Rmu_sc0021666.1_g000002

At4g28440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021666.1
OG0021403
Physical Location & Seq
Forward (+)
6632 .. 8918
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021666.1_g000002.1.cds

Sequence Viewer

Length: 474 bp
atggcagctccgaaagtggagctcgaatctgattgtaccagatcaagctactgtctctctctctctgccatggctggtaccagatcgactggccaatccacgacgttcacagacggtcgagctcagccaaccggcggcggaggagtggctagtgacgaaggagatcgtcggcaacggaagctctggcgaatcccgctgccgcttaatcaaatccgaaatcccgctgctgtggacttgatgaaagagggttcgactctaaccctgcgaaatgccgagcgaaatgccgaaatttacatgttcaaaggaacaatgaggcttgctgtgggcgaaagtggcagtgttgaagtggccgagcccgccagttttaccgtgggggaagataacctctcactccttgattttaaacgtccacttcttggattgattaaatttttgggaattatgagatgtcttagggaaatgaaaggtctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.06

Weight (kDa)

8.9

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021403)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0443301
rosa_multiflora Rmu_sc0021666.1_g000002 Rmu_ssc0000122.1_g000005
rosa_samantha Rh4CG427300 Rh4DG407300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 416
AciI CCGC 6 cut(s) 135, 138, 194, 200, 222, 357
AcoI YGGCCR 2 cut(s) 91, 348
AcsI RAATTY 2 cut(s) 288, 428
AfaI GTAC 2 cut(s) 37, 79
AfiI CCNNNNNNNGG 2 cut(s) 134, 416
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 2 cut(s) 301, 344
AluBI AGCT 5 cut(s) 8, 22, 48, 122, 181
AluI AGCT 5 cut(s) 8, 22, 48, 122, 181
Alw21I GWGCWC 2 cut(s) 24, 124
Alw26I GTCTC 1 cut(s) 59
AoxI GGCC 2 cut(s) 91, 348
ApeKI GCWGC 3 cut(s) 5, 196, 224
ApoI RAATTY 2 cut(s) 288, 428
Asp718I GGTACC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 93
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 3 cut(s) 24, 124, 357
Bbv12I GWGCWC 2 cut(s) 24, 124
BbvI GCAGC 3 cut(s) 17, 183, 211
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 1 cut(s) 150
BisI GCNGC 5 cut(s) 6, 136, 197, 200, 225
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 5 cut(s) 7, 137, 198, 201, 226
BmiI GGNNCC 1 cut(s) 79
Bpu1102I GCTNAGC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 69, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 416
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 94, 360
BseDI CCNNGG 2 cut(s) 69, 369
BseLI CCNNNNNNNGG 2 cut(s) 134, 416
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 2 cut(s) 94, 360
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 3 cut(s) 17, 183, 211
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 2 cut(s) 93, 350
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 24, 124
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 134, 416
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 2 cut(s) 93, 350
Bsp1286I GDGCHC 3 cut(s) 24, 124, 357
Bsp143I GATC 3 cut(s) 41, 83, 163
Bsp1720I GCTNAGC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 6 cut(s) 135, 138, 194, 200, 222, 357
BspANI GGCC 2 cut(s) 93, 350
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 2 cut(s) 94, 360
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 69, 369
BssMI GATC 3 cut(s) 41, 83, 163
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 3 cut(s) 53, 116, 370
BstC8I GCNNGC 2 cut(s) 318, 357
BstDEI CTNAG 2 cut(s) 123, 452
BstDSI CCRYGG 2 cut(s) 69, 369
BstKTI GATC 3 cut(s) 44, 86, 166
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 41, 83, 163
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 4 cut(s) 178, 193, 333, 356
BstNSI RCATGY 1 cut(s) 298
BstV1I GCAGC 3 cut(s) 17, 183, 211
BsuRI GGCC 2 cut(s) 93, 350
BtgI CCRYGG 2 cut(s) 69, 369
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 318, 357
Cfr10I RCCGGY 1 cut(s) 131
Csp6I GTAC 2 cut(s) 36, 78
CviAII CATG 2 cut(s) 70, 295
CviQI GTAC 2 cut(s) 36, 78
DdeI CTNAG 2 cut(s) 123, 452
DpnI GATC 3 cut(s) 43, 85, 165
DpnII GATC 3 cut(s) 41, 83, 163
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 2 cut(s) 91, 348
EciI GGCGGA 1 cut(s) 153
Ecl136II GAGCTC 2 cut(s) 22, 122
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 3 cut(s) 24, 124, 357
Eco53kI GAGCTC 2 cut(s) 22, 122
EcoICRI GAGCTC 2 cut(s) 22, 122
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 3 cut(s) 24, 124, 357
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 73, 298
FaiI YATR 3 cut(s) 71, 296, 443
FatI CATG 2 cut(s) 69, 294
FauI CCCGC 3 cut(s) 201, 229, 364
Fnu4HI GCNGC 5 cut(s) 6, 136, 197, 200, 225
FriOI GRGCYC 3 cut(s) 24, 124, 357
Fsp4HI GCNGC 5 cut(s) 6, 136, 197, 200, 225
FspBI CTAG 1 cut(s) 150
GluI GCNGC 5 cut(s) 6, 136, 197, 200, 225
HaeIII GGCC 2 cut(s) 93, 350
HapII CCGG 1 cut(s) 132
Hin1II CATG 2 cut(s) 73, 298
HinfI GANTC 3 cut(s) 26, 189, 253
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 3 cut(s) 108, 232, 410
Hpy188I TCNGA 3 cut(s) 12, 31, 215
Hpy8I GTNNAC 3 cut(s) 108, 232, 410
Hpy99I CGWCG 2 cut(s) 106, 171
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 53, 116, 370
HpyCH4IV ACGT 2 cut(s) 104, 406
HpyF10VI GCNNNNNNNGC 4 cut(s) 178, 193, 333, 356
HpyF3I CTNAG 2 cut(s) 123, 452
HpySE526I ACGT 2 cut(s) 104, 406
Hsp92II CATG 2 cut(s) 73, 298
KpnI GGTACC 1 cut(s) 81
Kzo9I GATC 3 cut(s) 41, 83, 163
LmnI GCTCC 2 cut(s) 13, 19
LpnPI CCDG 8 cut(s) 52, 60, 75, 94, 145, 169, 275, 373
Lsp1109I GCAGC 3 cut(s) 17, 183, 211
MaeI CTAG 1 cut(s) 150
MaeII ACGT 2 cut(s) 104, 406
MaeIII GTNAC 1 cut(s) 152
MalI GATC 3 cut(s) 43, 85, 165
MboI GATC 3 cut(s) 41, 83, 163
MboII GAAGA 1 cut(s) 389
MhlI GDGCHC 3 cut(s) 24, 124, 357
MlsI TGGCCA 1 cut(s) 93
MluCI AATT 3 cut(s) 288, 428, 438
MluNI TGGCCA 1 cut(s) 93
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 4 cut(s) 134, 238, 306, 395
Mox20I TGGCCA 1 cut(s) 93
MscI TGGCCA 1 cut(s) 93
MseI TTAA 3 cut(s) 204, 402, 426
Msp20I TGGCCA 1 cut(s) 93
MspA1I CMGCKG 2 cut(s) 196, 224
MspI CCGG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 178, 193, 333, 356
NcoI CCATGG 1 cut(s) 69
NdeII GATC 3 cut(s) 41, 83, 163
NlaIII CATG 2 cut(s) 73, 298
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 2 cut(s) 298, 376
NmuCI GTSAC 1 cut(s) 152
NspI RCATGY 1 cut(s) 298
PciI ACATGT 1 cut(s) 294
PfeI GAWTC 2 cut(s) 26, 189
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 5 cut(s) 7, 137, 198, 201, 226
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PscI ACATGT 1 cut(s) 294
Psp124BI GAGCTC 2 cut(s) 24, 124
PspN4I GGNNCC 1 cut(s) 79
RsaI GTAC 2 cut(s) 37, 79
RsaNI GTAC 2 cut(s) 36, 78
SacI GAGCTC 2 cut(s) 24, 124
SaqAI TTAA 3 cut(s) 204, 402, 426
SatI GCNGC 5 cut(s) 6, 136, 197, 200, 225
Sau3AI GATC 3 cut(s) 41, 83, 163
SchI GAGTC 1 cut(s) 247
SduI GDGCHC 3 cut(s) 24, 124, 357
SetI ASST 9 cut(s) 10, 24, 50, 107, 124, 183, 387, 409, 469
Sse9I AATT 3 cut(s) 288, 428, 438
SsiI CCGC 6 cut(s) 135, 138, 194, 200, 222, 357
SspMI CTAG 1 cut(s) 150
SstI GAGCTC 2 cut(s) 24, 124
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 3 cut(s) 53, 116, 370
TaiI ACGT 2 cut(s) 107, 409
TaqI TCGA 4 cut(s) 24, 86, 118, 251
TasI AATT 3 cut(s) 288, 428, 438
TauI GCSGC 2 cut(s) 138, 202
TfiI GAWTC 2 cut(s) 26, 189
Tru1I TTAA 3 cut(s) 204, 402, 426
Tru9I TTAA 3 cut(s) 204, 402, 426
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 3 cut(s) 5, 196, 224
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 1 cut(s) 343
Van91I CCANNNNNTGG 1 cut(s) 416
XapI RAATTY 2 cut(s) 288, 428
XceI RCATGY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.