Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0031521

Physical Location & Seq

Genomic Coordinates Forward (+)

35302560 .. 35306951

Gene Structure 4392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG288200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCCTGCTTGGTGGGGAAGGAAGTCAAGCAAGACCAAAACCGACGCGCCGGATAAGTCACTCAACCCTTACAGCAACCGCTACGCCGTCACCGCCGCAGTCAAGTCGCCGCCGATCAAGACCGAGAGAGGCAGGAGCTTCGATGAGCCCACGCCGCGTGGCTCGCCGAGAGTCAGTAAGGATTTGGGGACGGTTGTAAACGGGTCGACGTCCGGCTTCTCGGGTTTCGATTCCGATGGCGGCGGCTCCAAGGGACATCCGCTGCCGCGGCCGTCGGTGTCGTCGCTGCAGGGAGTGGGAAATGATCAGGGGATTGGGTTGGGATCTGCGTCCGGATCGGTTTCCAGTGGGACTTCGTCGGTGTCGTCCTCCGATGAGCAGCCAATTGTGCACGACCCCGGTCAATTTGGGGCTTTCAGTGAAAGTGGGCAAATGTGTGCAATTAAAGAAGTCAGGCTTGTTGAAGATCAGTCATTAAAAGAATGTCTTAAGCAACTGAACCAGGAAATAAATTTGCTAAGTCAGCTCTCACATCCAAACATTGTTCGATATCACGGAAGTGAATTGGGTGACGAGGCACTTTCAGTTTATTTGGAGTATGTCTCTGGTGGCTCAATTCATAAATTGCTTCAAGAATATGGTGCCTTTAAGGAACCTGTCATTCAAAATTACACCAGACAGATATTATCTGGTCTTGCCTACTTACATGGCAGAAATACAGTTCATAGAGAGAGTGCGAGGATGATTACATCTTTGCCCGTATCTCCTTGTTCAAGCCCTTTACGACAATATGGACCAGCACACAAGAGCTGTTTTCTTTCTCCTCCTCACCCAACTTATGCCATGATGGGACAGAGCAATTACAATTTGAATGAGTATTCATCATATACAACAAGACCAAACACATCATACACTCTCGAACCTTGGCGGGAATCACCTATGCTTAGACCCCAAACACCGAGTGGATCACCAAGAACAAGACCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

329

Amino Acids

35.68

Weight (kDa)

8.93

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	141 - 243	2e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	142 - 244	4.8e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031521)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0021263.1_g000001
rosa_samantha	Rh2AG288200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	641
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	3 cut(s)	47, 157, 268
AccIII	TCCGGA	1 cut(s)	332
AclWI	GGATC	3 cut(s)	331, 343, 973
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	511
AcyI	GRCGYC	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	962
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	5 cut(s)	464, 632, 665, 774, 871
AjnI	CCWGG	1 cut(s)	501
AleI	CACNNNNGTG	1 cut(s)	558
AluBI	AGCT	3 cut(s)	138, 526, 810
AluI	AGCT	3 cut(s)	138, 526, 810
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	607
Alw44I	GTGCAC	1 cut(s)	389
AlwI	GGATC	3 cut(s)	331, 343, 973
Ama87I	CYCGRG	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	332
AoxI	GGCC	1 cut(s)	269
ApaLI	GTGCAC	1 cut(s)	389
ApeKI	GCWGC	3 cut(s)	262, 286, 379
ApoI	RAATTY	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	794
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	5 cut(s)	82, 581, 821, 927, 960
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	794
BaeGI	GKGCMC	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	249, 273, 391
BccI	CCATC	2 cut(s)	230, 841
BceAI	ACGGC	2 cut(s)	71, 256
BcgI	CGANNNNNNTGC	4 cut(s)	87, 121, 121, 155
BciT130I	CCWGG	1 cut(s)	503
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	607
BfmI	CTRYAG	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	488
Bme1390I	CCNGG	2 cut(s)	399, 503
Bme18I	GGWCC	1 cut(s)	794
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	794
BmiI	GGNNCC	3 cut(s)	247, 643, 654
BmrFI	CCNGG	2 cut(s)	399, 503
BoxI	GACNNNNGTC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BpuMI	CCSGG	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	249, 266, 397, 923
BsaWI	WCCGGW	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	345
BseAI	TCCGGA	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	4 cut(s)	249, 266, 397, 923
BseGI	GGATG	3 cut(s)	256, 532, 747
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	2 cut(s)	813, 816
BseSI	GKGCMC	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	269
BseXI	GCAGC	3 cut(s)	249, 273, 391
Bsh1236I	CGCG	3 cut(s)	47, 157, 268
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	641
BsiEI	CGRYCG	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	4 cut(s)	50, 213, 333, 399
BslFI	GGGAC	4 cut(s)	202, 267, 364, 864
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	4 cut(s)	202, 267, 364, 864
BsnI	GGCC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	150, 393
Bsp13I	TCCGGA	1 cut(s)	332
Bsp143I	GATC	6 cut(s)	114, 304, 323, 335, 466, 965
BspANI	GGCC	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	332
BspFNI	CGCG	3 cut(s)	47, 157, 268
BspLI	GGNNCC	3 cut(s)	247, 643, 654
BspMAI	CTGCAG	1 cut(s)	291
BspPI	GGATC	3 cut(s)	331, 343, 973
BspT107I	GGYRCC	1 cut(s)	641
BspTI	CTTAAG	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	4 cut(s)	249, 266, 397, 923
BssMI	GATC	6 cut(s)	114, 304, 323, 335, 466, 965
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	2 cut(s)	249, 923
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	193, 721
BstACI	GRCGYC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	6, 164
BstDEI	CTNAG	2 cut(s)	518, 944
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	3 cut(s)	256, 532, 747
BstFNI	CGCG	3 cut(s)	47, 157, 268
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	6 cut(s)	117, 307, 326, 338, 469, 968
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	6 cut(s)	114, 304, 323, 335, 466, 965
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 154, 163, 268, 388, 523
BstNI	CCWGG	1 cut(s)	503
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	397, 501
BstSFI	CTRYAG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	3 cut(s)	47, 157, 268
BstV1I	GCAGC	3 cut(s)	249, 273, 391
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	256, 532, 747
BtsIMutI	CAGTG	2 cut(s)	352, 424
Cac8I	GCNNGC	2 cut(s)	6, 164
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	794
Cfr42I	CCGCGG	1 cut(s)	269
CseI	GACGC	2 cut(s)	53, 318
CviAII	CATG	2 cut(s)	707, 844
DdeI	CTNAG	2 cut(s)	518, 944
DpnI	GATC	6 cut(s)	116, 306, 325, 337, 468, 967
DpnII	GATC	6 cut(s)	114, 304, 323, 335, 466, 965
DraIII	CACNNNGTG	1 cut(s)	962
EaeI	YGGCCR	1 cut(s)	269
EagI	CGGCCG	1 cut(s)	269
EclXI	CGGCCG	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	249, 923
Eco24I	GRGCYC	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	794
Eco52I	CGGCCG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	551
EcoT14I	CCWWGG	2 cut(s)	249, 923
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	249, 923
FaeI	CATG	2 cut(s)	710, 847
FalI	AAGNNNNNCTT	4 cut(s)	441, 473, 471, 503
FaqI	GGGAC	4 cut(s)	202, 267, 364, 864
FatI	CATG	2 cut(s)	706, 843
FauI	CCCGC	1 cut(s)	921
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	206
FokI	GGATG	3 cut(s)	243, 519, 754
FriOI	GRGCYC	1 cut(s)	150
GlaI	GCGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	4 cut(s)	50, 213, 333, 399
HgaI	GACGC	2 cut(s)	53, 318
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	710, 847
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	3 cut(s)	171, 230, 932
HpaII	CCGG	4 cut(s)	50, 213, 333, 399
HphI	GGTGA	5 cut(s)	82, 581, 821, 927, 960
Hpy166II	GTNNAC	3 cut(s)	199, 207, 391
Hpy188I	TCNGA	2 cut(s)	235, 373
Hpy188III	TCNNGA	4 cut(s)	118, 333, 632, 917
Hpy8I	GTNNAC	3 cut(s)	199, 207, 391
Hpy99I	CGWCG	5 cut(s)	47, 211, 277, 286, 361
HpyAV	CCTTC	1 cut(s)	12
HpyCH4III	ACNGT	2 cut(s)	193, 721
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	289, 391, 440
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 154, 163, 268, 388, 523
HpyF3I	CTNAG	2 cut(s)	518, 944
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	710, 847
HspAI	GCGC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	304
KspI	CCGCGG	1 cut(s)	269
Kzo9I	GATC	6 cut(s)	114, 304, 323, 335, 466, 965
LmnI	GCTCC	2 cut(s)	135, 251
Lsp1109I	GCAGC	3 cut(s)	249, 273, 391
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	3 cut(s)	57, 88, 569
MalI	GATC	6 cut(s)	116, 306, 325, 337, 468, 967
MboI	GATC	6 cut(s)	114, 304, 323, 335, 466, 965
MboII	GAAGA	1 cut(s)	476
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	150, 393
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	122, 379, 568, 732, 834, 837
MroI	TCCGGA	1 cut(s)	332
MseI	TTAA	4 cut(s)	444, 476, 489, 648
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	2 cut(s)	262, 268
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	4 cut(s)	50, 213, 333, 399
MspR9I	CCNGG	2 cut(s)	399, 503
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	3 cut(s)	47, 157, 268
MwoI	GCNNNNNNNGC	6 cut(s)	92, 154, 163, 268, 388, 523
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	6 cut(s)	114, 304, 323, 335, 466, 965
NlaIII	CATG	2 cut(s)	710, 847
NlaIV	GGNNCC	3 cut(s)	247, 643, 654
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	3 cut(s)	57, 88, 569
OliI	CACNNNNGTG	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	230, 932
PflFI	GACNNNGTC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PshAI	GACNNNNGTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	247, 643, 654
PspPI	GGNCC	1 cut(s)	794
PstI	CTGCAG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	323
PsyI	GACNNNGTC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	558
SacII	CCGCGG	1 cut(s)	269
SalI	GTCGAC	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	444, 476, 489, 648
Sau3AI	GATC	6 cut(s)	114, 304, 323, 335, 466, 965
Sau96I	GGNCC	1 cut(s)	794
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	399, 503
SduI	GDGCHC	2 cut(s)	150, 393
SetI	ASST	7 cut(s)	140, 212, 528, 658, 812, 925, 940
SfcI	CTRYAG	1 cut(s)	287
Sfr303I	CCGCGG	1 cut(s)	269
SgrBI	CCGCGG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	794
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	397, 501
StyI	CCWWGG	2 cut(s)	249, 923
TaaI	ACNGT	2 cut(s)	193, 721
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	5 cut(s)	141, 206, 228, 547, 918
TaqII	GACCGA	1 cut(s)	137
TauI	GCSGC	7 cut(s)	98, 112, 157, 243, 246, 268, 271
TfiI	GAWTC	2 cut(s)	230, 932
Tru1I	TTAA	4 cut(s)	444, 476, 489, 648
Tru9I	TTAA	4 cut(s)	444, 476, 489, 648
TscAI	CASTG	2 cut(s)	352, 424
TseFI	GTSAC	3 cut(s)	57, 88, 569
TseI	GCWGC	3 cut(s)	262, 286, 379
Tsp45I	GTSAC	3 cut(s)	57, 88, 569
TspDTI	ATGAA	3 cut(s)	608, 713, 870
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	2 cut(s)	352, 424
Tth111I	GACNNNGTC	1 cut(s)	355
Vha464I	CTTAAG	1 cut(s)	488
VneI	GTGCAC	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	794
XapI	RAATTY	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	206
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.