Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0015582

Physical Location & Seq

Genomic Coordinates Reverse (-)

21855742 .. 21856149

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0235900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCCCCAGCCGCAAAACCAGCACTGCTAACTCTGCCCCTAAATACTTCCAATGTCGCCACTGTCCAAAATCATTTACCAATGGTCACGCTCTCGGTGGCCACCAGAATGCCGACCATGGCCATGACAAGGGTATGATGAAGACTCTGAAACAGATCTTGGAAATCTATAGGGAACAGTTTCCAGGTAATTCCTCATCTCCTTCTGTTGCGGCCGAAGCAAAGCTGCTGCCATCAGCCGAAGTCACTGTAGGCCATGGAATTGTTATGCCTGGAAGGTTGACAGAGCCCGAGCTGCCCGGAGGAGTTAGAACAATAGATTTTCTCAAGCAATGGAAGCCCATCTATACTGATCCAATTGTTCCAGTGGAGATTGAGGAGAACTTGGACTTGGAACTCAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0016311 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

135

Amino Acids

14.85

Weight (kDa)

7.01

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015582)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35830 FvH4_3g35830 FvH4_3g35830
malus_domestica	MD17G1272300.v1.1
prunus_persica	Prupe.3G011700_v2.0.a1
pyrus_communis	pycom17g27120
rosa_chinensis	RchiOBHm_Chr3g0487721
rosa_laevigata	RLG00000022984
rosa_multiflora	Rmu_sc0008132.1_g000014 Rmu_sc0022657.1_g000001
rosa_roxburghii	Rroxscaffold_6G00394570
rosa_rugosa	Rorug03G0235900
rosa_samantha	Rh3BG320500 Rh3CG319000 Rh3DG317700
rosa_wichuraiana	Rw3G025190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	13, 212
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	3 cut(s)	100, 121, 213
AfiI	CCNNNNNNNGG	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	184, 271
AjuI	GAANNNNNNNTTGG	4 cut(s)	143, 175, 374, 406
AluBI	AGCT	2 cut(s)	226, 295
AluI	AGCT	2 cut(s)	226, 295
AlwI	GGATC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	5 cut(s)	3, 100, 121, 213, 253
ApeKI	GCWGC	3 cut(s)	226, 229, 295
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	290
BalI	TGGCCA	2 cut(s)	102, 123
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	213, 216, 282
BccI	CCATC	2 cut(s)	241, 350
BciT130I	CCWGG	2 cut(s)	186, 273
BcnI	CCSGG	1 cut(s)	300
BfmI	CTRYAG	2 cut(s)	169, 249
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	5 cut(s)	13, 213, 227, 230, 296
BlsI	GCNGC	5 cut(s)	14, 214, 228, 231, 297
Bme1390I	CCNGG	3 cut(s)	186, 273, 300
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	186, 273, 300
BpiI	GAAGAC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	118, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	186, 273
BseDI	CCNNGG	2 cut(s)	118, 256
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	2 cut(s)	318, 392
BseX3I	CGGCCG	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	213, 216, 282
BseYI	CCCAGC	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	5 cut(s)	5, 102, 123, 215, 255
BsiEI	CGRYCG	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	5 cut(s)	5, 102, 123, 215, 255
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	156, 352
Bsp19I	CCATGG	2 cut(s)	118, 256
BspACI	CCGC	2 cut(s)	13, 212
BspANI	GGCC	5 cut(s)	5, 102, 123, 215, 255
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	118, 256
BssMI	GATC	2 cut(s)	156, 352
BssT1I	CCWWGG	2 cut(s)	118, 256
Bst2UI	CCWGG	2 cut(s)	186, 273
Bst4CI	ACNGT	3 cut(s)	65, 180, 250
BstDSI	CCRYGG	2 cut(s)	118, 256
BstKTI	GATC	2 cut(s)	159, 355
BstMBI	GATC	2 cut(s)	156, 352
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 35, 218, 295, 337
BstNI	CCWGG	2 cut(s)	186, 273
BstSCI	CCNGG	3 cut(s)	184, 271, 298
BstSFI	CTRYAG	2 cut(s)	169, 249
BstV1I	GCAGC	3 cut(s)	213, 216, 282
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BstZI	CGGCCG	1 cut(s)	213
BsuRI	GGCC	5 cut(s)	5, 102, 123, 215, 255
BtgI	CCRYGG	2 cut(s)	118, 256
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	4 cut(s)	24, 61, 246, 372
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	3 cut(s)	119, 125, 257
DpnI	GATC	2 cut(s)	158, 354
DpnII	GATC	2 cut(s)	156, 352
EaeI	YGGCCR	3 cut(s)	100, 121, 213
EagI	CGGCCG	1 cut(s)	213
EclXI	CGGCCG	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	118, 256
Eco24I	GRGCYC	1 cut(s)	291
Eco52I	CGGCCG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	184, 271
EcoT14I	CCWWGG	2 cut(s)	118, 256
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	2 cut(s)	118, 256
FaeI	CATG	3 cut(s)	122, 128, 260
FaiI	YATR	7 cut(s)	120, 126, 137, 171, 258, 269, 348
FatI	CATG	3 cut(s)	118, 124, 256
Fnu4HI	GCNGC	5 cut(s)	13, 213, 227, 230, 296
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	5 cut(s)	13, 213, 227, 230, 296
GluI	GCNGC	5 cut(s)	13, 213, 227, 230, 296
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	5 cut(s)	5, 102, 123, 215, 255
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	3 cut(s)	122, 128, 260
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	1 cut(s)	150
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	2 cut(s)	213, 270
HpyCH4III	ACNGT	3 cut(s)	65, 180, 250
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 35, 218, 295, 337
Hsp92II	CATG	3 cut(s)	122, 128, 260
Kzo9I	GATC	2 cut(s)	156, 352
LpnPI	CCDG	9 cut(s)	22, 34, 119, 171, 198, 258, 285, 313, 378
Lsp1109I	GCAGC	3 cut(s)	213, 216, 282
MaeIII	GTNAC	2 cut(s)	86, 244
MalI	GATC	2 cut(s)	158, 354
MboI	GATC	2 cut(s)	156, 352
MboII	GAAGA	1 cut(s)	154
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	291
MlsI	TGGCCA	2 cut(s)	102, 123
MluCI	AATT	4 cut(s)	190, 261, 357, 401
MluNI	TGGCCA	2 cut(s)	102, 123
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	3 cut(s)	205, 296, 370
Mox20I	TGGCCA	2 cut(s)	102, 123
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	2 cut(s)	102, 123
MslI	CAYNNNNRTG	2 cut(s)	108, 123
Msp20I	TGGCCA	2 cut(s)	102, 123
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	3 cut(s)	186, 273, 300
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	2 cut(s)	186, 273
MwoI	GCNNNNNNNGC	5 cut(s)	21, 35, 218, 295, 337
NciI	CCSGG	1 cut(s)	300
NcoI	CCATGG	2 cut(s)	118, 256
NdeII	GATC	2 cut(s)	156, 352
NlaIII	CATG	3 cut(s)	122, 128, 260
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	86, 244
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	180
PkrI	GCNGC	5 cut(s)	14, 214, 228, 231, 297
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	2 cut(s)	184, 271
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	184, 271
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	156
RseI	CAYNNNNRTG	2 cut(s)	108, 123
SatI	GCNGC	5 cut(s)	13, 213, 227, 230, 296
Sau3AI	GATC	2 cut(s)	156, 352
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	3 cut(s)	186, 273, 300
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	190, 228, 281, 297
SfcI	CTRYAG	2 cut(s)	169, 249
SmiMI	CAYNNNNRTG	2 cut(s)	108, 123
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	4 cut(s)	190, 261, 357, 401
SsiI	CCGC	2 cut(s)	13, 212
StyD4I	CCNGG	3 cut(s)	184, 271, 298
StyI	CCWWGG	2 cut(s)	118, 256
TaaI	ACNGT	3 cut(s)	65, 180, 250
TasI	AATT	4 cut(s)	190, 261, 357, 401
TauI	GCSGC	2 cut(s)	15, 215
TscAI	CASTG	4 cut(s)	31, 68, 253, 372
TseFI	GTSAC	2 cut(s)	86, 244
TseI	GCWGC	3 cut(s)	226, 229, 295
Tsp45I	GTSAC	2 cut(s)	86, 244
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	4 cut(s)	31, 68, 253, 372
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.