Rmu_sc0012115.1_g000009

TBCC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012115.1
OG0031020
Physical Location & Seq
Reverse (-)
29573 .. 32870
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012115.1_g000009.1.cds

Sequence Viewer

Length: 657 bp
ctgagatatgccacagtgtatggatgctctgatgctacaattgtccttggagctgttggaaaggccgtaagaattgaacactgtgagcgagttcatgtgatcacagcagcaaatcgaatctgcattgctaactgccgcgaatgcatgttttttctcggggtaaaccaacgaccacttattgttggggataaccataagctgcaggtggcaccatacaatacattttacagtcagttggaggagcacttgagtgaagttggcattgatgctactatcaatagatggaatgaacccctgcctctcggagcggttgatccacatgattcactatctcatccagcaggtgtctctgatgctcaggctgagtctgctactcgcgtagaccctgaccagttcacaacctttttgattccaaactggtgtggaggtgaaccacatggctccacaaaggtcaacccatttccattaccagaagcttatgtggaatctcaagacagaaatcagaagaatttaggggaggtgaagcaattattgagagaagcaccccttgaggacaatagaaaacgggaattatcaactgctcttcacgtatattttaaagactggttgtatgcttctggaaacatacgacagctttactgcctacaaggagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCC

Protein Analysis

218

Amino Acids

24.39

Weight (kDa)

5.62

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031020)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0012115.1_g000009 Rmu_ssc0000353.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 193, 332
Acc36I ACCTGC 2 cut(s) 193, 332
AccB1I GGYRCC 1 cut(s) 208
AccBSI CCGCTC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 381
AccII CGCG 2 cut(s) 138, 378
AciI CCGC 2 cut(s) 136, 308
AclWI GGATC 1 cut(s) 308
AcsI RAATTY 1 cut(s) 508
AgsI TTSAA 1 cut(s) 77
AleI CACNNNNGTG 1 cut(s) 249
AluBI AGCT 4 cut(s) 53, 199, 476, 634
AluI AGCT 4 cut(s) 53, 199, 476, 634
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 107, 199
ApoI RAATTY 1 cut(s) 508
AsuHPI GGTGA 2 cut(s) 440, 532
AvaI CYCGRG 1 cut(s) 155
BanI GGYRCC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 119, 186
BccI CCATC 1 cut(s) 276
BceAI ACGGC 1 cut(s) 50
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 352
BfmI CTRYAG 1 cut(s) 200
BfuAI ACCTGC 2 cut(s) 193, 332
BisI GCNGC 3 cut(s) 108, 136, 200
BlsI GCNGC 3 cut(s) 109, 137, 201
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 210, 442
BmsI GCATC 4 cut(s) 14, 22, 256, 343
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 3 cut(s) 268, 474, 569
BsaAI YACGTR 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 46
Bse1I ACTGG 3 cut(s) 391, 422, 608
Bse3DI GCAATG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 2 cut(s) 29, 334
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 354, 371
BseNI ACTGG 3 cut(s) 391, 422, 608
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 119, 186
Bsh1236I CGCG 2 cut(s) 138, 378
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 352
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 99, 313
BspACI CCGC 2 cut(s) 136, 308
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 355, 370
BspFNI CGCG 2 cut(s) 138, 378
BspLI GGNNCC 2 cut(s) 210, 442
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 2 cut(s) 193, 332
BspPI GGATC 1 cut(s) 308
BspQI GCTCTTC 1 cut(s) 588
BspT107I GGYRCC 1 cut(s) 208
BsrBI CCGCTC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 3 cut(s) 391, 422, 608
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 2 cut(s) 99, 313
BssT1I CCWWGG 1 cut(s) 46
Bst4CI ACNGT 3 cut(s) 16, 83, 230
Bst6I CTCTTC 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 589
BstDEI CTNAG 3 cut(s) 2, 357, 363
BstF5I GGATG 2 cut(s) 29, 334
BstFNI CGCG 2 cut(s) 138, 378
BstKTI GATC 2 cut(s) 102, 316
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 2 cut(s) 99, 313
BstMWI GCNNNNNNNGC 2 cut(s) 141, 368
BstNSI RCATGY 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 200
BstUI CGCG 2 cut(s) 138, 378
BstV1I GCAGC 2 cut(s) 119, 186
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 29, 334
BtsIMutI CAGTG 2 cut(s) 21, 79
BveI ACCTGC 2 cut(s) 193, 332
CviAII CATG 4 cut(s) 95, 145, 320, 437
CviJI RGCY 7 cut(s) 53, 65, 199, 362, 441, 476, 634
CviKI_1 RGCY 7 cut(s) 53, 65, 199, 362, 441, 476, 634
DdeI CTNAG 3 cut(s) 2, 357, 363
DpnI GATC 2 cut(s) 101, 315
DpnII GATC 2 cut(s) 99, 313
DraI TTTAAA 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 4 cut(s) 98, 148, 323, 440
FalI AAGNNNNNCTT 2 cut(s) 531, 563
FatI CATG 4 cut(s) 94, 144, 319, 436
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 381
Fnu4HI GCNGC 3 cut(s) 108, 136, 200
FokI GGATG 2 cut(s) 36, 321
Fsp4HI GCNGC 3 cut(s) 108, 136, 200
GluI GCNGC 3 cut(s) 108, 136, 200
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 4 cut(s) 98, 148, 323, 440
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 5 cut(s) 117, 323, 365, 409, 485
HphI GGTGA 2 cut(s) 440, 532
Hpy166II GTNNAC 5 cut(s) 163, 382, 396, 431, 454
Hpy188I TCNGA 4 cut(s) 31, 305, 352, 504
Hpy188III TCNNGA 2 cut(s) 491, 618
Hpy8I GTNNAC 5 cut(s) 163, 382, 396, 431, 454
HpyCH4III ACNGT 3 cut(s) 16, 83, 230
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 3 cut(s) 123, 144, 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 368
HpyF3I CTNAG 3 cut(s) 2, 357, 363
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 4 cut(s) 98, 148, 323, 440
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 2 cut(s) 99, 313
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 4 cut(s) 50, 241, 305, 446
Lsp1109I GCAGC 2 cut(s) 119, 186
LweI GCATC 4 cut(s) 14, 22, 256, 343
MaeII ACGT 1 cut(s) 588
MalI GATC 2 cut(s) 101, 315
MbiI CCGCTC 1 cut(s) 308
MboI GATC 2 cut(s) 99, 313
MboII GAAGA 2 cut(s) 517, 575
MfeI CAATTG 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 5 cut(s) 39, 72, 508, 527, 569
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 37, 216
MnlI CCTC 5 cut(s) 232, 309, 419, 511, 544
Mph1103I ATGCAT 1 cut(s) 146
MseI TTAA 1 cut(s) 597
MslI CAYNNNNRTG 1 cut(s) 249
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 146
MvnI CGCG 2 cut(s) 138, 378
MwoI GCNNNNNNNGC 2 cut(s) 141, 368
NdeII GATC 2 cut(s) 99, 313
NlaIII CATG 4 cut(s) 98, 148, 323, 440
NlaIV GGNNCC 2 cut(s) 210, 442
NsiI ATGCAT 1 cut(s) 146
NspI RCATGY 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 249
PaqCI CACCTGC 2 cut(s) 193, 332
PciSI GCTCTTC 1 cut(s) 588
PctI GAATGC 1 cut(s) 146
PfeI GAWTC 4 cut(s) 117, 323, 409, 485
PkrI GCNGC 3 cut(s) 109, 137, 201
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Ppu21I YACGTR 1 cut(s) 589
PspN4I GGNNCC 2 cut(s) 210, 442
PstI CTGCAG 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 3 cut(s) 108, 136, 200
Sau3AI GATC 2 cut(s) 99, 313
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 4 cut(s) 14, 22, 256, 343
SfcI CTRYAG 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 3 cut(s) 247, 489, 548
SmoI CTYRAG 3 cut(s) 247, 489, 548
Sse9I AATT 5 cut(s) 39, 72, 508, 527, 569
SsiI CCGC 2 cut(s) 136, 308
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 3 cut(s) 16, 83, 230
TaiI ACGT 1 cut(s) 591
TaqI TCGA 1 cut(s) 115
TasI AATT 5 cut(s) 39, 72, 508, 527, 569
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 4 cut(s) 117, 323, 409, 485
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 2 cut(s) 21, 86
TseI GCWGC 2 cut(s) 107, 199
TspDTI ATGAA 2 cut(s) 83, 303
TspRI CASTG 2 cut(s) 21, 86
XapI RAATTY 1 cut(s) 508
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.