Rmu_sc0018675.1_g000003
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018675.1
OG0029232
Physical Location & Seq
Reverse (-)
5217 .. 5639
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018675.1_g000003.1.cds

Sequence Viewer

Length: 423 bp
atgtcttttgttgggactcacgaatacttggcccctgagattgtgtccggtgaggggcatggtagtgcggtggactggtggacattagggatatttatatttgaactcttctacggtgtgacaccgttcaagggtgtggacaatgagctaaccctggctaatattgttgctcgagccttggagcttccgaaagaacctgccgtgccctccacggcaaaggacctcatctcacagcttttggccaaggacccggacaggcgattgggatcgttaatgggtgcatcagctatcaaacgacacccatttttccaaggggtcaattgggcactattgagatgtactcctccaccatttattcccccaccatttagtagacgccttgtatcaaatcaaacttgtcctgagaaagtggattattattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

140

Amino Acids

15.54

Weight (kDa)

6.28

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029232)

Species Orthologous Gene IDs
pyrus_communis pycom03g09360
rosa_multiflora Rmu_sc0018675.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AccI GTMKAC 1 cut(s) 373
AciI CCGC 1 cut(s) 68
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 2 cut(s) 54, 131
AgsI TTSAA 2 cut(s) 104, 130
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 4 cut(s) 148, 184, 235, 287
AluI AGCT 4 cut(s) 148, 184, 235, 287
AlwI GGATC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 2 cut(s) 30, 240
AspS9I GGNCC 3 cut(s) 31, 220, 247
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 2 cut(s) 220, 247
BaeGI GKGCMC 2 cut(s) 207, 328
BalI TGGCCA 1 cut(s) 242
BceAI ACGGC 2 cut(s) 185, 228
BciT130I CCWGG 1 cut(s) 155
BcnI CCSGG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 155, 251
Bme18I GGWCC 2 cut(s) 220, 247
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 3 cut(s) 31, 220, 247
BmiI GGNNCC 2 cut(s) 33, 249
BmrFI CCNGG 2 cut(s) 155, 251
BmsI GCATC 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpuMI CCSGG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 376
BsaJI CCNNGG 5 cut(s) 153, 177, 210, 243, 310
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 131
Bse1I ACTGG 1 cut(s) 80
Bse8I GATNNNNATC 1 cut(s) 265
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 5 cut(s) 153, 177, 210, 243, 310
BseJI GATNNNNATC 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 54, 131
BseMII CTCAG 2 cut(s) 27, 393
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 333
BseSI GKGCMC 2 cut(s) 207, 328
BshFI GGCC 2 cut(s) 32, 242
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 2 cut(s) 48, 251
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 54, 131
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 2 cut(s) 32, 242
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 207, 328
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 1 cut(s) 68
BspANI GGCC 2 cut(s) 32, 242
BspCNI CTCAG 2 cut(s) 28, 394
BspLI GGNNCC 2 cut(s) 33, 249
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 274
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 5 cut(s) 153, 177, 210, 243, 310
BssMI GATC 1 cut(s) 266
BssNI GRCGYC 1 cut(s) 376
BssT1I CCWWGG 3 cut(s) 177, 243, 310
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 116, 126
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 36, 402
BstDSI CCRYGG 1 cut(s) 210
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 153, 249
BstSLI GKGCMC 2 cut(s) 207, 328
BsuRI GGCC 2 cut(s) 32, 242
BtgI CCRYGG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 205
Cfr13I GGNCC 3 cut(s) 31, 220, 247
CseI GACGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 339
CviAII CATG 1 cut(s) 59
CviJI RGCY 8 cut(s) 32, 148, 158, 176, 184, 235, 242, 287
CviKI_1 RGCY 8 cut(s) 32, 148, 158, 176, 184, 235, 242, 287
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 2 cut(s) 36, 402
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 3 cut(s) 177, 243, 310
Eco47I GGWCC 2 cut(s) 220, 247
Eco88I CYCGRG 1 cut(s) 171
EcoO109I RGGNCCY 2 cut(s) 220, 247
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 3 cut(s) 177, 243, 310
ErhI CCWWGG 3 cut(s) 177, 243, 310
FaeI CATG 1 cut(s) 62
FaiI YATR 2 cut(s) 60, 98
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 58
FblI GTMKAC 1 cut(s) 373
HaeIII GGCC 2 cut(s) 32, 242
HapII CCGG 2 cut(s) 48, 251
HgaI GACGC 1 cut(s) 384
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 1 cut(s) 62
HinfI GANTC 1 cut(s) 16
HpaII CCGG 2 cut(s) 48, 251
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 4 cut(s) 73, 81, 139, 374
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 20, 401
Hpy8I GTNNAC 4 cut(s) 73, 81, 139, 374
HpyCH4III ACNGT 2 cut(s) 116, 126
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 36, 402
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 1 cut(s) 62
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 9 cut(s) 48, 61, 61, 140, 167, 210, 241, 264, 414
LweI GCATC 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 1 cut(s) 100
MfeI CAATTG 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 207, 328
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 1 cut(s) 319
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 4 cut(s) 46, 217, 233, 354
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 63
Msp20I TGGCCA 1 cut(s) 242
MspI CCGG 2 cut(s) 48, 251
MspR9I CCNGG 2 cut(s) 155, 251
MunI CAATTG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 155
NciI CCSGG 1 cut(s) 251
NdeII GATC 1 cut(s) 266
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 2 cut(s) 33, 249
NmuCI GTSAC 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 171
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 2 cut(s) 220, 247
Psp5II RGGWCCY 2 cut(s) 220, 247
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 33, 249
PspPI GGNCC 3 cut(s) 31, 220, 247
PspPPI RGGWCCY 2 cut(s) 220, 247
PspXI VCTCGAGB 1 cut(s) 171
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 272
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 3 cut(s) 31, 220, 247
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 2 cut(s) 155, 251
SduI GDGCHC 2 cut(s) 207, 328
SetI ASST 6 cut(s) 150, 186, 199, 225, 237, 289
SfaNI GCATC 1 cut(s) 290
Sfr274I CTCGAG 1 cut(s) 171
SinI GGWCC 2 cut(s) 220, 247
SlaI CTCGAG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse9I AATT 1 cut(s) 319
SsiI CCGC 1 cut(s) 68
SspI AATATT 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 153, 249
StyI CCWWGG 3 cut(s) 177, 243, 310
TaaI ACNGT 2 cut(s) 116, 126
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 319
TatI WGTACW 1 cut(s) 338
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 220, 247
XhoI CTCGAG 1 cut(s) 171
XmiI GTMKAC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.