 cut(s) 243, 360
TscAI CASTG 1 cut(s) 522
TspDTI ATGAA 1 cut(s) 184
TspRI CASTG 1 cut(s) 522
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 180, 611
VspI ATTAAT 1 cut(s) 360
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.