Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011910.1

Orthogroup ID

OG0025468

Physical Location & Seq

Genomic Coordinates Forward (+)

33506 .. 33760

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011910.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgatggatttcgaagatgaacaatacctgaagcaaagactagatgaattgccgagagacgtctccaagaagcaaaagtttgagcccgccgtcgccgccaacatctctctcctctatgaccgctactcctctgcctcccctcctcttcgcaagtccaactacacgctcatctgccgcatcaccaccgtcttgaagacccgctacacttccctcgggttcagggccgctaggttggccctcttgcgccttgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

84

Amino Acids

9.76

Weight (kDa)

9.77

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025468)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000028.1_g000012 Rmu_sc0011910.1_g000007
rosa_samantha	Rh1CG072900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AciI	CCGC	6 cut(s)	87, 96, 121, 175, 199, 225
AcuI	CTGAAG	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	51, 67
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	222, 234
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	222, 235
AsuHPI	GGTGA	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BbsI	GAAGAC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	51, 67
BfaI	CTAG	2 cut(s)	41, 228
BisI	GCNGC	3 cut(s)	96, 175, 225
BlsI	GCNGC	3 cut(s)	97, 176, 226
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	222, 235
BmsI	GCATC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	200
Bpu14I	TTCGAA	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
BseDI	CCNNGG	1 cut(s)	211
BseRI	GAGGAG	3 cut(s)	101, 118, 132
BshFI	GGCC	2 cut(s)	224, 236
BsiHKCI	CYCGRG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	51, 67
BsmBI	CGTCTC	2 cut(s)	51, 67
BsnI	GGCC	2 cut(s)	224, 236
BsoBI	CYCGRG	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	87
BspACI	CCGC	6 cut(s)	87, 96, 121, 175, 199, 225
BspANI	GGCC	2 cut(s)	224, 236
BspT104I	TTCGAA	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	246
BstMAI	GTCTC	2 cut(s)	51, 67
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 233
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	224, 236
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	222, 235
CviJI	RGCY	3 cut(s)	85, 224, 236
CviKI_1	RGCY	3 cut(s)	85, 224, 236
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	2 cut(s)	51, 67
FaiI	YATR	1 cut(s)	117
FauI	CCCGC	2 cut(s)	94, 206
Fnu4HI	GCNGC	3 cut(s)	96, 175, 225
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	96, 175, 225
FspBI	CTAG	2 cut(s)	41, 228
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	3 cut(s)	96, 175, 225
HaeIII	GGCC	2 cut(s)	224, 236
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HphI	GGTGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 233
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	1 cut(s)	244
LpnPI	CCDG	2 cut(s)	41, 205
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	2 cut(s)	41, 228
MaeII	ACGT	1 cut(s)	60
MboII	GAAGA	3 cut(s)	26, 137, 205
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	122, 139, 145, 150, 153, 221, 248
MwoI	GCNNNNNNNGC	2 cut(s)	95, 233
NmeAIII	GCCGAG	1 cut(s)	78
NspV	TTCGAA	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	97, 176, 226
PspPI	GGNCC	2 cut(s)	222, 235
SatI	GCNGC	3 cut(s)	96, 175, 225
Sau96I	GGNCC	2 cut(s)	222, 235
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	3 cut(s)	30, 63, 233
SfaNI	GCATC	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	12
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	6 cut(s)	87, 96, 121, 175, 199, 225
SspMI	CTAG	2 cut(s)	41, 228
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	12
TasI	AATT	1 cut(s)	47
TauI	GCSGC	3 cut(s)	98, 177, 227
TspDTI	ATGAA	2 cut(s)	33, 60
XspI	CTAG	2 cut(s)	41, 228
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.