Rroxscaffold_1G00022730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0025046
Physical Location & Seq
Forward (+)
28103013 .. 28106886
3874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022730.1

Sequence Viewer

Length: 369 bp
ATGACGGCCTTACGGGCTCGCTTGGTGGCCAAAGTAGCCAAGTACCCGAGCAAGGTGATCAGAAAGGAGGTAATGCCCACGACGCTACAGCCTCGACGTCAACCTCAAGGAGGTGGCCACGTTGACGAGTTGCTTTCACGGGACAAGAAACACGACCGCCAAGGAGATCAAGGCCAGATTCAACGGTGGCAAGAACCGGGTTGGGCACGATCCCGGATCGGTACTGCATTTACAGGATTGGGACCAAGACCGGCAGAGCAACTTCAAGCGTGTCTTGAACATGTAGAGTACAGGGGCCGGCCTAAACCTGGATTTAGTCATTACGGACCAGTTTCTCGGGCTTTCGGTTCTGGCGAGGCTTTGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.68

Weight (kDa)

10.69

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025046)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0057761
rosa_multiflora Rmu_sc0021332.1_g000006
rosa_roxburghii Rroxscaffold_1G00022730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 100
AciI CCGC 2 cut(s) 157, 364
AclWI GGATC 2 cut(s) 204, 224
AcoI YGGCCR 2 cut(s) 27, 115
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 3 cut(s) 44, 223, 290
AfiI CCNNNNNNNGG 3 cut(s) 52, 110, 308
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 3 cut(s) 182, 266, 278
AjnI CCWGG 1 cut(s) 307
AlwI GGATC 2 cut(s) 204, 224
Ama87I CYCGRG 2 cut(s) 46, 336
AoxI GGCC 6 cut(s) 6, 27, 115, 172, 295, 299
AspS9I GGNCC 3 cut(s) 242, 295, 326
AsuC2I CCSGG 2 cut(s) 198, 214
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 2 cut(s) 46, 336
AvaII GGWCC 2 cut(s) 242, 326
BaeGI GKGCMC 1 cut(s) 208
BalI TGGCCA 2 cut(s) 29, 117
BanII GRGCYC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 2 cut(s) 198, 214
BfmI CTRYAG 1 cut(s) 86
BglI GCCNNNNNGGC 1 cut(s) 14
Bme1390I CCNGG 3 cut(s) 198, 214, 309
Bme18I GGWCC 2 cut(s) 242, 326
BmeT110I CYCGRG 2 cut(s) 46, 336
BmgT120I GGNCC 3 cut(s) 242, 295, 326
BmiI GGNNCC 2 cut(s) 243, 296
BmrFI CCNGG 3 cut(s) 198, 214, 309
BpuEI CTTGAG 1 cut(s) 90
BpuMI CCSGG 2 cut(s) 198, 214
BsaHI GRCGYC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 110, 308
Bse118I RCCGGY 2 cut(s) 250, 297
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 3 cut(s) 52, 110, 308
BseNI ACTGG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 6 cut(s) 8, 29, 117, 174, 297, 301
BsiEI CGRYCG 1 cut(s) 157
BsiHKCI CYCGRG 2 cut(s) 46, 336
BsiSI CCGG 4 cut(s) 197, 214, 251, 298
BslFI GGGAC 2 cut(s) 155, 255
BslI CCNNNNNNNGG 3 cut(s) 52, 110, 308
BsmFI GGGAC 2 cut(s) 155, 255
BsnI GGCC 6 cut(s) 8, 29, 117, 174, 297, 301
BsoBI CYCGRG 2 cut(s) 46, 336
Bsp1286I GDGCHC 2 cut(s) 19, 208
Bsp143I GATC 4 cut(s) 57, 166, 209, 216
BspACI CCGC 2 cut(s) 157, 364
BspANI GGCC 6 cut(s) 8, 29, 117, 174, 297, 301
BspLI GGNNCC 2 cut(s) 243, 296
BspPI GGATC 2 cut(s) 204, 224
BsrFI RCCGGY 2 cut(s) 250, 297
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 2 cut(s) 250, 297
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 4 cut(s) 57, 166, 209, 216
BssNI GRCGYC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 19, 299
BstENI CCTNNNNNAGG 1 cut(s) 108
BstKTI GATC 4 cut(s) 60, 169, 212, 219
BstMBI GATC 4 cut(s) 57, 166, 209, 216
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 3 cut(s) 14, 35, 82
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 3 cut(s) 196, 212, 307
BstSFI CTRYAG 1 cut(s) 86
BstSLI GKGCMC 1 cut(s) 208
BsuRI GGCC 6 cut(s) 8, 29, 117, 174, 297, 301
Cac8I GCNNGC 2 cut(s) 19, 299
Cfr10I RCCGGY 2 cut(s) 250, 297
Cfr13I GGNCC 3 cut(s) 242, 295, 326
CseI GACGC 1 cut(s) 91
Csp6I GTAC 3 cut(s) 43, 222, 289
CviAII CATG 1 cut(s) 281
CviQI GTAC 3 cut(s) 43, 222, 289
DpnI GATC 4 cut(s) 59, 168, 211, 218
DpnII GATC 4 cut(s) 57, 166, 209, 216
EaeI YGGCCR 2 cut(s) 27, 115
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 242, 326
Eco88I CYCGRG 2 cut(s) 46, 336
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 284
FaiI YATR 1 cut(s) 282
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 2 cut(s) 155, 255
FatI CATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 19
FseI GGCCGGCC 1 cut(s) 301
HaeIII GGCC 6 cut(s) 8, 29, 117, 174, 297, 301
HapII CCGG 4 cut(s) 197, 214, 251, 298
HgaI GACGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 1 cut(s) 284
HincII GTYRAC 2 cut(s) 101, 124
HindII GTYRAC 2 cut(s) 101, 124
HinfI GANTC 1 cut(s) 178
HpaII CCGG 4 cut(s) 197, 214, 251, 298
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 101, 124
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 2 cut(s) 101, 124
Hpy99I CGWCG 2 cut(s) 85, 99
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 2 cut(s) 97, 120
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 35, 82
HpySE526I ACGT 2 cut(s) 97, 120
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 1 cut(s) 284
KroI GCCGGC 1 cut(s) 297
KroNI GCCGGC 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 4 cut(s) 57, 166, 209, 216
MaeII ACGT 2 cut(s) 97, 120
MalI GATC 4 cut(s) 59, 168, 211, 218
MboI GATC 4 cut(s) 57, 166, 209, 216
MhlI GDGCHC 2 cut(s) 19, 208
MlsI TGGCCA 2 cut(s) 29, 117
MluNI TGGCCA 2 cut(s) 29, 117
MnlI CCTC 5 cut(s) 61, 102, 104, 114, 349
Mox20I TGGCCA 2 cut(s) 29, 117
MroNI GCCGGC 1 cut(s) 297
MscI TGGCCA 2 cut(s) 29, 117
Msp20I TGGCCA 2 cut(s) 29, 117
MspI CCGG 4 cut(s) 197, 214, 251, 298
MspR9I CCNGG 3 cut(s) 198, 214, 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 14, 35, 82
NaeI GCCGGC 1 cut(s) 299
NciI CCSGG 2 cut(s) 198, 214
NdeII GATC 4 cut(s) 57, 166, 209, 216
NgoMIV GCCGGC 1 cut(s) 297
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 2 cut(s) 243, 296
NspI RCATGY 1 cut(s) 284
PciI ACATGT 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdiI GCCGGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 212
PscI ACATGT 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 243, 296
PspPI GGNCC 3 cut(s) 242, 295, 326
RigI GGCCGGCC 1 cut(s) 301
RsaI GTAC 3 cut(s) 44, 223, 290
RsaNI GTAC 3 cut(s) 43, 222, 289
Sau3AI GATC 4 cut(s) 57, 166, 209, 216
Sau96I GGNCC 3 cut(s) 242, 295, 326
ScrFI CCNGG 3 cut(s) 198, 214, 309
SduI GDGCHC 2 cut(s) 19, 208
SetI ASST 7 cut(s) 57, 72, 100, 106, 115, 123, 310
SfcI CTRYAG 1 cut(s) 86
SinI GGWCC 2 cut(s) 242, 326
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
SsiI CCGC 2 cut(s) 157, 364
StyD4I CCNGG 3 cut(s) 196, 212, 307
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 2 cut(s) 100, 123
TaqI TCGA 1 cut(s) 94
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 339
VpaK11BI GGWCC 2 cut(s) 242, 326
XagI CCTNNNNNAGG 1 cut(s) 108
XceI RCATGY 1 cut(s) 284
ZraI GACGTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.