Rmu_sc0018345.1_g000001

Sister chromatid cohesion protein PDS5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018345.1
OG0029351
Physical Location & Seq
Forward (+)
247 .. 1015
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018345.1_g000001.1.cds

Sequence Viewer

Length: 573 bp
atggacgagtctgcccttcaactcgtcgccaaaatcggcaaccagctccgccgtcaaacccgtcctaacaaggactccgtcgtcaaatcgctccgagaagctacagtggctttggcggagctagagcagccttcaggctccacaaagagggaagccaccaggaaactagaagcggctatagagcctctgaaggaaaccattgttaaaggcttgcttcggcatcgagataaggatgtgaggcttttagtggccatctgtgccactgagatgatgagactcatggcaccggaaccgccttttgaggacagagatctcagagatgtgtttaagcttcttgtgagtgtgtttgcggagctaggtgataccgcaaactcgctgttttcaaagagggctaagatagtggagattgttgcaaagttgaagtgttgtgtgatcatgttggacattgactgtaatgatgttgttcttgacatgttcaatactttcttctctgtcgtgaggttagcatcttgcatttcttgtatatcttttgggatctatatgtttcattttactttacagttaaacccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.4

Weight (kDa)

8.21

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029351)

Species Orthologous Gene IDs
pyrus_communis pycom08g14130
rosa_multiflora Rmu_sc0018345.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 283
AciI CCGC 6 cut(s) 49, 116, 173, 293, 350, 366
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 117, 209
AfiI CCNNNNNNNGG 1 cut(s) 147
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 4 cut(s) 20, 384, 421, 478
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 5 cut(s) 46, 101, 121, 331, 355
AluI AGCT 5 cut(s) 46, 101, 121, 331, 355
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 542
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 371
BalI TGGCCA 1 cut(s) 251
BanI GGYRCC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 160
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 4 cut(s) 122, 167, 356, 571
BfmI CTRYAG 2 cut(s) 102, 177
BglII AGATCT 1 cut(s) 310
BisI GCNGC 2 cut(s) 128, 174
BlsI GCNGC 2 cut(s) 129, 175
Bme1390I CCNGG 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 139, 285, 291
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 229, 515
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 255, 328
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 1 cut(s) 251
Bsp143I GATC 3 cut(s) 310, 432, 534
BspACI CCGC 6 cut(s) 49, 116, 173, 293, 350, 366
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 2 cut(s) 256, 327
BspLI GGNNCC 3 cut(s) 139, 285, 291
BspPI GGATC 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 283
BssMI GATC 3 cut(s) 310, 432, 534
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 106, 452, 561
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 3 cut(s) 264, 314, 393
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 3 cut(s) 313, 435, 537
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 3 cut(s) 310, 432, 534
BstMWI GCNNNNNNNGC 3 cut(s) 107, 127, 257
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 2 cut(s) 102, 177
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 2 cut(s) 310, 534
BstYI RGATCY 2 cut(s) 310, 534
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 111, 261
Cac8I GCNNGC 1 cut(s) 212
CviAII CATG 3 cut(s) 280, 436, 472
DdeI CTNAG 3 cut(s) 264, 314, 393
DpnI GATC 3 cut(s) 312, 434, 536
DpnII GATC 3 cut(s) 310, 432, 534
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 249
EciI GGCGGA 2 cut(s) 38, 131
Eco57I CTGAAG 2 cut(s) 117, 209
EcoRII CCWGG 1 cut(s) 158
FaeI CATG 3 cut(s) 283, 439, 475
FaiI YATR 7 cut(s) 179, 281, 437, 473, 524, 540, 542
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 3 cut(s) 279, 435, 471
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 128, 174
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 128, 174
FspBI CTAG 4 cut(s) 122, 167, 356, 571
GluI GCNGC 2 cut(s) 128, 174
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 287
Hin1II CATG 3 cut(s) 283, 439, 475
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 3 cut(s) 8, 74, 276
HpaII CCGG 1 cut(s) 287
HphI GGTGA 1 cut(s) 371
Hpy188I TCNGA 3 cut(s) 95, 189, 317
Hpy188III TCNNGA 3 cut(s) 224, 467, 496
Hpy99I CGWCG 2 cut(s) 29, 83
HpyAV CCTTC 3 cut(s) 26, 141, 184
HpyCH4III ACNGT 3 cut(s) 106, 452, 561
HpyCH4V TGCA 2 cut(s) 413, 513
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 127, 257
HpyF3I CTNAG 3 cut(s) 264, 314, 393
Hsp92II CATG 3 cut(s) 283, 439, 475
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 3 cut(s) 310, 432, 534
LmnI GCTCC 5 cut(s) 51, 96, 118, 143, 352
LpnPI CCDG 5 cut(s) 56, 120, 145, 172, 300
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 229, 515
MaeI CTAG 4 cut(s) 122, 167, 356, 571
MalI GATC 3 cut(s) 312, 434, 536
MboI GATC 3 cut(s) 310, 432, 534
MboII GAAGA 1 cut(s) 478
MflI RGATCY 2 cut(s) 310, 534
MlsI TGGCCA 1 cut(s) 251
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 3 cut(s) 17, 68, 270
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 6 cut(s) 141, 195, 231, 295, 381, 492
Mox20I TGGCCA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 251
MseI TTAA 3 cut(s) 204, 327, 563
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 107, 127, 257
NdeII GATC 3 cut(s) 310, 432, 534
NlaIII CATG 3 cut(s) 283, 439, 475
NlaIV GGNNCC 3 cut(s) 139, 285, 291
NspI RCATGY 1 cut(s) 475
PciI ACATGT 1 cut(s) 471
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 129, 175
PleI GAGTC 3 cut(s) 16, 68, 270
PpsI GAGTC 3 cut(s) 16, 68, 270
PscI ACATGT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 139, 285, 291
PsuI RGATCY 2 cut(s) 310, 534
PsyI GACNNNGTC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 3 cut(s) 204, 327, 563
SatI GCNGC 2 cut(s) 128, 174
Sau3AI GATC 3 cut(s) 310, 432, 534
SchI GAGTC 3 cut(s) 17, 68, 270
ScrFI CCNGG 1 cut(s) 160
SetI ASST 7 cut(s) 48, 103, 123, 333, 357, 361, 503
SfaNI GCATC 2 cut(s) 229, 515
SfcI CTRYAG 2 cut(s) 102, 177
SmiMI CAYNNNNRTG 1 cut(s) 266
SsiI CCGC 6 cut(s) 49, 116, 173, 293, 350, 366
SspMI CTAG 4 cut(s) 122, 167, 356, 571
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 3 cut(s) 106, 452, 561
TaqI TCGA 1 cut(s) 223
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 3 cut(s) 204, 327, 563
Tru9I TTAA 3 cut(s) 204, 327, 563
TscAI CASTG 2 cut(s) 111, 268
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 536
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 2 cut(s) 111, 268
Tth111I GACNNNGTC 1 cut(s) 77
XceI RCATGY 1 cut(s) 475
XspI CTAG 4 cut(s) 122, 167, 356, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.