Rmu_sc0023072.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023072.1
OG0023040
Physical Location & Seq
Reverse (-)
4008 .. 4388
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023072.1_g000002.1.cds

Sequence Viewer

Length: 381 bp
ctggctgttcagtggaatggaatccgcttgcttgactataaaagggtcaatgacttcaacaaggacatgttttgcttaaaggcacgtctcaatttctgtggaagggaaatcacagaatatgatatgatctacaagactcttttcacctttcctactttagcgtttatgctagcggacaagtataggctggagcatgacaacaaaagaatcacaacctttaataagttgatcagcctactgcaagtggctgagaggcaaaatgaggatctcttgaacaacaatgctaggcccactgggacaaagaaaattcccgaggctaactatggaaaaataaaaggtgcaacaaaaaacctcatttgcgaggaacttattcctcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

126

Amino Acids

14.79

Weight (kDa)

9.32

Isoelectric Point (pI)

26.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023040)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000368.1_g000036 Rmu_sc0002093.1_g000021 Rmu_sc0009583.1_g000007 Rmu_sc0023072.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 25, 173
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 306
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 2 cut(s) 58, 274
AjiI CACGTC 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 136
AsuNHI GCTAGC 1 cut(s) 169
AvaI CYCGRG 1 cut(s) 311
BclI TGATCA 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 170, 285
BmeT110I CYCGRG 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 288
BmrI ACTGGG 1 cut(s) 303
BmtI GCTAGC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 298
BshFI GGCC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 3 cut(s) 126, 228, 265
BspACI CCGC 2 cut(s) 25, 173
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 241
BspOI GCTAGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 126, 228, 265
BstC8I GCNNGC 2 cut(s) 29, 171
BstDEI CTNAG 1 cut(s) 249
BstKTI GATC 3 cut(s) 129, 231, 268
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 126, 228, 265
BstNSI RCATGY 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 1 cut(s) 289
BtrI CACGTC 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 17, 291
Cac8I GCNNGC 2 cut(s) 29, 171
Cfr13I GGNCC 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 2 cut(s) 67, 194
CviJI RGCY 6 cut(s) 5, 187, 234, 248, 289, 317
CviKI_1 RGCY 6 cut(s) 5, 187, 234, 248, 289, 317
DdeI CTNAG 1 cut(s) 249
DpnI GATC 3 cut(s) 128, 230, 267
DpnII GATC 3 cut(s) 126, 228, 265
Eco88I CYCGRG 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 2 cut(s) 70, 197
FaiI YATR 8 cut(s) 39, 68, 120, 125, 167, 183, 195, 324
FaqI GGGAC 1 cut(s) 310
FatI CATG 2 cut(s) 66, 193
FbaI TGATCA 1 cut(s) 228
FspBI CTAG 2 cut(s) 170, 285
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 289
Hin1II CATG 2 cut(s) 70, 197
HinfI GANTC 3 cut(s) 21, 136, 207
HphI GGTGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 271, 311
HpyAV CCTTC 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 241, 341
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 2 cut(s) 70, 197
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 3 cut(s) 126, 228, 265
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 173, 279
MaeI CTAG 2 cut(s) 170, 285
MaeII ACGT 1 cut(s) 85
MalI GATC 3 cut(s) 128, 230, 267
MboI GATC 3 cut(s) 126, 228, 265
MflI RGATCY 1 cut(s) 265
MluCI AATT 2 cut(s) 91, 306
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 5 cut(s) 246, 256, 307, 355, 362
MroXI GAANNNNTTC 1 cut(s) 369
MseI TTAA 2 cut(s) 77, 219
NdeII GATC 3 cut(s) 126, 228, 265
NheI GCTAGC 1 cut(s) 169
NlaIII CATG 2 cut(s) 70, 197
NspI RCATGY 1 cut(s) 70
PciI ACATGT 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 2 cut(s) 21, 207
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PscI ACATGT 1 cut(s) 66
PspPI GGNCC 1 cut(s) 288
PsuI RGATCY 1 cut(s) 265
SaqAI TTAA 2 cut(s) 77, 219
Sau3AI GATC 3 cut(s) 126, 228, 265
Sau96I GGNCC 1 cut(s) 288
SchI GAGTC 1 cut(s) 130
SetI ASST 5 cut(s) 88, 149, 218, 340, 354
Sse9I AATT 2 cut(s) 91, 306
SsiI CCGC 2 cut(s) 25, 173
SspMI CTAG 2 cut(s) 170, 285
TaiI ACGT 1 cut(s) 88
TasI AATT 2 cut(s) 91, 306
TfiI GAWTC 2 cut(s) 21, 207
Tru1I TTAA 2 cut(s) 77, 219
Tru9I TTAA 2 cut(s) 77, 219
TscAI CASTG 2 cut(s) 17, 298
TspRI CASTG 2 cut(s) 17, 298
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 2 cut(s) 170, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.