Rmu_sc0021332.1_g000006

Belongs to the eukaryotic ribosomal protein eL27 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021332.1
OG0025046
Physical Location & Seq
Reverse (-)
24926 .. 25908
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021332.1_g000006.1.cds

Sequence Viewer

Length: 522 bp
atgataaaccagagacctgagaagcatattagagaccgaaccttcgacccaaacaacgcaggagccaactcacaagtgaagatggagatggccgacgacgatgtcaacggaggtgatacggcaaagagttcgtgcagatccaatcgaggcaacgccatcgatcgtgtgaaggtaagctcacggcgagttcgtgcagattggtggaccagttcaaacaaagtagtgctcctacttcaggggcaattcgccagaaggaaggcggtaattgtgacgaccttcgatgaaggggcacgtgatcggccgtacaggcactacttggtggccgaagtagctaagtactcgagcaaggtgatccggaaggaggtgatgcccacaaagctacagcctcgacgtcgaactcatggaggtggccacgtcgacgcgttgctttcacgcgacaagaaacatggctgccaaggagatcaaagcaagattggaggactggttcaacagtggcaagaaccgatggtttaccaagcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW Ribosomal_L27e

Protein Analysis

173

Amino Acids

19.62

Weight (kDa)

10.14

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025046)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0057761
rosa_multiflora Rmu_sc0021332.1_g000006
rosa_roxburghii Rroxscaffold_1G00022730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AatII GACGTC 1 cut(s) 394
AccI GTMKAC 1 cut(s) 417
AccII CGCG 2 cut(s) 422, 435
AccIII TCCGGA 1 cut(s) 354
AciI CCGC 1 cut(s) 260
AclWI GGATC 2 cut(s) 132, 346
AcoI YGGCCR 4 cut(s) 90, 299, 321, 409
AcuI CTGAAG 1 cut(s) 218
AcvI CACGTG 1 cut(s) 293
AcyI GRCGYC 1 cut(s) 391
AfaI GTAC 2 cut(s) 305, 338
AfiI CCNNNNNNNGG 2 cut(s) 235, 361
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 2 cut(s) 213, 488
AjiI CACGTC 1 cut(s) 415
AloI GAACNNNNNNTCC 2 cut(s) 468, 500
AluBI AGCT 4 cut(s) 177, 332, 379, 518
AluI AGCT 4 cut(s) 177, 332, 379, 518
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 7, 27
AlwI GGATC 2 cut(s) 132, 346
Ama87I CYCGRG 1 cut(s) 340
Aor13HI TCCGGA 1 cut(s) 354
AoxI GGCC 4 cut(s) 90, 299, 321, 409
ApeKI GCWGC 1 cut(s) 450
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 3 cut(s) 125, 361, 376
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 292
BalI TGGCCA 1 cut(s) 411
BbrPI CACGTG 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 437
BccI CCATC 4 cut(s) 76, 82, 164, 499
BceAI ACGGC 3 cut(s) 135, 197, 286
BcgI CGANNNNNNTGC 4 cut(s) 111, 139, 145, 173
BcoDI GTCTC 2 cut(s) 7, 27
BfmI CTRYAG 1 cut(s) 380
BglI GCCNNNNNGGC 1 cut(s) 307
BisI GCNGC 1 cut(s) 451
BlsI GCNGC 1 cut(s) 452
BmcAI AGTACT 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 340
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 64
BmsI GCATC 1 cut(s) 357
Bsa29I ATCGAT 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 391
BsaI GGTCTC 2 cut(s) 7, 27
BsaJI CCNNGG 1 cut(s) 454
BsaWI WCCGGW 1 cut(s) 354
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 361
Bse1I ACTGG 2 cut(s) 207, 486
BseAI TCCGGA 1 cut(s) 354
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 454
BseLI CCNNNNNNNGG 2 cut(s) 235, 361
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 207, 486
BseSI GKGCMC 1 cut(s) 292
BseX3I CGGCCG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 437
BsgI GTGCAG 2 cut(s) 154, 213
Bsh1236I CGCG 2 cut(s) 422, 435
Bsh1285I CGRYCG 2 cut(s) 163, 302
BshFI GGCC 4 cut(s) 92, 301, 323, 411
BshVI ATCGAT 1 cut(s) 159
BsiEI CGRYCG 2 cut(s) 163, 302
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 235, 361
BsmAI GTCTC 2 cut(s) 7, 27
BsnI GGCC 4 cut(s) 92, 301, 323, 411
Bso31I GGTCTC 2 cut(s) 7, 27
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 228, 292
Bsp13I TCCGGA 1 cut(s) 354
Bsp143I GATC 5 cut(s) 137, 160, 295, 351, 460
BspACI CCGC 1 cut(s) 260
BspANI GGCC 4 cut(s) 92, 301, 323, 411
BspCNI CTCAG 1 cut(s) 10
BspDI ATCGAT 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 354
BspFNI CGCG 2 cut(s) 422, 435
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 2 cut(s) 132, 346
BspTNI GGTCTC 2 cut(s) 7, 27
BsrI ACTGG 2 cut(s) 207, 486
BssECI CCNNGG 1 cut(s) 454
BssMI GATC 5 cut(s) 137, 160, 295, 351, 460
BssNI GRCGYC 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 454
Bst4CI ACNGT 1 cut(s) 492
BstACI GRCGYC 1 cut(s) 391
BstBAI YACGTR 1 cut(s) 293
BstDEI CTNAG 3 cut(s) 18, 333, 519
BstENI CCTNNNNNAGG 1 cut(s) 233
BstFNI CGCG 2 cut(s) 422, 435
BstKTI GATC 5 cut(s) 140, 163, 298, 354, 463
BstMAI GTCTC 2 cut(s) 7, 27
BstMBI GATC 5 cut(s) 137, 160, 295, 351, 460
BstMCI CGRYCG 2 cut(s) 163, 302
BstMWI GCNNNNNNNGC 3 cut(s) 307, 329, 376
BstSFI CTRYAG 1 cut(s) 380
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 2 cut(s) 422, 435
BstV1I GCAGC 1 cut(s) 437
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BstZI CGGCCG 1 cut(s) 299
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 4 cut(s) 92, 301, 323, 411
BsuTUI ATCGAT 1 cut(s) 159
BtrI CACGTC 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 497
Cfr13I GGNCC 1 cut(s) 204
ClaI ATCGAT 1 cut(s) 159
CseI GACGC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 304, 337
CviAII CATG 2 cut(s) 401, 446
CviQI GTAC 2 cut(s) 304, 337
DdeI CTNAG 3 cut(s) 18, 333, 519
DpnI GATC 5 cut(s) 139, 162, 297, 353, 462
DpnII GATC 5 cut(s) 137, 160, 295, 351, 460
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 4 cut(s) 90, 299, 321, 409
EagI CGGCCG 1 cut(s) 299
EclXI CGGCCG 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 454
Eco31I GGTCTC 2 cut(s) 7, 27
Eco47I GGWCC 1 cut(s) 204
Eco52I CGGCCG 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 218
Eco72I CACGTG 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 2 cut(s) 404, 449
FaiI YATR 3 cut(s) 27, 402, 447
FatI CATG 2 cut(s) 400, 445
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 451
Fsp4HI GCNGC 1 cut(s) 451
GluI GCNGC 1 cut(s) 451
HaeIII GGCC 4 cut(s) 92, 301, 323, 411
HapII CCGG 1 cut(s) 355
HgaI GACGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 391
Hin1II CATG 2 cut(s) 404, 449
HincII GTYRAC 2 cut(s) 106, 418
HindII GTYRAC 2 cut(s) 106, 418
HindIII AAGCTT 1 cut(s) 516
HpaII CCGG 1 cut(s) 355
HphI GGTGA 3 cut(s) 125, 361, 376
Hpy166II GTNNAC 4 cut(s) 106, 204, 418, 511
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 4 cut(s) 106, 204, 418, 511
Hpy99I CGWCG 6 cut(s) 98, 101, 393, 396, 419, 422
HpyAV CCTTC 7 cut(s) 52, 163, 246, 250, 278, 286, 352
HpyCH4III ACNGT 1 cut(s) 492
HpyCH4IV ACGT 3 cut(s) 292, 391, 414
HpyCH4V TGCA 2 cut(s) 135, 194
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 329, 376
HpyF3I CTNAG 3 cut(s) 18, 333, 519
HpySE526I ACGT 3 cut(s) 292, 391, 414
Hsp92I GRCGYC 1 cut(s) 391
Hsp92II CATG 2 cut(s) 404, 449
Kpn2I TCCGGA 1 cut(s) 354
Kzo9I GATC 5 cut(s) 137, 160, 295, 351, 460
LmnI GCTCC 2 cut(s) 62, 231
LpnPI CCDG 9 cut(s) 23, 30, 45, 220, 221, 262, 292, 368, 467
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 1 cut(s) 357
MaeII ACGT 3 cut(s) 292, 391, 414
MaeIII GTNAC 1 cut(s) 268
MalI GATC 5 cut(s) 139, 162, 297, 353, 462
MboI GATC 5 cut(s) 137, 160, 295, 351, 460
MboII GAAGA 1 cut(s) 91
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 2 cut(s) 228, 292
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 2 cut(s) 242, 264
MluI ACGCGT 1 cut(s) 420
MluNI TGGCCA 1 cut(s) 411
MnlI CCTC 6 cut(s) 104, 140, 355, 396, 398, 470
Mox20I TGGCCA 1 cut(s) 411
MroI TCCGGA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 1 cut(s) 355
MvnI CGCG 2 cut(s) 422, 435
MwoI GCNNNNNNNGC 3 cut(s) 307, 329, 376
NdeII GATC 5 cut(s) 137, 160, 295, 351, 460
NlaIII CATG 2 cut(s) 404, 449
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 268
PaeR7I CTCGAG 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 452
Ple19I CGATCG 1 cut(s) 163
PmaCI CACGTG 1 cut(s) 293
PmlI CACGTG 1 cut(s) 293
Ppu21I YACGTR 1 cut(s) 293
PspCI CACGTG 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 204
PspXI VCTCGAGB 1 cut(s) 340
PsuI RGATCY 1 cut(s) 137
PsyI GACNNNGTC 1 cut(s) 101
PvuI CGATCG 1 cut(s) 163
RsaI GTAC 2 cut(s) 305, 338
RsaNI GTAC 2 cut(s) 304, 337
RseI CAYNNNNRTG 1 cut(s) 405
SalI GTCGAC 1 cut(s) 416
SatI GCNGC 1 cut(s) 451
Sau3AI GATC 5 cut(s) 137, 160, 295, 351, 460
Sau96I GGNCC 1 cut(s) 204
ScaI AGTACT 1 cut(s) 338
SduI GDGCHC 2 cut(s) 228, 292
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 1 cut(s) 380
Sfr274I CTCGAG 1 cut(s) 340
SgrDI CGTCGACG 1 cut(s) 416
SinI GGWCC 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 2 cut(s) 242, 264
SsiI CCGC 1 cut(s) 260
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 492
TaiI ACGT 3 cut(s) 295, 394, 417
TaqI TCGA 8 cut(s) 45, 145, 159, 279, 341, 388, 394, 417
TaqII GACCGA 1 cut(s) 51
TasI AATT 2 cut(s) 242, 264
TatI WGTACW 1 cut(s) 336
TscAI CASTG 1 cut(s) 497
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 450
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 497
Tth111I GACNNNGTC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 204
XagI CCTNNNNNAGG 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 340
XmiI GTMKAC 1 cut(s) 417
ZraI GACGTC 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.