Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0025585

Physical Location & Seq

Genomic Coordinates Forward (+)

69295728 .. 69299004

Gene Structure 3277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG488100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACACACTGCTGTCAGAACCAAAATGCTCATCGGTCGATTCTTCAACAACTTAATTTACTAAGCATTGCTACACCTCCTGATTTGAGAGATTGGACCAAGATGGCAGAGACTTATGATAATCTCACCAATTCTGTCAGGATAGCCATGGTGGGAAAGTATGTTGGCCTCACAGATTCATATCTGTCTGTAGTGAAGGCCCTTTTGCATGCTTGCATTGCATGTTCTCTAAAGCCAGAAATTGACTGGATTGCTGCTTCGGACCTTGAAGATGATAGTGCTAAACTGACACCAGAAGCACATGCTGCTGCGTGGGAGACTTTAAGGAATGCAGCTTGTGTCTTGGTTCCTGGTGGATTTGGTGATCGTGGTGTTCGAGGTATGATCTTGGCTGCAAAATATGCCAGAGAAAACAATGTTCCTTATCTTGGGATATGTTTGGGGATGCAGATATCTGTGATTGAGTTTGCTAGAGCTGTTTTGGGTCTGGAAAGGGCAGACAGCACCGAGTTTGATGCACAAACACCCAATCCTGTTGTAATTTTCATGCCTGAGGGTTCAAGAACACATATGGGAAGCACAATGAGATTAGGATCGAGAAGAACACTTTTCCAAACTCCTGATTGCATTACTTCAAAACTGTACCATAACTCAAAGTATGTTGATGAACGGCATCGGCATAGATATGAGGTAAACCCAGATGTCATTGGAATTCTTGAAGAAGCTGGCCTAAAATTTGTAGGGAAGGATGACAGCGGAAGAAGAATGGAGGTGGGTTCTAATCTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

263

Amino Acids

29.11

Weight (kDa)

6.24

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase	PF00117	57 - 258	1.8e-28	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025585)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004581.1_g000001 Rmu_sc0022228.1_g000001
rosa_samantha	Rh7DG488100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	756
AclWI	GGATC	1 cut(s)	601
AcsI	RAATTY	2 cut(s)	711, 734
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	5 cut(s)	47, 269, 561, 636, 719
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	3 cut(s)	335, 476, 725
AluI	AGCT	3 cut(s)	335, 476, 725
Alw26I	GTCTC	2 cut(s)	104, 311
AlwI	GGATC	1 cut(s)	601
AoxI	GGCC	3 cut(s)	166, 198, 727
ApeKI	GCWGC	5 cut(s)	254, 305, 308, 332, 392
ApoI	RAATTY	2 cut(s)	711, 734
AspS9I	GGNCC	3 cut(s)	96, 199, 262
AsuHPI	GGTGA	2 cut(s)	118, 374
AvaII	GGWCC	2 cut(s)	96, 262
AxyI	CCTNAGG	1 cut(s)	552
BbvI	GCAGC	5 cut(s)	241, 292, 295, 344, 379
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	686
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	104, 311
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	5 cut(s)	255, 306, 309, 333, 393
BlsI	GCNGC	5 cut(s)	256, 307, 310, 334, 394
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	2 cut(s)	96, 262
BmgT120I	GGNCC	3 cut(s)	96, 199, 262
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	3 cut(s)	435, 505, 682
BsaBI	GATNNNNATC	2 cut(s)	180, 592
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	251
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	2 cut(s)	66, 216
Bse8I	GATNNNNATC	2 cut(s)	180, 592
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	450, 754
BseJI	GATNNNNATC	2 cut(s)	180, 592
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	2 cut(s)	66, 216
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	251
BseXI	GCAGC	5 cut(s)	241, 292, 295, 344, 379
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	3 cut(s)	168, 200, 729
BsiEI	CGRYCG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	104, 311
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	168, 200, 729
Bsp143I	GATC	3 cut(s)	364, 384, 593
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	3 cut(s)	168, 200, 729
BspCNI	CTCAG	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	601
BsrDI	GCAATG	2 cut(s)	66, 216
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	3 cut(s)	364, 384, 593
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	642
BstAPI	GCANNNNNTGC	2 cut(s)	305, 401
BstC8I	GCNNGC	3 cut(s)	210, 214, 727
BstDEI	CTNAG	2 cut(s)	62, 552
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	450, 754
BstKTI	GATC	3 cut(s)	367, 387, 596
BstMAI	GTCTC	2 cut(s)	104, 311
BstMBI	GATC	3 cut(s)	364, 384, 593
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 305, 401
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	3 cut(s)	212, 225, 305
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	5 cut(s)	241, 292, 295, 344, 379
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	3 cut(s)	168, 200, 729
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	450, 754
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	3 cut(s)	210, 214, 727
Cfr13I	GGNCC	3 cut(s)	96, 199, 262
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	5 cut(s)	148, 209, 222, 302, 547
CviJI	RGCY	9 cut(s)	146, 168, 200, 235, 335, 392, 476, 725, 729
CviKI_1	RGCY	9 cut(s)	146, 168, 200, 235, 335, 392, 476, 725, 729
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	62, 552
DpnI	GATC	3 cut(s)	366, 386, 595
DpnII	GATC	3 cut(s)	364, 384, 593
Eco130I	CCWWGG	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	96, 262
Eco81I	CCTNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	711
EcoRII	CCWGG	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	5 cut(s)	151, 212, 225, 305, 550
FatI	CATG	5 cut(s)	147, 208, 221, 301, 546
FauNDI	CATATG	1 cut(s)	570
Fnu4HI	GCNGC	5 cut(s)	255, 306, 309, 333, 393
FokI	GGATG	2 cut(s)	457, 761
Fsp4HI	GCNGC	5 cut(s)	255, 306, 309, 333, 393
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	5 cut(s)	255, 306, 309, 333, 393
HaeIII	GGCC	3 cut(s)	168, 200, 729
Hin1II	CATG	5 cut(s)	151, 212, 225, 305, 550
HinfI	GANTC	2 cut(s)	40, 176
HphI	GGTGA	2 cut(s)	118, 374
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	3 cut(s)	18, 262, 791
Hpy188III	TCNNGA	7 cut(s)	80, 139, 488, 561, 597, 620, 716
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	2 cut(s)	190, 739
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4V	TGCA	8 cut(s)	208, 216, 221, 332, 395, 448, 518, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 305, 401
HpyF3I	CTNAG	2 cut(s)	62, 552
Hsp92II	CATG	5 cut(s)	151, 212, 225, 305, 550
Kzo9I	GATC	3 cut(s)	364, 384, 593
Lsp1109I	GCAGC	5 cut(s)	241, 292, 295, 344, 379
LweI	GCATC	3 cut(s)	435, 505, 682
MaeI	CTAG	1 cut(s)	471
MalI	GATC	3 cut(s)	366, 386, 595
MboI	GATC	3 cut(s)	364, 384, 593
MboII	GAAGA	6 cut(s)	35, 281, 612, 731, 771, 774
MluCI	AATT	6 cut(s)	55, 130, 240, 540, 711, 734
MnlI	CCTC	6 cut(s)	87, 179, 371, 547, 682, 763
MseI	TTAA	2 cut(s)	54, 323
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	756
MspR9I	CCNGG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	3 cut(s)	218, 305, 401
NcoI	CCATGG	1 cut(s)	147
NdeI	CATATG	1 cut(s)	570
NdeII	GATC	3 cut(s)	364, 384, 593
NlaIII	CATG	5 cut(s)	151, 212, 225, 305, 550
NlaIV	GGNNCC	1 cut(s)	348
NspI	RCATGY	3 cut(s)	212, 225, 305
PaeI	GCATGC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	40, 176
PkrI	GCNGC	5 cut(s)	256, 307, 310, 334, 394
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	3 cut(s)	96, 199, 262
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	2 cut(s)	54, 323
SatI	GCNGC	5 cut(s)	255, 306, 309, 333, 393
Sau3AI	GATC	3 cut(s)	364, 384, 593
Sau96I	GGNCC	3 cut(s)	96, 199, 262
ScrFI	CCNGG	1 cut(s)	351
SetI	ASST	8 cut(s)	79, 267, 337, 382, 478, 693, 727, 774
SfaNI	GCATC	3 cut(s)	435, 505, 682
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	96, 262
SmiMI	CAYNNNNRTG	1 cut(s)	684
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	6 cut(s)	55, 130, 240, 540, 711, 734
SsiI	CCGC	1 cut(s)	756
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	642
TaqI	TCGA	3 cut(s)	38, 376, 596
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	6 cut(s)	55, 130, 240, 540, 711, 734
TfiI	GAWTC	2 cut(s)	40, 176
Tru1I	TTAA	2 cut(s)	54, 323
Tru9I	TTAA	2 cut(s)	54, 323
TscAI	CASTG	1 cut(s)	14
TseI	GCWGC	5 cut(s)	254, 305, 308, 332, 392
TspDTI	ATGAA	3 cut(s)	168, 535, 681
TspRI	CASTG	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	96, 262
XapI	RAATTY	2 cut(s)	711, 734
XceI	RCATGY	3 cut(s)	212, 225, 305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	243
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.