Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021263.1

Orthogroup ID

OG0031521

Physical Location & Seq

Genomic Coordinates Forward (+)

947 .. 1305

Gene Structure 359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021263.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 359 bp

atgcctgcttggtggggaaggaagtcaagcaagaccaaaaccgacgcgccggataagtcactcaacccttacagcaaccgctacgccgtcaacgccgcagtcaagtcgccgccgatcaagaccgagagaggcaggagcttcgatgagcccacgccgcgtggctcgccgagagtcagtaaggatttggggacggttgtaaacgggtcgacgtccggcttctcgggtttcgattccgatggcggcggctccaagggacatccgctgccgcggccgtcgctgcagggagtgggaaatgatcaggggattgggttgggatctgcgtccggatcggtttccagtgggacttcgtcggtgtcgtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

120

Amino Acids

12.25

Weight (kDa)

9.99

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031521)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0021263.1_g000001
rosa_samantha	Rh2AG288200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	3 cut(s)	47, 157, 268
AccIII	TCCGGA	1 cut(s)	323
AciI	CCGC	9 cut(s)	79, 96, 110, 155, 240, 243, 260, 266, 268
AclWI	GGATC	2 cut(s)	322, 334
AcoI	YGGCCR	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	209
AluBI	AGCT	1 cut(s)	138
AluI	AGCT	1 cut(s)	138
AlwI	GGATC	2 cut(s)	322, 334
Ama87I	CYCGRG	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	323
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	262, 277
AspLEI	GCGC	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	249, 264
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	71, 256
BcgI	CGANNNNNNTGC	4 cut(s)	87, 121, 121, 155
BclI	TGATCA	1 cut(s)	295
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	9 cut(s)	96, 110, 155, 241, 244, 263, 266, 269, 278
BlsI	GCNGC	9 cut(s)	97, 111, 156, 242, 245, 264, 267, 270, 279
BmeT110I	CYCGRG	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	249, 266
BsaWI	WCCGGW	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	336
BseAI	TCCGGA	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	249, 266
BseGI	GGATG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	336
BseX3I	CGGCCG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	249, 264
Bsh1236I	CGCG	3 cut(s)	47, 157, 268
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	3 cut(s)	50, 213, 324
BslFI	GGGAC	3 cut(s)	202, 267, 355
BsmFI	GGGAC	3 cut(s)	202, 267, 355
BsnI	GGCC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp13I	TCCGGA	1 cut(s)	323
Bsp143I	GATC	4 cut(s)	114, 295, 314, 326
BspACI	CCGC	9 cut(s)	79, 96, 110, 155, 240, 243, 260, 266, 268
BspANI	GGCC	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	323
BspFNI	CGCG	3 cut(s)	47, 157, 268
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	2 cut(s)	322, 334
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	249, 266
BssMI	GATC	4 cut(s)	114, 295, 314, 326
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	6, 164
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	3 cut(s)	47, 157, 268
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	4 cut(s)	117, 298, 317, 329
BstMBI	GATC	4 cut(s)	114, 295, 314, 326
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 154, 163, 268, 274, 277
BstSFI	CTRYAG	1 cut(s)	278
BstUI	CGCG	3 cut(s)	47, 157, 268
BstV1I	GCAGC	2 cut(s)	249, 264
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BstZI	CGGCCG	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	2 cut(s)	6, 164
CfoI	GCGC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	269
CseI	GACGC	2 cut(s)	53, 309
CviJI	RGCY	6 cut(s)	138, 148, 162, 216, 246, 271
CviKI_1	RGCY	6 cut(s)	138, 148, 162, 216, 246, 271
DpnI	GATC	4 cut(s)	116, 297, 316, 328
DpnII	GATC	4 cut(s)	114, 295, 314, 326
EaeI	YGGCCR	1 cut(s)	269
EagI	CGGCCG	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	150
Eco52I	CGGCCG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	249
FaqI	GGGAC	3 cut(s)	202, 267, 355
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	9 cut(s)	96, 110, 155, 241, 244, 263, 266, 269, 278
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	9 cut(s)	96, 110, 155, 241, 244, 263, 266, 269, 278
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	9 cut(s)	96, 110, 155, 241, 244, 263, 266, 269, 278
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	3 cut(s)	50, 213, 324
HgaI	GACGC	2 cut(s)	53, 309
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	2 cut(s)	91, 207
HindII	GTYRAC	2 cut(s)	91, 207
HinfI	GANTC	2 cut(s)	171, 230
HpaII	CCGG	3 cut(s)	50, 213, 324
Hpy166II	GTNNAC	3 cut(s)	91, 199, 207
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	118, 324
Hpy8I	GTNNAC	3 cut(s)	91, 199, 207
Hpy99I	CGWCG	4 cut(s)	47, 211, 277, 352
HpyAV	CCTTC	1 cut(s)	12
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 154, 163, 268, 274, 277
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	209
HspAI	GCGC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	295
KspI	CCGCGG	1 cut(s)	269
Kzo9I	GATC	4 cut(s)	114, 295, 314, 326
LmnI	GCTCC	2 cut(s)	135, 251
LpnPI	CCDG	8 cut(s)	18, 63, 118, 226, 266, 284, 337, 349
Lsp1109I	GCAGC	2 cut(s)	249, 264
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	4 cut(s)	116, 297, 316, 328
MboI	GATC	4 cut(s)	114, 295, 314, 326
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	323
MspA1I	CMGCKG	2 cut(s)	262, 268
MspI	CCGG	3 cut(s)	50, 213, 324
MvnI	CGCG	3 cut(s)	47, 157, 268
MwoI	GCNNNNNNNGC	6 cut(s)	92, 154, 163, 268, 274, 277
NdeII	GATC	4 cut(s)	114, 295, 314, 326
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	346
PkrI	GCNGC	9 cut(s)	97, 111, 156, 242, 245, 264, 267, 270, 279
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	314
PsyI	GACNNNGTC	1 cut(s)	346
SacII	CCGCGG	1 cut(s)	269
SalI	GTCGAC	1 cut(s)	205
SatI	GCNGC	9 cut(s)	96, 110, 155, 241, 244, 263, 266, 269, 278
Sau3AI	GATC	4 cut(s)	114, 295, 314, 326
SchI	GAGTC	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	2 cut(s)	140, 212
SfcI	CTRYAG	1 cut(s)	278
Sfr303I	CCGCGG	1 cut(s)	269
SgrBI	CCGCGG	1 cut(s)	269
SsiI	CCGC	9 cut(s)	79, 96, 110, 155, 240, 243, 260, 266, 268
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	3 cut(s)	141, 206, 228
TaqII	GACCGA	1 cut(s)	137
TauI	GCSGC	7 cut(s)	98, 112, 157, 243, 246, 268, 271
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	262, 277
Tsp45I	GTSAC	1 cut(s)	57
TspRI	CASTG	1 cut(s)	343
Tth111I	GACNNNGTC	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	206
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.