WD40 repeats
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0001477.1_g000014 Rmu_sc0012764.1_g000006 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 3 cut(s) | 240, 421, 470 |
| AgsI | TTSAA | 2 cut(s) | 218, 323 |
| AluBI | AGCT | 1 cut(s) | 96 |
| AluI | AGCT | 1 cut(s) | 96 |
| Ama87I | CYCGRG | 1 cut(s) | 480 |
| AoxI | GGCC | 1 cut(s) | 278 |
| ApeKI | GCWGC | 1 cut(s) | 339 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 145 |
| AspLEI | GCGC | 1 cut(s) | 410 |
| AsuHPI | GGTGA | 2 cut(s) | 80, 362 |
| AvaI | CYCGRG | 1 cut(s) | 480 |
| BbvI | GCAGC | 1 cut(s) | 351 |
| BccI | CCATC | 1 cut(s) | 128 |
| BclI | TGATCA | 1 cut(s) | 364 |
| BfaI | CTAG | 3 cut(s) | 93, 282, 495 |
| BisI | GCNGC | 1 cut(s) | 340 |
| BlsI | GCNGC | 1 cut(s) | 341 |
| BmcAI | AGTACT | 1 cut(s) | 421 |
| BmeT110I | CYCGRG | 1 cut(s) | 480 |
| BmsI | GCATC | 1 cut(s) | 343 |
| BpmI | CTGGAG | 1 cut(s) | 209 |
| BpuEI | CTTGAG | 3 cut(s) | 22, 210, 408 |
| BsaBI | GATNNNNATC | 1 cut(s) | 369 |
| Bse1I | ACTGG | 1 cut(s) | 192 |
| Bse8I | GATNNNNATC | 1 cut(s) | 369 |
| BseGI | GGATG | 2 cut(s) | 139, 337 |
| BseJI | GATNNNNATC | 1 cut(s) | 369 |
| BseNI | ACTGG | 1 cut(s) | 192 |
| BseXI | GCAGC | 1 cut(s) | 351 |
| BshFI | GGCC | 1 cut(s) | 280 |
| BsiHKCI | CYCGRG | 1 cut(s) | 480 |
| BsnI | GGCC | 1 cut(s) | 280 |
| BsoBI | CYCGRG | 1 cut(s) | 480 |
| Bsp1407I | TGTACA | 1 cut(s) | 238 |
| Bsp143I | GATC | 2 cut(s) | 269, 364 |
| BspANI | GGCC | 1 cut(s) | 280 |
| BspHI | TCATGA | 1 cut(s) | 15 |
| BsrGI | TGTACA | 1 cut(s) | 238 |
| BsrI | ACTGG | 1 cut(s) | 192 |
| BssMI | GATC | 2 cut(s) | 269, 364 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 405 |
| BstAUI | TGTACA | 1 cut(s) | 238 |
| BstC8I | GCNNGC | 1 cut(s) | 26 |
| BstF5I | GGATG | 2 cut(s) | 139, 337 |
| BstHHI | GCGC | 1 cut(s) | 410 |
| BstKTI | GATC | 2 cut(s) | 272, 367 |
| BstMBI | GATC | 2 cut(s) | 269, 364 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 405 |
| BstV1I | GCAGC | 1 cut(s) | 351 |
| BsuRI | GGCC | 1 cut(s) | 280 |
| BtsCI | GGATG | 2 cut(s) | 139, 337 |
| BtsIMutI | CAGTG | 1 cut(s) | 185 |
| Cac8I | GCNNGC | 1 cut(s) | 26 |
| CciI | TCATGA | 1 cut(s) | 15 |
| CfoI | GCGC | 1 cut(s) | 410 |
| CseI | GACGC | 1 cut(s) | 242 |
| Csp6I | GTAC | 3 cut(s) | 239, 420, 469 |
| CviAII | CATG | 3 cut(s) | 16, 293, 400 |
| CviJI | RGCY | 4 cut(s) | 24, 96, 280, 304 |
| CviKI_1 | RGCY | 4 cut(s) | 24, 96, 280, 304 |
| CviQI | GTAC | 3 cut(s) | 239, 420, 469 |
| DpnI | GATC | 2 cut(s) | 271, 366 |
| DpnII | GATC | 2 cut(s) | 269, 364 |
| Eco147I | AGGCCT | 1 cut(s) | 280 |
| Eco88I | CYCGRG | 1 cut(s) | 480 |
| FaeI | CATG | 3 cut(s) | 19, 296, 403 |
| FaiI | YATR | 3 cut(s) | 17, 294, 401 |
| FatI | CATG | 3 cut(s) | 15, 292, 399 |
| FbaI | TGATCA | 1 cut(s) | 364 |
| Fnu4HI | GCNGC | 1 cut(s) | 340 |
| FokI | GGATG | 2 cut(s) | 146, 344 |
| Fsp4HI | GCNGC | 1 cut(s) | 340 |
| FspBI | CTAG | 3 cut(s) | 93, 282, 495 |
| GlaI | GCGC | 1 cut(s) | 409 |
| GluI | GCNGC | 1 cut(s) | 340 |
| GsuI | CTGGAG | 1 cut(s) | 209 |
| HaeIII | GGCC | 1 cut(s) | 280 |
| HgaI | GACGC | 1 cut(s) | 242 |
| HhaI | GCGC | 1 cut(s) | 410 |
| Hin1II | CATG | 3 cut(s) | 19, 296, 403 |
| Hin6I | GCGC | 1 cut(s) | 408 |
| HinP1I | GCGC | 1 cut(s) | 408 |
| HincII | GTYRAC | 2 cut(s) | 10, 124 |
| HindII | GTYRAC | 2 cut(s) | 10, 124 |
| HinfI | GANTC | 5 cut(s) | 182, 265, 314, 478, 490 |
| HphI | GGTGA | 2 cut(s) | 80, 362 |
| Hpy166II | GTNNAC | 4 cut(s) | 10, 124, 212, 232 |
| Hpy188I | TCNGA | 4 cut(s) | 32, 57, 114, 151 |
| Hpy188III | TCNNGA | 3 cut(s) | 16, 359, 413 |
| Hpy8I | GTNNAC | 4 cut(s) | 10, 124, 212, 232 |
| HpyAV | CCTTC | 4 cut(s) | 59, 65, 80, 207 |
| HpyCH4IV | ACGT | 1 cut(s) | 467 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 405 |
| HpySE526I | ACGT | 1 cut(s) | 467 |
| Hsp92II | CATG | 3 cut(s) | 19, 296, 403 |
| HspAI | GCGC | 1 cut(s) | 408 |
| Ksp22I | TGATCA | 1 cut(s) | 364 |
| Kzo9I | GATC | 2 cut(s) | 269, 364 |
| LmnI | GCTCC | 3 cut(s) | 33, 80, 415 |
| LpnPI | CCDG | 3 cut(s) | 173, 426, 519 |
| Lsp1109I | GCAGC | 1 cut(s) | 351 |
| LweI | GCATC | 1 cut(s) | 343 |
| MaeI | CTAG | 3 cut(s) | 93, 282, 495 |
| MaeII | ACGT | 1 cut(s) | 467 |
| MaeIII | GTNAC | 2 cut(s) | 254, 435 |
| MalI | GATC | 2 cut(s) | 271, 366 |
| MboI | GATC | 2 cut(s) | 269, 364 |
| MboII | GAAGA | 2 cut(s) | 257, 323 |
| MluCI | AATT | 2 cut(s) | 145, 380 |
| MlyI | GAGTC | 2 cut(s) | 259, 472 |
| MmeI | TCCRAC | 1 cut(s) | 372 |
| MnlI | CCTC | 5 cut(s) | 69, 148, 270, 278, 388 |
| MroXI | GAANNNNTTC | 1 cut(s) | 145 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 405 |
| NdeII | GATC | 2 cut(s) | 269, 364 |
| NlaIII | CATG | 3 cut(s) | 19, 296, 403 |
| PaeR7I | CTCGAG | 1 cut(s) | 480 |
| PagI | TCATGA | 1 cut(s) | 15 |
| PceI | AGGCCT | 1 cut(s) | 280 |
| PdmI | GAANNNNTTC | 1 cut(s) | 145 |
| PfeI | GAWTC | 3 cut(s) | 182, 314, 490 |
| PkrI | GCNGC | 1 cut(s) | 341 |
| PleI | GAGTC | 2 cut(s) | 259, 472 |
| PpsI | GAGTC | 2 cut(s) | 259, 472 |
| PspXI | VCTCGAGB | 1 cut(s) | 480 |
| RsaI | GTAC | 3 cut(s) | 240, 421, 470 |
| RsaNI | GTAC | 3 cut(s) | 239, 420, 469 |
| SatI | GCNGC | 1 cut(s) | 340 |
| Sau3AI | GATC | 2 cut(s) | 269, 364 |
| ScaI | AGTACT | 1 cut(s) | 421 |
| SchI | GAGTC | 2 cut(s) | 259, 472 |
| SetI | ASST | 6 cut(s) | 70, 91, 98, 159, 470, 508 |
| SfaNI | GCATC | 1 cut(s) | 343 |
| Sfr274I | CTCGAG | 1 cut(s) | 480 |
| SlaI | CTCGAG | 1 cut(s) | 480 |
| SmlI | CTYRAG | 4 cut(s) | 37, 225, 423, 480 |
| SmoI | CTYRAG | 4 cut(s) | 37, 225, 423, 480 |
| Sse9I | AATT | 2 cut(s) | 145, 380 |
| SseBI | AGGCCT | 1 cut(s) | 280 |
| SspMI | CTAG | 3 cut(s) | 93, 282, 495 |
| StuI | AGGCCT | 1 cut(s) | 280 |
| TaiI | ACGT | 1 cut(s) | 470 |
| TaqI | TCGA | 2 cut(s) | 268, 481 |
| TasI | AATT | 2 cut(s) | 145, 380 |
| TatI | WGTACW | 2 cut(s) | 238, 419 |
| TfiI | GAWTC | 3 cut(s) | 182, 314, 490 |
| TscAI | CASTG | 1 cut(s) | 192 |
| TseI | GCWGC | 1 cut(s) | 339 |
| TspDTI | ATGAA | 2 cut(s) | 17, 32 |
| TspGWI | ACGGA | 1 cut(s) | 218 |
| TspRI | CASTG | 1 cut(s) | 192 |
| XhoI | CTCGAG | 1 cut(s) | 480 |
| XmnI | GAANNNNTTC | 1 cut(s) | 145 |
| XspI | CTAG | 3 cut(s) | 93, 282, 495 |
| ZrmI | AGTACT | 1 cut(s) | 421 |