Rmu_sc0013038.1_g000005

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013038.1
OG0025064
Physical Location & Seq
Forward (+)
14121 .. 15002
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013038.1_g000005.1.cds

Sequence Viewer

Length: 549 bp
atggaatcgctacaaagccaagtggagtcttggctgaggggttgggagaagcgagccaagctcttgaaggtgtccgggggcccactccagtggaggatgaggtggccttggattctcaacgacggctacagggagcagcggaagaggatccacgaggagtacgagcgtcgccggaagcagctccacgatctctgcgccgccgtcaaggctaactccatctccgacttgcaggacattttctgctgcatggtgctttcagagtgcgtctataagatacctgcttcggacttggttcacgcggtgaacagattcaaggctgactttggaggacagattgttgcgctggagcgtgatcagcctttttctgatcacgttcctcacagttacttgttggcggaagcaggtgatacattcgatgtgatgaccgatgcaaacatactgcaaggtgctatatttcataaggatcctgtggaggatactgatgggactaatccacctggaagtcgtaagggaaatgaaggatactgctacttctacctccgaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

182

Amino Acids

21.05

Weight (kDa)

6.3

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025064)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0283341
rosa_multiflora Rmu_sc0013038.1_g000005
rosa_samantha Rh6DG261400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 392
Acc36I ACCTGC 2 cut(s) 286, 392
AccII CGCG 1 cut(s) 299
AciI CCGC 4 cut(s) 139, 198, 299, 395
AclWI GGATC 4 cut(s) 142, 155, 458, 471
AdeI CACNNNGTG 1 cut(s) 301
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 2 cut(s) 67, 313
AjnI CCWGG 1 cut(s) 496
AleI CACNNNNGTG 1 cut(s) 88
AluBI AGCT 2 cut(s) 61, 181
AluI AGCT 2 cut(s) 61, 181
AlwI GGATC 4 cut(s) 142, 155, 458, 471
AoxI GGCC 2 cut(s) 79, 104
ApaI GGGCCC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 136, 178, 243
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 2 cut(s) 197, 343
AspS9I GGNCC 2 cut(s) 79, 80
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 313, 416
BaeGI GKGCMC 1 cut(s) 83
BamHI GGATCC 2 cut(s) 147, 463
BanII GRGCYC 1 cut(s) 83
BauI CACGAG 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 35
BbvI GCAGC 3 cut(s) 148, 190, 230
BccI CCATC 2 cut(s) 224, 476
BceAI ACGGC 2 cut(s) 139, 185
BciT130I CCWGG 1 cut(s) 498
BciVI GTATCC 2 cut(s) 469, 515
BclI TGATCA 2 cut(s) 352, 367
BcnI CCSGG 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 127
BfuAI ACCTGC 2 cut(s) 286, 392
BfuI GTATCC 2 cut(s) 469, 515
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 4 cut(s) 137, 179, 198, 244
BlsI GCNGC 4 cut(s) 138, 180, 199, 245
Bme1390I CCNGG 2 cut(s) 76, 498
BmgT120I GGNCC 2 cut(s) 79, 80
BmiI GGNNCC 4 cut(s) 80, 81, 149, 465
BmrFI CCNGG 2 cut(s) 76, 498
BmsI GCATC 1 cut(s) 418
BplI GAGNNNNNCTC 2 cut(s) 45, 77
BpmI CTGGAG 2 cut(s) 71, 365
Bpu10I CCTNAGC 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 75, 107
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 75, 107
BseGI GGATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 3 cut(s) 148, 190, 230
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 2 cut(s) 81, 106
BsiSI CCGG 2 cut(s) 75, 172
BslFI GGGAC 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 2 cut(s) 81, 106
Bsp120I GGGCCC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 5 cut(s) 147, 187, 352, 367, 463
BspACI CCGC 4 cut(s) 139, 198, 299, 395
BspANI GGCC 2 cut(s) 81, 106
BspCNI CTCAG 1 cut(s) 27
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 4 cut(s) 80, 81, 149, 465
BspMI ACCTGC 2 cut(s) 286, 392
BspPI GGATC 4 cut(s) 142, 155, 458, 471
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 75, 107
BssMI GATC 5 cut(s) 147, 187, 352, 367, 463
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 299
BstHHI GCGC 2 cut(s) 197, 343
BstKTI GATC 5 cut(s) 150, 190, 355, 370, 466
BstMBI GATC 5 cut(s) 147, 187, 352, 367, 463
BstMWI GCNNNNNNNGC 3 cut(s) 58, 206, 355
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 2 cut(s) 74, 496
BstSFI CTRYAG 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 83
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 3 cut(s) 148, 190, 230
BstX2I RGATCY 2 cut(s) 147, 463
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 2 cut(s) 147, 463
BsuI GTATCC 2 cut(s) 469, 515
BsuRI GGCC 2 cut(s) 81, 106
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 95
BveI ACCTGC 2 cut(s) 286, 392
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 2 cut(s) 197, 343
Cfr13I GGNCC 2 cut(s) 79, 80
CseI GACGC 2 cut(s) 155, 253
Csp6I GTAC 1 cut(s) 160
CviAII CATG 1 cut(s) 247
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 35
DpnI GATC 5 cut(s) 149, 189, 354, 369, 465
DpnII GATC 5 cut(s) 147, 187, 352, 367, 463
DraIII CACNNNGTG 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EciI GGCGGA 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 1 cut(s) 250
FaiI YATR 6 cut(s) 248, 270, 437, 452, 459, 547
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 1 cut(s) 499
FatI CATG 1 cut(s) 246
FbaI TGATCA 2 cut(s) 352, 367
Fnu4HI GCNGC 4 cut(s) 137, 179, 198, 244
FokI GGATG 1 cut(s) 109
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 4 cut(s) 137, 179, 198, 244
GlaI GCGC 2 cut(s) 196, 342
GluI GCNGC 4 cut(s) 137, 179, 198, 244
GsuI CTGGAG 2 cut(s) 71, 365
HaeIII GGCC 2 cut(s) 81, 106
HapII CCGG 2 cut(s) 75, 172
HgaI GACGC 2 cut(s) 155, 253
HhaI GCGC 2 cut(s) 197, 343
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 2 cut(s) 195, 341
HinP1I GCGC 2 cut(s) 195, 341
HinfI GANTC 4 cut(s) 5, 26, 112, 309
HpaII CCGG 2 cut(s) 75, 172
HphI GGTGA 2 cut(s) 313, 416
Hpy166II GTNNAC 2 cut(s) 295, 304
Hpy188I TCNGA 5 cut(s) 223, 259, 286, 367, 542
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 295, 304
Hpy99I CGWCG 2 cut(s) 125, 171
HpyAV CCTTC 2 cut(s) 61, 512
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 229, 246, 431, 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 206, 355
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 2 cut(s) 195, 341
Ksp22I TGATCA 2 cut(s) 352, 367
Kzo9I GATC 5 cut(s) 147, 187, 352, 367, 463
LmnI GCTCC 3 cut(s) 133, 186, 346
Lsp1109I GCAGC 3 cut(s) 148, 190, 230
LweI GCATC 1 cut(s) 418
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 383
MalI GATC 5 cut(s) 149, 189, 354, 369, 465
MboI GATC 5 cut(s) 147, 187, 352, 367, 463
MboII GAAGA 1 cut(s) 154
MflI RGATCY 2 cut(s) 147, 463
MhlI GDGCHC 1 cut(s) 83
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 9 cut(s) 30, 87, 93, 138, 148, 320, 387, 466, 548
MroXI GAANNNNTTC 1 cut(s) 308
MslI CAYNNNNRTG 1 cut(s) 88
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 2 cut(s) 75, 172
MspR9I CCNGG 2 cut(s) 76, 498
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 58, 206, 355
NciI CCSGG 1 cut(s) 76
NdeII GATC 5 cut(s) 147, 187, 352, 367, 463
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 4 cut(s) 80, 81, 149, 465
OliI CACNNNNGTG 1 cut(s) 88
PaqCI CACCTGC 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 3 cut(s) 5, 112, 309
PkrI GCNGC 4 cut(s) 138, 180, 199, 245
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 4 cut(s) 80, 81, 149, 465
PspOMI GGGCCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 79, 80
PsuI RGATCY 2 cut(s) 147, 463
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 88
SatI GCNGC 4 cut(s) 137, 179, 198, 244
Sau3AI GATC 5 cut(s) 147, 187, 352, 367, 463
Sau96I GGNCC 2 cut(s) 79, 80
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 76, 498
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 88
SsiI CCGC 4 cut(s) 139, 198, 299, 395
StyD4I CCNGG 2 cut(s) 74, 496
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 414
TaqII GACCGA 1 cut(s) 440
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 3 cut(s) 5, 112, 309
TscAI CASTG 1 cut(s) 95
TseI GCWGC 3 cut(s) 136, 178, 243
TspDTI ATGAA 2 cut(s) 446, 531
TspRI CASTG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.