Rmu_ssc0000353.1_g000002

TBCC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000353.1
OG0031020
Physical Location & Seq
Reverse (-)
2635 .. 5086
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000353.1_g000002.1.cds

Sequence Viewer

Length: 717 bp
atgcagcgtatatctatcgcaaaatgcttccactctccctccttctctttgaacattttctttttctgttggatcattctagaagatgatcttagttctgtaagcccttatctaatgaacctggccgtaagaattgaacactgtgagcgagttcatgtgatcacagcagcaaatcgaatctgcattgctaactgccgcgaatgcatgttttttctcggggtaaaccaacgaccacttattgttggggataaccataagctgcaggtggcaccatacaatacattttacagtcagttggaggagcacttgagtgaagttggcattgatgctactatcaatagatggaatgaacccctgcctctcggagcggttgatccacatgattcactatctcatccagcaggtgtctctgatgctcaggctgagtctgctactcgcgtagaccctgaccagttcacaacctttttgattccaaactggtgtggaggtgaaccacatggctccacaaaggtcaacccatttccattaccagaagcttatgtggaatctcaagacagaaatcagaagaatttaggggaggtgaagcaattattgagagaagcaccccttgaggacaatagaaaacgggaattatcaactgctcttcacgtatattttaaagactggttgtatgcttctggaaacatacgacagctttactgcctacaaggagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCC

Protein Analysis

238

Amino Acids

27.05

Weight (kDa)

5.46

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031020)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0012115.1_g000009 Rmu_ssc0000353.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 253, 392
Acc36I ACCTGC 2 cut(s) 253, 392
AccB1I GGYRCC 1 cut(s) 268
AccBSI CCGCTC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 441
AccII CGCG 2 cut(s) 198, 438
AciI CCGC 2 cut(s) 196, 368
AclWI GGATC 2 cut(s) 80, 368
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 568
AgsI TTSAA 2 cut(s) 52, 137
AjnI CCWGG 1 cut(s) 120
AleI CACNNNNGTG 1 cut(s) 309
AluBI AGCT 3 cut(s) 259, 536, 694
AluI AGCT 3 cut(s) 259, 536, 694
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 2 cut(s) 80, 368
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 3 cut(s) 4, 167, 259
ApoI RAATTY 1 cut(s) 568
Asp700I GAANNNNTTC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 500, 592
AvaI CYCGRG 1 cut(s) 215
BanI GGYRCC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 3 cut(s) 16, 179, 246
BccI CCATC 1 cut(s) 336
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 122
BclI TGATCA 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 260
BfuAI ACCTGC 2 cut(s) 253, 392
BisI GCNGC 4 cut(s) 5, 168, 196, 260
BlsI GCNGC 4 cut(s) 6, 169, 197, 261
Bme1390I CCNGG 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 270, 502
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 2 cut(s) 316, 403
Bpu10I CCTNAGC 1 cut(s) 417
BpuEI CTTGAG 3 cut(s) 328, 534, 629
BsaAI YACGTR 1 cut(s) 649
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bse1I ACTGG 3 cut(s) 451, 482, 668
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 414, 431
BseNI ACTGG 3 cut(s) 451, 482, 668
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 16, 179, 246
Bsh1236I CGCG 2 cut(s) 198, 438
BshFI GGCC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 412
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 4 cut(s) 72, 88, 159, 373
BspACI CCGC 2 cut(s) 196, 368
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 415, 430
BspFNI CGCG 2 cut(s) 198, 438
BspLI GGNNCC 2 cut(s) 270, 502
BspMAI CTGCAG 1 cut(s) 264
BspMI ACCTGC 2 cut(s) 253, 392
BspPI GGATC 2 cut(s) 80, 368
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 268
BsrBI CCGCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 3 cut(s) 451, 482, 668
BssMI GATC 4 cut(s) 72, 88, 159, 373
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 143, 290
Bst6I CTCTTC 1 cut(s) 648
BstBAI YACGTR 1 cut(s) 649
BstDEI CTNAG 3 cut(s) 92, 417, 423
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 2 cut(s) 198, 438
BstKTI GATC 4 cut(s) 75, 91, 162, 376
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 4 cut(s) 72, 88, 159, 373
BstMWI GCNNNNNNNGC 2 cut(s) 201, 428
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 260
BstUI CGCG 2 cut(s) 198, 438
BstV1I GCAGC 3 cut(s) 16, 179, 246
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 139
BveI ACCTGC 2 cut(s) 253, 392
CviAII CATG 4 cut(s) 155, 205, 380, 497
CviJI RGCY 7 cut(s) 105, 125, 259, 422, 501, 536, 694
CviKI_1 RGCY 7 cut(s) 105, 125, 259, 422, 501, 536, 694
DdeI CTNAG 3 cut(s) 92, 417, 423
DpnI GATC 4 cut(s) 74, 90, 161, 375
DpnII GATC 4 cut(s) 72, 88, 159, 373
DraI TTTAAA 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco88I CYCGRG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 206
FaeI CATG 4 cut(s) 158, 208, 383, 500
FalI AAGNNNNNCTT 4 cut(s) 75, 107, 591, 623
FatI CATG 4 cut(s) 154, 204, 379, 496
FbaI TGATCA 1 cut(s) 159
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 5, 168, 196, 260
FokI GGATG 1 cut(s) 381
Fsp4HI GCNGC 4 cut(s) 5, 168, 196, 260
FspBI CTAG 1 cut(s) 80
GluI GCNGC 4 cut(s) 5, 168, 196, 260
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 4 cut(s) 158, 208, 383, 500
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 5 cut(s) 177, 383, 425, 469, 545
HphI GGTGA 2 cut(s) 500, 592
Hpy166II GTNNAC 5 cut(s) 223, 442, 456, 491, 514
Hpy188I TCNGA 3 cut(s) 365, 412, 564
Hpy188III TCNNGA 3 cut(s) 80, 551, 678
Hpy8I GTNNAC 5 cut(s) 223, 442, 456, 491, 514
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 2 cut(s) 143, 290
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 4 cut(s) 4, 183, 204, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 428
HpyF3I CTNAG 3 cut(s) 92, 417, 423
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 4 cut(s) 158, 208, 383, 500
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 4 cut(s) 72, 88, 159, 373
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 3 cut(s) 301, 365, 506
Lsp1109I GCAGC 3 cut(s) 16, 179, 246
LweI GCATC 2 cut(s) 316, 403
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 648
MalI GATC 4 cut(s) 74, 90, 161, 375
MbiI CCGCTC 1 cut(s) 368
MboI GATC 4 cut(s) 72, 88, 159, 373
MboII GAAGA 3 cut(s) 95, 577, 635
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 4 cut(s) 132, 568, 587, 629
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 2 cut(s) 50, 276
MnlI CCTC 6 cut(s) 49, 292, 369, 479, 571, 604
Mph1103I ATGCAT 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 1 cut(s) 657
MslI CAYNNNNRTG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 198, 438
MwoI GCNNNNNNNGC 2 cut(s) 201, 428
NdeII GATC 4 cut(s) 72, 88, 159, 373
NlaIII CATG 4 cut(s) 158, 208, 383, 500
NlaIV GGNNCC 2 cut(s) 270, 502
NsiI ATGCAT 1 cut(s) 206
NspI RCATGY 1 cut(s) 208
OliI CACNNNNGTG 1 cut(s) 309
PaqCI CACCTGC 2 cut(s) 253, 392
PciSI GCTCTTC 1 cut(s) 648
PctI GAATGC 1 cut(s) 206
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 4 cut(s) 177, 383, 469, 545
PkrI GCNGC 4 cut(s) 6, 169, 197, 261
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Ppu21I YACGTR 1 cut(s) 649
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 270, 502
PstI CTGCAG 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 4 cut(s) 5, 168, 196, 260
Sau3AI GATC 4 cut(s) 72, 88, 159, 373
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 2 cut(s) 316, 403
SfcI CTRYAG 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 3 cut(s) 307, 549, 608
SmoI CTYRAG 3 cut(s) 307, 549, 608
Sse9I AATT 4 cut(s) 132, 568, 587, 629
SsiI CCGC 2 cut(s) 196, 368
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 143, 290
TaiI ACGT 1 cut(s) 651
TaqI TCGA 1 cut(s) 175
TasI AATT 4 cut(s) 132, 568, 587, 629
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 4 cut(s) 177, 383, 469, 545
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 1 cut(s) 146
TseI GCWGC 3 cut(s) 4, 167, 259
TspDTI ATGAA 3 cut(s) 131, 143, 363
TspRI CASTG 1 cut(s) 146
XapI RAATTY 1 cut(s) 568
XbaI TCTAGA 1 cut(s) 79
XceI RCATGY 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.