Rmu_sc0011745.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011745.1
OG0025593
Physical Location & Seq
Forward (+)
771 .. 1721
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011745.1_g000001.1.cds

Sequence Viewer

Length: 783 bp
atgctcaaatcttcccttgtgtttatttgtgagactaagattcaggataagcaagttttcgagggactgcataaggcgctagggtttccccattctcgattcattgatatggaggtgggcagtggaggtattgatgatccaaagtggagattcacggctttccactgttacccaagtaaacgggataggttccggtcctggaaaattttgagggacttgagtgaccaggattctctggcatgggtagtcattggggatgccaatgagatcctgcatgctggggagaagttggggggtcgtgtacgctatgaggctcagctacagggatttagagatgtggtggattactgtgaactggttgatcttggttttacaggaagcccttatatgtggagcaacctggagacaaagattagtctggatcgagctttaggaacgcagtcatggttggatctgtttgggcattcgaaggtggtaaacctcccaccgagccactcggaccatgtaccgaacccgaggtgtgatgaggtgcttcatgatcgatggaggaccaattttactggtcgacctatgtttcaagtggtgaagaagctgcaacatactagcaaagctttggatgtttggcaaaggagtacgttttcagatcgtaaacttcagatgcagtctgttcgtgaaaggttggaggctattttagggcttcctgcatccgaggagttgaatgaggagagtagaatgttacaccttcagttggagcaccttctctcacaggatgaggcctactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

260

Amino Acids

30.07

Weight (kDa)

6.26

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025593)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8063360.1_g000001 Rmu_sc0005212.1_g000003 Rmu_sc0011745.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 565
AclWI GGATC 4 cut(s) 131, 262, 429, 459
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 2 cut(s) 638, 728
AfaI GTAC 3 cut(s) 303, 507, 634
AfiI CCNNNNNNNGG 1 cut(s) 748
AgsI TTSAA 2 cut(s) 578, 718
AjnI CCWGG 3 cut(s) 197, 225, 399
AluBI AGCT 4 cut(s) 319, 428, 592, 611
AluI AGCT 4 cut(s) 319, 428, 592, 611
Alw21I GWGCWC 1 cut(s) 756
Alw26I GTCTC 2 cut(s) 26, 398
AlwI GGATC 4 cut(s) 131, 262, 429, 459
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 1 cut(s) 592
ApoI RAATTY 1 cut(s) 204
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 3 cut(s) 195, 499, 549
AsuHPI GGTGA 1 cut(s) 595
AsuII TTCGAA 1 cut(s) 467
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 3 cut(s) 195, 499, 549
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 1 cut(s) 579
BccI CCATC 1 cut(s) 537
BceAI ACGGC 1 cut(s) 171
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 3 cut(s) 199, 227, 401
BcoDI GTCTC 2 cut(s) 26, 398
BfaI CTAG 3 cut(s) 80, 603, 781
BfmI CTRYAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 1 cut(s) 593
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 594
Bme1390I CCNGG 3 cut(s) 199, 227, 401
Bme18I GGWCC 3 cut(s) 195, 499, 549
BmeT110I CYCGRG 1 cut(s) 514
BmgT120I GGNCC 3 cut(s) 195, 499, 549
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 3 cut(s) 199, 227, 401
BmsI GCATC 3 cut(s) 247, 648, 713
BpmI CTGGAG 1 cut(s) 422
Bpu1102I GCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 515, 708
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 748
Bse1I ACTGG 2 cut(s) 360, 565
BseBI CCWGG 3 cut(s) 199, 227, 401
BseCI ATCGAT 1 cut(s) 541
BseDI CCNNGG 2 cut(s) 515, 708
BseGI GGATG 4 cut(s) 262, 622, 704, 775
BseLI CCNNNNNNNGG 1 cut(s) 748
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 360, 565
BseRI GAGGAG 2 cut(s) 725, 737
BseXI GCAGC 1 cut(s) 579
BseYI CCCAGC 1 cut(s) 278
BshFI GGCC 1 cut(s) 776
BshVI ATCGAT 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 756
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 2 cut(s) 78, 227
BslI CCNNNNNNNGG 1 cut(s) 748
BsmAI GTCTC 2 cut(s) 26, 398
BsmFI GGGAC 2 cut(s) 78, 227
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 776
BsoBI CYCGRG 1 cut(s) 514
Bsp119I TTCGAA 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 756
Bsp143I GATC 7 cut(s) 136, 267, 361, 421, 451, 538, 643
Bsp1720I GCTNAGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 776
BspCNI CTCAG 1 cut(s) 328
BspDI ATCGAT 1 cut(s) 541
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 191
BspPI GGATC 4 cut(s) 131, 262, 429, 459
BspT104I TTCGAA 1 cut(s) 467
BsrI ACTGG 2 cut(s) 360, 565
BssECI CCNNGG 2 cut(s) 515, 708
BssMI GATC 7 cut(s) 136, 267, 361, 421, 451, 538, 643
Bst2UI CCWGG 3 cut(s) 199, 227, 401
Bst4CI ACNGT 2 cut(s) 167, 350
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 36, 315
BstF5I GGATG 4 cut(s) 262, 622, 704, 775
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 7 cut(s) 139, 270, 364, 424, 454, 541, 646
BstMAI GTCTC 2 cut(s) 26, 398
BstMBI GATC 7 cut(s) 136, 267, 361, 421, 451, 538, 643
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 3 cut(s) 199, 227, 401
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 197, 225, 399
BstSFI CTRYAG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 579
BstX2I RGATCY 2 cut(s) 267, 451
BstYI RGATCY 2 cut(s) 267, 451
Bsu15I ATCGAT 1 cut(s) 541
BsuRI GGCC 1 cut(s) 776
BsuTUI ATCGAT 1 cut(s) 541
BtsCI GGATG 4 cut(s) 262, 622, 704, 775
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 127, 163
Cac8I GCNNGC 1 cut(s) 276
CciI TCATGA 1 cut(s) 535
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 195, 499, 549
ClaI ATCGAT 1 cut(s) 541
Csp6I GTAC 3 cut(s) 302, 506, 633
CviAII CATG 5 cut(s) 240, 275, 444, 503, 536
CviQI GTAC 3 cut(s) 302, 506, 633
DdeI CTNAG 2 cut(s) 36, 315
DpnI GATC 7 cut(s) 138, 269, 363, 423, 453, 540, 645
DpnII GATC 7 cut(s) 136, 267, 361, 421, 451, 538, 643
Eco147I AGGCCT 1 cut(s) 776
Eco47I GGWCC 3 cut(s) 195, 499, 549
Eco57I CTGAAG 2 cut(s) 638, 728
Eco88I CYCGRG 1 cut(s) 514
EcoRII CCWGG 3 cut(s) 197, 225, 399
FaeI CATG 5 cut(s) 243, 278, 447, 506, 539
FaqI GGGAC 2 cut(s) 78, 227
FatI CATG 5 cut(s) 239, 274, 443, 502, 535
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 1 cut(s) 593
FokI GGATG 3 cut(s) 269, 629, 691
Fsp4HI GCNGC 1 cut(s) 593
FspBI CTAG 3 cut(s) 80, 603, 781
GlaI GCGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 593
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 422
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 1 cut(s) 776
HapII CCGG 1 cut(s) 193
HhaI GCGC 1 cut(s) 79
Hin1II CATG 5 cut(s) 243, 278, 447, 506, 539
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 566
HindII GTYRAC 1 cut(s) 566
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 4 cut(s) 40, 99, 150, 230
HpaII CCGG 1 cut(s) 193
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 6 cut(s) 179, 302, 353, 478, 566, 650
Hpy188I TCNGA 4 cut(s) 499, 643, 657, 709
Hpy188III TCNNGA 5 cut(s) 44, 96, 419, 536, 671
Hpy8I GTNNAC 6 cut(s) 179, 302, 353, 478, 566, 650
HpyAV CCTTC 3 cut(s) 463, 752, 767
HpyCH4III ACNGT 2 cut(s) 167, 350
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 5 cut(s) 70, 274, 595, 661, 704
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 36, 315
HpySE526I ACGT 1 cut(s) 635
Hsp92II CATG 5 cut(s) 243, 278, 447, 506, 539
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 7 cut(s) 136, 267, 361, 421, 451, 538, 643
LmnI GCTCC 2 cut(s) 393, 751
Lsp1109I GCAGC 1 cut(s) 579
LweI GCATC 3 cut(s) 247, 648, 713
MaeI CTAG 3 cut(s) 80, 603, 781
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 3 cut(s) 167, 221, 735
MalI GATC 7 cut(s) 138, 269, 363, 423, 453, 540, 645
MboI GATC 7 cut(s) 136, 267, 361, 421, 451, 538, 643
MboII GAAGA 2 cut(s) 3, 598
MflI RGATCY 2 cut(s) 267, 451
MhlI GDGCHC 1 cut(s) 756
MluCI AATT 2 cut(s) 204, 553
MmeI TCCRAC 3 cut(s) 429, 660, 729
MslI CAYNNNNRTG 1 cut(s) 107
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 3 cut(s) 199, 227, 401
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 3 cut(s) 199, 227, 401
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 7 cut(s) 136, 267, 361, 421, 451, 538, 643
NlaIII CATG 5 cut(s) 243, 278, 447, 506, 539
NlaIV GGNNCC 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 278
NspV TTCGAA 1 cut(s) 467
PaeI GCATGC 1 cut(s) 278
PagI TCATGA 1 cut(s) 535
PceI AGGCCT 1 cut(s) 776
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 4 cut(s) 40, 99, 150, 230
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 1 cut(s) 594
Psp6I CCWGG 3 cut(s) 197, 225, 399
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 3 cut(s) 197, 225, 399
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 3 cut(s) 195, 499, 549
PsuI RGATCY 2 cut(s) 267, 451
RsaI GTAC 3 cut(s) 303, 507, 634
RsaNI GTAC 3 cut(s) 302, 506, 633
RseI CAYNNNNRTG 1 cut(s) 107
SalI GTCGAC 1 cut(s) 564
SatI GCNGC 1 cut(s) 593
Sau3AI GATC 7 cut(s) 136, 267, 361, 421, 451, 538, 643
Sau96I GGNCC 3 cut(s) 195, 499, 549
ScrFI CCNGG 3 cut(s) 199, 227, 401
SduI GDGCHC 1 cut(s) 756
SfaNI GCATC 3 cut(s) 247, 648, 713
SfcI CTRYAG 1 cut(s) 320
SfuI TTCGAA 1 cut(s) 467
SinI GGWCC 3 cut(s) 195, 499, 549
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SphI GCATGC 1 cut(s) 278
Sse9I AATT 2 cut(s) 204, 553
SseBI AGGCCT 1 cut(s) 776
SspMI CTAG 3 cut(s) 80, 603, 781
StuI AGGCCT 1 cut(s) 776
StyD4I CCNGG 3 cut(s) 197, 225, 399
TaaI ACNGT 2 cut(s) 167, 350
TaiI ACGT 1 cut(s) 638
TaqI TCGA 6 cut(s) 60, 97, 424, 467, 541, 565
TasI AATT 2 cut(s) 204, 553
TfiI GAWTC 4 cut(s) 40, 99, 150, 230
TscAI CASTG 2 cut(s) 127, 170
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 1 cut(s) 592
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 91, 524
TspRI CASTG 2 cut(s) 127, 170
VpaK11BI GGWCC 3 cut(s) 195, 499, 549
XapI RAATTY 1 cut(s) 204
XceI RCATGY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 565
XspI CTAG 3 cut(s) 80, 603, 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.