Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022228.1

Orthogroup ID

OG0025585

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1896

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022228.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

aatgcagcttgtgtcttggttcctggcggatttggtgatcgtggtgtaagaggtatgatcttggctgcaaaatatgccagagaaaacaatgttccttatcttgggatatgtttggggatgcagatatctgtgattgagtttgctagagctgttttgggtctggaaagggcagacagcaccgagtttgatgcacaaacacccaatcctgttgtaattttcatgcctgagggttcaagaacacatatgggaagcacaatgagattaggatcgagaagaacacttttccaaactcctgattgcattacttcaaaactgtaccataactcaaagtatgttgatgaacggcatcggcatagatatgaggtaaacccagatgtcattggaattcttgaagaagctggcctaaaatttgtagggaaggatgacagcggaagaagaatggagattttagagcttccaagtcatccattctatataggagtgcaatttcatccagaatttaaatcaaggcctaggaggccctcagctctttttctaggtcttatcttggcagcaacagggcagttggaaacgtatcttagtgggaatcaaagcaatagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

200

Amino Acids

22.24

Weight (kDa)

8.49

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025585)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004581.1_g000001 Rmu_sc0022228.1_g000001
rosa_samantha	Rh7DG488100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	27, 429
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	3 cut(s)	384, 407, 497
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	234, 309, 392
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	8, 149, 398, 454, 527
AluI	AGCT	5 cut(s)	8, 149, 398, 454, 527
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	3 cut(s)	400, 509, 518
ApeKI	GCWGC	3 cut(s)	5, 65, 551
ApoI	RAATTY	3 cut(s)	384, 407, 497
AspA2I	CCTAGG	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	519
AsuHPI	GGTGA	1 cut(s)	47
AvrII	CCTAGG	1 cut(s)	512
AxyI	CCTNAGG	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	17, 52, 563
BceAI	ACGGC	1 cut(s)	359
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	24
BfaI	CTAG	3 cut(s)	144, 513, 536
BglI	GCCNNNNNGGC	1 cut(s)	517
BisI	GCNGC	3 cut(s)	6, 66, 552
BlnI	CCTAGG	1 cut(s)	512
BlsI	GCNGC	3 cut(s)	7, 67, 553
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	519
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	3 cut(s)	108, 178, 355
Bpu10I	CCTNAGC	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse21I	CCTNAGG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	4 cut(s)	123, 427, 463, 490
BseJI	GATNNNNATC	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	216, 537
BseXI	GCAGC	3 cut(s)	17, 52, 563
BshFI	GGCC	3 cut(s)	402, 511, 520
BslI	CCNNNNNNNGG	1 cut(s)	101
BsnI	GGCC	3 cut(s)	402, 511, 520
Bsp143I	GATC	3 cut(s)	37, 57, 266
BspACI	CCGC	2 cut(s)	27, 429
BspANI	GGCC	3 cut(s)	402, 511, 520
BspCNI	CTCAG	2 cut(s)	217, 536
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	3 cut(s)	37, 57, 266
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	3 cut(s)	225, 523, 578
BstF5I	GGATG	4 cut(s)	123, 427, 463, 490
BstKTI	GATC	3 cut(s)	40, 60, 269
BstMBI	GATC	3 cut(s)	37, 57, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 517
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	17, 52, 563
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	402, 511, 520
BtsCI	GGATG	4 cut(s)	123, 427, 463, 490
Cac8I	GCNNGC	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	9 cut(s)	8, 65, 149, 398, 402, 454, 511, 520, 527
CviKI_1	RGCY	9 cut(s)	8, 65, 149, 398, 402, 454, 511, 520, 527
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	225, 523, 578
DpnI	GATC	3 cut(s)	39, 59, 268
DpnII	GATC	3 cut(s)	37, 57, 266
DraI	TTTAAA	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	512
Eco147I	AGGCCT	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	1 cut(s)	223
FatI	CATG	1 cut(s)	219
FauNDI	CATATG	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	6, 66, 552
FokI	GGATG	4 cut(s)	130, 434, 450, 477
Fsp4HI	GCNGC	3 cut(s)	6, 66, 552
FspBI	CTAG	3 cut(s)	144, 513, 536
GluI	GCNGC	3 cut(s)	6, 66, 552
HaeIII	GGCC	3 cut(s)	402, 511, 520
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	1 cut(s)	586
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188III	TCNNGA	6 cut(s)	161, 234, 270, 293, 389, 494
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	6 cut(s)	5, 68, 121, 191, 300, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 517
HpyF3I	CTNAG	3 cut(s)	225, 523, 578
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	37, 57, 266
Lsp1109I	GCAGC	3 cut(s)	17, 52, 563
LweI	GCATC	3 cut(s)	108, 178, 355
MaeI	CTAG	3 cut(s)	144, 513, 536
MaeII	ACGT	1 cut(s)	572
MalI	GATC	3 cut(s)	39, 59, 268
MboI	GATC	3 cut(s)	37, 57, 266
MboII	GAAGA	4 cut(s)	285, 404, 444, 447
MluCI	AATT	5 cut(s)	213, 384, 407, 485, 497
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	5 cut(s)	44, 220, 355, 510, 532
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	74, 517
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	3 cut(s)	37, 57, 266
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	586
PkrI	GCNGC	3 cut(s)	7, 67, 553
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	519
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	3 cut(s)	6, 66, 552
Sau3AI	GATC	3 cut(s)	37, 57, 266
Sau96I	GGNCC	1 cut(s)	519
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	9 cut(s)	10, 55, 151, 366, 400, 456, 529, 541, 575
SfaNI	GCATC	3 cut(s)	108, 178, 355
SfiI	GGCCNNNNNGGCC	1 cut(s)	517
SmiI	ATTTAAAT	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	5 cut(s)	213, 384, 407, 485, 497
SseBI	AGGCCT	1 cut(s)	511
SsiI	CCGC	2 cut(s)	27, 429
SspMI	CTAG	3 cut(s)	144, 513, 536
StuI	AGGCCT	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	512
SwaI	ATTTAAAT	1 cut(s)	502
TaaI	ACNGT	1 cut(s)	315
TaiI	ACGT	1 cut(s)	575
TaqI	TCGA	1 cut(s)	269
TasI	AATT	5 cut(s)	213, 384, 407, 485, 497
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseI	GCWGC	3 cut(s)	5, 65, 551
TspDTI	ATGAA	3 cut(s)	208, 354, 479
XapI	RAATTY	3 cut(s)	384, 407, 497
XmaJI	CCTAGG	1 cut(s)	512
XspI	CTAG	3 cut(s)	144, 513, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.