Rmu_sc0022657.1_g000001

PPR repeat

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022657.1
Physical Location & Seq
Reverse (-)
801 .. 2315
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022657.1_g000001.1.cds

Sequence Viewer

Length: 1515 bp
atggcgcacatcaagcaagttcaatcccatctcgcagtttcgggcacccttttcgatccttacgcagcagccaagatcattgccttctgcaccgtctctgatgatctacgccacgcttatcaactcttccgtttcatgcctagtcgaaacacttacatttggaatgtcatgatcagaggctttaccgacagaaatgaatccataagcgccttgtctctctacactgatatgcttcgaagcggtttcttgcctgataactacacattctcttttgttctgcgagcttgtgctgagctctccagtgtttcttttggtgtggtgctccatgcccatgccattaggttgggttgggagtcttatgattttgtgcagaatggcttgatccatttgtatgtgacgtgtgactttataaacccagctcgtaaactgtttgatatgagtgtgtataaagatgtggtcacctggactgcattggttaatgggtatgttaggtctggccagatgttgatcgcacgccaactgttcgatgaaatgcctgagaaaaatgcggtttcttggagtgctatgattaacgggtatgtgcatttggggttgtttagagaggccttggagctttttgctgatatgcaggctgctggtgtttctcctaaccatgctgggattgtaggggcgctcactgcctgcgcttttgttggtgcattggatcagggaaggtggatacatgcctatgtcaacaggaagaggatgatattagatacagtgttgggcactgctcttgttgacatgtacacaaagtgtggttgtgttgaaactgcttgcgctttgtttgatgagatgccgaagagggatgtgtttgcttttacttctttgatatcaggtcttgctaataatggagagagtgcaagtgccatttcgttgtttgcaagaatgaagaatgagggaattgcgcctaatgaagttacatttgtatgtgtcttgagtgcttgcagtcgagtggggatggtggatgagggattgcaaatcttcagaagtatgaacaatagtttcgggatacagccaggggtccagcattatggttgtttggtggatttactggggagagctgggatgctagaggaggcaaagaagattgtgacagagatgccagtggaaccagactcgtacgtcttgggtgcattgctcaatgcttgtagagttcatggagaccttgatttgggaaaagaaatggtagagcacttcactgggcaaagattagaccacagtggtgtgcatgttcttctttcaaacatttatgcctctgaaaaccagtgggacgatgtcacactcttaaggaagggaatggaggagaaaagggtgagaaaggttcccggatgtagcttaattgaagtcaatggcgaggtttatgagtttaccgctggagacaggtcgcatgtgctcatgcaggaaatcatgttgttgtcatttgaaactgccaatcatttaaagtctttttggtttgatggtgatgaaggctaa

Protein Analysis

504

Amino Acids

56.07

Weight (kDa)

5.59

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015582)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AasI GACNNNNNNGTC 1 cut(s) 1163
AccB1I GGYRCC 1 cut(s) 44
AciI CCGC 3 cut(s) 240, 548, 1413
AclWI GGATC 3 cut(s) 50, 376, 711
AcoI YGGCCR 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 1009
AdeI CACNNNGTG 1 cut(s) 795
AfaI GTAC 2 cut(s) 788, 1163
AfiI CCNNNNNNNGG 1 cut(s) 1213
AflII CTTAAG 1 cut(s) 1327
AflIII ACRYGT 2 cut(s) 398, 783
AgsI TTSAA 5 cut(s) 23, 809, 1284, 1385, 1466
AjiI CACGTC 1 cut(s) 399
AjnI CCWGG 2 cut(s) 461, 1057
AleI CACNNNNGTG 1 cut(s) 1263
AluBI AGCT 6 cut(s) 284, 295, 419, 613, 1103, 1377
AluI AGCT 6 cut(s) 284, 295, 419, 613, 1103, 1377
Alw21I GWGCWC 4 cut(s) 297, 324, 1236, 1437
Alw26I GTCTC 4 cut(s) 100, 219, 1197, 1413
AlwI GGATC 3 cut(s) 50, 376, 711
AoxI GGCC 2 cut(s) 496, 603
ApeKI GCWGC 3 cut(s) 65, 68, 632
AspLEI GCGC 6 cut(s) 7, 209, 673, 686, 821, 949
AspS9I GGNCC 1 cut(s) 1063
AsuC2I CCSGG 1 cut(s) 1368
AsuHPI GGTGA 3 cut(s) 451, 1366, 1514
AsuII TTCGAA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 1063
BaeGI GKGCMC 2 cut(s) 47, 770
BalI TGGCCA 1 cut(s) 498
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 4 cut(s) 297, 324, 1236, 1437
BbvI GCAGC 3 cut(s) 77, 80, 619
BccI CCATC 3 cut(s) 36, 994, 1493
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 2 cut(s) 463, 1059
BciVI GTATCC 2 cut(s) 711, 1044
BclI TGATCA 1 cut(s) 171
BcnI CCSGG 1 cut(s) 1368
BcoDI GTCTC 4 cut(s) 100, 219, 1197, 1413
BfaI CTAG 2 cut(s) 141, 1112
BfoI RGCGCY 2 cut(s) 210, 674
BfrI CTTAAG 1 cut(s) 1327
BfuI GTATCC 2 cut(s) 711, 1044
BisI GCNGC 3 cut(s) 66, 69, 633
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 3 cut(s) 67, 70, 634
Bme1390I CCNGG 3 cut(s) 463, 1059, 1368
Bme18I GGWCC 1 cut(s) 1063
BmgBI CACGTC 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 1063
BmiI GGNNCC 4 cut(s) 46, 1064, 1152, 1365
BmrFI CCNGG 3 cut(s) 463, 1059, 1368
BmrI ACTGGG 2 cut(s) 1103, 1251
BmsI GCATC 3 cut(s) 825, 1098, 1131
BmuI ACTGGG 2 cut(s) 1103, 1251
BpmI CTGGAG 2 cut(s) 283, 1437
Bpu1102I GCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 997
BpuMI CCSGG 1 cut(s) 1368
BsaBI GATNNNNATC 1 cut(s) 506
BsaI GGTCTC 1 cut(s) 1197
BsaJI CCNNGG 2 cut(s) 606, 1058
Bsc4I CCNNNNNNNGG 1 cut(s) 1213
Bse1I ACTGG 5 cut(s) 300, 1098, 1145, 1246, 1306
Bse3DI GCAATG 2 cut(s) 78, 1175
Bse8I GATNNNNATC 1 cut(s) 506
BseBI CCWGG 2 cut(s) 463, 1059
BseDI CCNNGG 2 cut(s) 606, 1058
BseGI GGATG 6 cut(s) 750, 853, 1005, 1012, 1113, 1376
BseJI GATNNNNATC 1 cut(s) 506
BseLI CCNNNNNNNGG 1 cut(s) 1213
BseMI GCAATG 2 cut(s) 78, 1175
BseMII CTCAG 2 cut(s) 282, 528
BseNI ACTGG 5 cut(s) 300, 1098, 1145, 1246, 1306
BseRI GAGGAG 2 cut(s) 1130, 1358
BseSI GKGCMC 2 cut(s) 47, 770
BseXI GCAGC 3 cut(s) 77, 80, 619
BseYI CCCAGC 3 cut(s) 415, 656, 1103
BsgI GTGCAG 2 cut(s) 73, 389
BshFI GGCC 2 cut(s) 498, 605
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 4 cut(s) 297, 324, 1236, 1437
BsiSI CCGG 1 cut(s) 1368
BsiWI CGTACG 1 cut(s) 1161
BslFI GGGAC 1 cut(s) 1325
BslI CCNNNNNNNGG 1 cut(s) 1213
BsmAI GTCTC 4 cut(s) 100, 219, 1197, 1413
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 1325
BsnI GGCC 2 cut(s) 498, 605
Bso31I GGTCTC 1 cut(s) 1197
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 6 cut(s) 47, 297, 324, 770, 1236, 1437
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 7 cut(s) 55, 75, 103, 171, 381, 507, 703
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 3 cut(s) 240, 548, 1413
BspANI GGCC 2 cut(s) 498, 605
BspCNI CTCAG 2 cut(s) 283, 529
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 4 cut(s) 46, 1064, 1152, 1365
BspPI GGATC 3 cut(s) 50, 376, 711
BspT104I TTCGAA 1 cut(s) 235
BspT107I GGYRCC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 1327
BspTNI GGTCTC 1 cut(s) 1197
BsrDI GCAATG 2 cut(s) 78, 1175
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 5 cut(s) 300, 1098, 1145, 1246, 1306
BssECI CCNNGG 2 cut(s) 606, 1058
BssMI GATC 7 cut(s) 55, 75, 103, 171, 381, 507, 703
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 463, 1059
Bst4CI ACNGT 5 cut(s) 94, 429, 522, 760, 1262
Bst6I CTCTTC 3 cut(s) 131, 734, 836
BstAFI CTTAAG 1 cut(s) 1327
BstAUI TGTACA 1 cut(s) 786
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 6 cut(s) 282, 514, 630, 682, 817, 985
BstDEI CTNAG 2 cut(s) 291, 537
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 6 cut(s) 750, 853, 1005, 1012, 1113, 1376
BstH2I RGCGCY 2 cut(s) 210, 674
BstHHI GCGC 6 cut(s) 7, 209, 673, 686, 821, 949
BstKTI GATC 7 cut(s) 58, 78, 106, 174, 384, 510, 706
BstMAI GTCTC 4 cut(s) 100, 219, 1197, 1413
BstMBI GATC 7 cut(s) 55, 75, 103, 171, 381, 507, 703
BstMWI GCNNNNNNNGC 2 cut(s) 13, 677
BstNI CCWGG 2 cut(s) 463, 1059
BstNSI RCATGY 4 cut(s) 725, 787, 1274, 1433
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 3 cut(s) 461, 1057, 1366
BstSLI GKGCMC 2 cut(s) 47, 770
BstV1I GCAGC 3 cut(s) 77, 80, 619
BstXI CCANNNNNNTGG 2 cut(s) 343, 1073
BsuI GTATCC 2 cut(s) 711, 1044
BsuRI GGCC 2 cut(s) 498, 605
BtrI CACGTC 1 cut(s) 399
BtsCI GGATG 6 cut(s) 750, 853, 1005, 1012, 1113, 1376
BtsI GCAGTG 2 cut(s) 675, 768
BtsIMutI CAGTG 9 cut(s) 222, 307, 675, 765, 768, 1152, 1239, 1267, 1313
Cac8I GCNNGC 6 cut(s) 282, 514, 630, 682, 817, 985
CciI TCATGA 1 cut(s) 168
CfoI GCGC 6 cut(s) 7, 209, 673, 686, 821, 949
Cfr13I GGNCC 1 cut(s) 1063
Csp6I GTAC 2 cut(s) 787, 1162
CviQI GTAC 2 cut(s) 787, 1162
DdeI CTNAG 2 cut(s) 291, 537
DpnI GATC 7 cut(s) 57, 77, 105, 173, 383, 509, 705
DpnII GATC 7 cut(s) 55, 75, 103, 171, 381, 507, 703
DraI TTTAAA 1 cut(s) 1482
DraIII CACNNNGTG 1 cut(s) 795
DrdI GACNNNNNNGTC 1 cut(s) 1163
DseDI GACNNNNNNGTC 1 cut(s) 1163
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 3 cut(s) 131, 734, 836
EarI CTCTTC 3 cut(s) 131, 734, 836
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 605
Eco24I GRGCYC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 1197
Eco32I GATATC 1 cut(s) 873
Eco47I GGWCC 1 cut(s) 1063
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 1009
Eco91I GGTNACC 1 cut(s) 457
EcoICRI GAGCTC 1 cut(s) 295
EcoO65I GGTNACC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 461, 1057
EcoRV GATATC 1 cut(s) 873
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 100
FaqI GGGAC 1 cut(s) 1325
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 66, 69, 633
FokI GGATG 6 cut(s) 757, 860, 1012, 1019, 1120, 1383
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 3 cut(s) 66, 69, 633
FspBI CTAG 2 cut(s) 141, 1112
GlaI GCGC 6 cut(s) 6, 208, 672, 685, 820, 948
GluI GCNGC 3 cut(s) 66, 69, 633
GsaI CCCAGC 3 cut(s) 419, 660, 1107
GsuI CTGGAG 2 cut(s) 283, 1437
HaeII RGCGCY 2 cut(s) 210, 674
HaeIII GGCC 2 cut(s) 498, 605
HapII CCGG 1 cut(s) 1368
HhaI GCGC 6 cut(s) 7, 209, 673, 686, 821, 949
Hin6I GCGC 6 cut(s) 5, 207, 671, 684, 819, 947
HinP1I GCGC 6 cut(s) 5, 207, 671, 684, 819, 947
HincII GTYRAC 2 cut(s) 733, 781
HindII GTYRAC 2 cut(s) 733, 781
HinfI GANTC 3 cut(s) 197, 353, 1157
HpaII CCGG 1 cut(s) 1368
HphI GGTGA 3 cut(s) 451, 1366, 1514
Hpy166II GTNNAC 5 cut(s) 425, 733, 781, 789, 1410
Hpy188I TCNGA 4 cut(s) 100, 176, 1028, 1300
Hpy188III TCNNGA 3 cut(s) 169, 976, 1048
Hpy8I GTNNAC 5 cut(s) 425, 733, 781, 789, 1410
HpyAV CCTTC 4 cut(s) 94, 705, 1327, 1502
HpyCH4III ACNGT 5 cut(s) 94, 429, 522, 760, 1262
HpyCH4IV ACGT 2 cut(s) 398, 1164
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 677
HpyF3I CTNAG 2 cut(s) 291, 537
HpySE526I ACGT 2 cut(s) 398, 1164
HspAI GCGC 6 cut(s) 5, 207, 671, 684, 819, 947
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 7 cut(s) 55, 75, 103, 171, 381, 507, 703
LmnI GCTCC 2 cut(s) 327, 610
Lsp1109I GCAGC 3 cut(s) 77, 80, 619
LweI GCATC 3 cut(s) 825, 1098, 1131
MaeI CTAG 2 cut(s) 141, 1112
MaeII ACGT 2 cut(s) 398, 1164
MaeIII GTNAC 6 cut(s) 394, 401, 457, 958, 1132, 1318
MalI GATC 7 cut(s) 57, 77, 105, 173, 383, 509, 705
MboI GATC 7 cut(s) 55, 75, 103, 171, 381, 507, 703
MboII GAAGA 7 cut(s) 118, 751, 853, 943, 1015, 1138, 1268
MhlI GDGCHC 6 cut(s) 47, 297, 324, 770, 1236, 1437
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 2 cut(s) 942, 1380
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 2 cut(s) 362, 1151
Mox20I TGGCCA 1 cut(s) 498
MscI TGGCCA 1 cut(s) 498
MseI TTAA 5 cut(s) 477, 570, 1328, 1379, 1481
MslI CAYNNNNRTG 6 cut(s) 227, 330, 390, 726, 967, 1263
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 1415
MspCI CTTAAG 1 cut(s) 1327
MspI CCGG 1 cut(s) 1368
MspR9I CCNGG 3 cut(s) 463, 1059, 1368
MvaI CCWGG 2 cut(s) 463, 1059
MwoI GCNNNNNNNGC 2 cut(s) 13, 677
NciI CCSGG 1 cut(s) 1368
NdeII GATC 7 cut(s) 55, 75, 103, 171, 381, 507, 703
NlaIV GGNNCC 4 cut(s) 46, 1064, 1152, 1365
NmuCI GTSAC 5 cut(s) 394, 401, 457, 1132, 1318
NspI RCATGY 4 cut(s) 725, 787, 1274, 1433
NspV TTCGAA 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 1263
PagI TCATGA 1 cut(s) 168
PceI AGGCCT 1 cut(s) 605
PciI ACATGT 1 cut(s) 783
PfeI GAWTC 1 cut(s) 197
Pfl23II CGTACG 1 cut(s) 1161
PflFI GACNNNGTC 1 cut(s) 1316
PfoI TCCNGGA 1 cut(s) 1366
PkrI GCNGC 3 cut(s) 67, 70, 634
PleI GAGTC 2 cut(s) 361, 1151
PpsI GAGTC 2 cut(s) 361, 1151
PscI ACATGT 1 cut(s) 783
PsiI TTATAA 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 461, 1057
PspEI GGTNACC 1 cut(s) 457
PspFI CCCAGC 3 cut(s) 415, 656, 1103
PspGI CCWGG 2 cut(s) 461, 1057
PspLI CGTACG 1 cut(s) 1161
PspN4I GGNNCC 4 cut(s) 46, 1064, 1152, 1365
PspPI GGNCC 1 cut(s) 1063
PsyI GACNNNGTC 1 cut(s) 1316
RsaI GTAC 2 cut(s) 788, 1163
RsaNI GTAC 2 cut(s) 787, 1162
RseI CAYNNNNRTG 6 cut(s) 227, 330, 390, 726, 967, 1263
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 5 cut(s) 477, 570, 1328, 1379, 1481
SatI GCNGC 3 cut(s) 66, 69, 633
Sau3AI GATC 7 cut(s) 55, 75, 103, 171, 381, 507, 703
Sau96I GGNCC 1 cut(s) 1063
SchI GAGTC 2 cut(s) 362, 1151
ScrFI CCNGG 3 cut(s) 463, 1059, 1368
SduI GDGCHC 6 cut(s) 47, 297, 324, 770, 1236, 1437
SfaNI GCATC 3 cut(s) 825, 1098, 1131
SfuI TTCGAA 1 cut(s) 235
SinI GGWCC 1 cut(s) 1063
SmiMI CAYNNNNRTG 6 cut(s) 227, 330, 390, 726, 967, 1263
SmlI CTYRAG 2 cut(s) 976, 1327
SmoI CTYRAG 2 cut(s) 976, 1327
Sse9I AATT 2 cut(s) 942, 1380
SseBI AGGCCT 1 cut(s) 605
SsiI CCGC 3 cut(s) 240, 548, 1413
SspMI CTAG 2 cut(s) 141, 1112
SstI GAGCTC 1 cut(s) 297
StuI AGGCCT 1 cut(s) 605
StyD4I CCNGG 3 cut(s) 461, 1057, 1366
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 5 cut(s) 94, 429, 522, 760, 1262
TaiI ACGT 2 cut(s) 401, 1167
TaqI TCGA 5 cut(s) 54, 145, 235, 525, 991
TasI AATT 2 cut(s) 942, 1380
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 5 cut(s) 477, 570, 1328, 1379, 1481
Tru9I TTAA 5 cut(s) 477, 570, 1328, 1379, 1481
TscAI CASTG 9 cut(s) 229, 307, 682, 765, 775, 1152, 1246, 1267, 1313
TseFI GTSAC 5 cut(s) 394, 401, 457, 1132, 1318
TseI GCWGC 3 cut(s) 65, 68, 632
Tsp45I GTSAC 5 cut(s) 394, 401, 457, 1132, 1318
TspDTI ATGAA 7 cut(s) 124, 210, 543, 944, 969, 1049, 1187
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 9 cut(s) 229, 307, 682, 765, 775, 1152, 1246, 1267, 1313
Tth111I GACNNNGTC 1 cut(s) 1316
Vha464I CTTAAG 1 cut(s) 1327
VpaK11BI GGWCC 1 cut(s) 1063
XceI RCATGY 4 cut(s) 725, 787, 1274, 1433
XspI CTAG 2 cut(s) 141, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.