Rmu_sc0013603.1_g000019

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013603.1
Physical Location & Seq
Reverse (-)
92001 .. 92393
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013603.1_g000019.1.cds

Sequence Viewer

Length: 393 bp
atggattcttctttgcgggatctaactgctttaaagaatgatatcaagagaagagttgcagccgctgagcagcagacgctaatgaagctgttagatcaagtacaaagctggatttcaagggtggaagcagtagaggcacaagttagtcaagttgtcaatgatgctccgcaacatattgagaaattgtgttgtaaaggctattgttcaaaacactacatatccagttacaagtatgggaaaaaagttgccaaaaaattggtggaactctgtgatttgaagaacaaaggagaacatattgaagaggtggcagcaaaaatcatacttgcagctttagtcaatgaaagacttctagagccaaccgtgggcatggaaattatgattaataaggtctag

Protein Analysis

130

Amino Acids

14.65

Weight (kDa)

8.64

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0023135)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0013603.1_g000019
rosa_roxburghii Rroxscaffold_1G00073130
rosa_samantha Rh5AG022500 Rh5CG024700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 16, 63, 167
AclWI GGATC 1 cut(s) 27
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 4 cut(s) 117, 207, 277, 299
AluBI AGCT 3 cut(s) 88, 108, 329
AluI AGCT 3 cut(s) 88, 108, 329
AlwI GGATC 1 cut(s) 27
AlwNI CAGNNNCTG 1 cut(s) 65
ApeKI GCWGC 4 cut(s) 59, 70, 308, 326
AseI ATTAAT 1 cut(s) 381
Asp700I GAANNNNTTC 1 cut(s) 345
BbvI GCAGC 4 cut(s) 71, 82, 320, 338
BfaI CTAG 2 cut(s) 350, 391
BisI GCNGC 5 cut(s) 60, 63, 71, 309, 327
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 5 cut(s) 61, 64, 72, 310, 328
BmsI GCATC 1 cut(s) 151
Bpu1102I GCTNAGC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 360
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 222
BseXI GCAGC 4 cut(s) 71, 82, 320, 338
BslI CCNNNNNNNGG 1 cut(s) 362
Bsp143I GATC 2 cut(s) 19, 94
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 3 cut(s) 16, 63, 167
BspCNI CTCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 27
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 2 cut(s) 19, 94
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 2 cut(s) 46, 294
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 360
BstKTI GATC 2 cut(s) 22, 97
BstMBI GATC 2 cut(s) 19, 94
BstMWI GCNNNNNNNGC 3 cut(s) 76, 85, 134
BstV1I GCAGC 4 cut(s) 71, 82, 320, 338
BstX2I RGATCY 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 360
CaiI CAGNNNCTG 1 cut(s) 65
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 367
CviJI RGCY 6 cut(s) 62, 88, 108, 198, 329, 355
CviKI_1 RGCY 6 cut(s) 62, 88, 108, 198, 329, 355
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 21, 96
DpnII GATC 2 cut(s) 19, 94
DraI TTTAAA 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 46, 294
EarI CTCTTC 2 cut(s) 46, 294
Eco32I GATATC 1 cut(s) 43
EcoRV GATATC 1 cut(s) 43
FaeI CATG 1 cut(s) 370
FaiI YATR 7 cut(s) 174, 218, 234, 294, 320, 368, 377
FatI CATG 1 cut(s) 366
FauI CCCGC 1 cut(s) 9
Fnu4HI GCNGC 5 cut(s) 60, 63, 71, 309, 327
Fsp4HI GCNGC 5 cut(s) 60, 63, 71, 309, 327
FspBI CTAG 2 cut(s) 350, 391
GluI GCNGC 5 cut(s) 60, 63, 71, 309, 327
HgaI GACGC 1 cut(s) 85
Hin1II CATG 1 cut(s) 370
HinfI GANTC 1 cut(s) 5
Hpy188III TCNNGA 2 cut(s) 46, 350
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 2 cut(s) 59, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 85, 134
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 1 cut(s) 370
Kzo9I GATC 2 cut(s) 19, 94
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 2 cut(s) 94, 235
Lsp1109I GCAGC 4 cut(s) 71, 82, 320, 338
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 350, 391
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 21, 96
MboI GATC 2 cut(s) 19, 94
MboII GAAGA 3 cut(s) 63, 289, 311
MflI RGATCY 1 cut(s) 19
MluCI AATT 3 cut(s) 182, 254, 372
MnlI CCTC 2 cut(s) 127, 295
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 2 cut(s) 32, 381
MspA1I CMGCKG 1 cut(s) 65
MwoI GCNNNNNNNGC 3 cut(s) 76, 85, 134
NdeII GATC 2 cut(s) 19, 94
NlaIII CATG 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 5 cut(s) 61, 64, 72, 310, 328
PshBI ATTAAT 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 32, 381
SatI GCNGC 5 cut(s) 60, 63, 71, 309, 327
Sau3AI GATC 2 cut(s) 19, 94
SetI ASST 5 cut(s) 90, 110, 306, 331, 390
SfaNI GCATC 1 cut(s) 151
Sse9I AATT 3 cut(s) 182, 254, 372
SsiI CCGC 3 cut(s) 16, 63, 167
SspMI CTAG 2 cut(s) 350, 391
TaaI ACNGT 1 cut(s) 361
TasI AATT 3 cut(s) 182, 254, 372
TatI WGTACW 1 cut(s) 100
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 32, 381
Tru9I TTAA 2 cut(s) 32, 381
TseI GCWGC 4 cut(s) 59, 70, 308, 326
TspDTI ATGAA 2 cut(s) 98, 354
VspI ATTAAT 1 cut(s) 381
XbaI TCTAGA 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 2 cut(s) 350, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.