Rmu_sc0023758.1_g000002

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023758.1
Physical Location & Seq
Reverse (-)
2967 .. 6695
3729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023758.1_g000002.1.cds

Sequence Viewer

Length: 1626 bp
atgagtgaattgtcgttagctgaccgtgctactattgccaacatgtctcctgagtatggtgcaaccatgggcttctttcccgttgatcatgtcacgctgcaatatctaaagctaacaggcagaactgctgacactggttttgctgtgccaaaggaatcccaaaagaaagttgtagagttctcatttcatggaatccctgcacagcttaggcatggagatgtcgtaattgcagctattaccagttgcacaaacacctcaaatcctagtgtaatgctaggagctgccttggttgcaaagaaagcttgtgaattaggattggaggtcaagccatggattaagactagtcttgcaccaggctctggggttgtaaccaaatacttggaaaagagtgggttgcagaagtatctgaatcagctaggatttaatattgttgggtatggatgcaccacatgcattggaaattcaggagatattgatgaagcagtggcatcagctattacggaaaatgatattgtagcttcagccgtattatctggaaataggaattttgagggccgtgttcatcctttaacacgggctaattatcttgcttctcctccccttgtggttgcttatgctcttgctggcacggtggatattgattttgacactgaacctataggggtgggaaaagatggaaagaagatatttttcagggatatatggccatctaatcaagaagtagcagaggctgtgcaatcaaatgtgcttcctcagatgtttatggctacatatgaagcaatcaccaaaggaaatccaatgtggaatcagttatctgtaccttctggcactctctatgcatgggacccaaagtccacttatatacatgagccaccttattttaaagatatgaccatgtctcctcccggtgctcatggtgtgaagaatgcttactgcttgctcaactttggagatagtattacaactgaccacatctcaccagctggtagcatccacaaagatagtccagcagccaaataccttatggagcgtggtgttgatagaagagacttcaactcttatggtagtcgtcgtggtaatgatgaaataatggcaagaggtacttttgcaaatattcgcctggtcaataagtttttgaaaggagaagtgggccccaaaacaattcatcatccctcaggagagaaagtttccgtgtttgatgctgccatgaagtacaaaagtgaagggcatgacacaatcattttggctggtgctgaatatgggagtggaagttctcgtgattgggctgctaagggtccaatgctactgggggtgaaggctgtcatagcaaagagctttgagcgcattcaccgcagtaatcttgtgggcatgggtatcattcccctatgcttcaaggctggggaggatgctgaaactcttggattgactggggaggaacgctacaccatcgaccttccaagcactgttagcgaaattagacccggtcaggatatcacagtggtgacagacaatggaaagtcatttgtatgtacgctacggtttgatacagaggtggagctggcttattttgaccacggaggcattttgcaatatgtcatcaggaatctgatcggcgcaaagagttag

Protein Analysis

541

Amino Acids

58.53

Weight (kDa)

6.25

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025547)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 359
AciI CCGC 1 cut(s) 1351
AcoI YGGCCR 1 cut(s) 704
AcsI RAATTY 2 cut(s) 460, 544
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 4 cut(s) 819, 1102, 1214, 1531
AfiI CCNNNNNNNGG 2 cut(s) 56, 359
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 3 cut(s) 1054, 1138, 1393
AhdI GACNNNNNGTC 1 cut(s) 850
AhlI ACTAGT 1 cut(s) 341
AjnI CCWGG 2 cut(s) 352, 1119
AleI CACNNNNGTG 1 cut(s) 1499
AloI GAACNNNNNNTCC 2 cut(s) 1255, 1287
Alw21I GWGCWC 1 cut(s) 913
Alw26I GTCTC 3 cut(s) 51, 903, 1041
AlwNI CAGNNNCTG 2 cut(s) 359, 731
AoxI GGCC 3 cut(s) 553, 704, 1150
ApaI GGGCCC 1 cut(s) 1154
ApeKI GCWGC 6 cut(s) 97, 230, 281, 1010, 1202, 1286
ApoI RAATTY 2 cut(s) 460, 544
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AspLEI GCGC 2 cut(s) 1344, 1616
AspS9I GGNCC 5 cut(s) 553, 844, 1150, 1151, 1295
AsuC2I CCSGG 2 cut(s) 906, 1482
AsuHPI GGTGA 5 cut(s) 775, 969, 1324, 1340, 1513
AvaII GGWCC 2 cut(s) 844, 1295
AxyI CCTNAGG 1 cut(s) 1174
BaeGI GKGCMC 1 cut(s) 1154
BaeI ACNNNNGTAYC 2 cut(s) 1536, 1569
BalI TGGCCA 1 cut(s) 706
BanII GRGCYC 1 cut(s) 1154
BarI GAAGNNNNNNTAC 2 cut(s) 914, 946
BauI CACGAG 1 cut(s) 1275
Bbv12I GWGCWC 1 cut(s) 913
BbvI GCAGC 6 cut(s) 84, 242, 268, 1022, 1189, 1273
BccI CCATC 3 cut(s) 668, 715, 1454
BceAI ACGGC 2 cut(s) 509, 540
BciT130I CCWGG 2 cut(s) 354, 1121
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 2 cut(s) 906, 1482
BcoDI GTCTC 3 cut(s) 51, 903, 1041
BcuI ACTAGT 1 cut(s) 341
BfaI CTAG 4 cut(s) 264, 275, 342, 416
BfmI CTRYAG 1 cut(s) 657
BisI GCNGC 6 cut(s) 98, 231, 282, 1011, 1203, 1287
BlsI GCNGC 6 cut(s) 99, 232, 283, 1012, 1204, 1288
Bme1390I CCNGG 4 cut(s) 354, 906, 1121, 1482
Bme18I GGWCC 2 cut(s) 844, 1295
BmeRI GACNNNNNGTC 1 cut(s) 850
BmgT120I GGNCC 5 cut(s) 553, 844, 1150, 1151, 1295
BmiI GGNNCC 5 cut(s) 845, 846, 1152, 1153, 1296
BmrFI CCNGG 4 cut(s) 354, 906, 1121, 1482
BmrI ACTGGG 2 cut(s) 1316, 1437
BmsI GCATC 5 cut(s) 431, 497, 999, 1189, 1396
BmuI ACTGGG 2 cut(s) 1316, 1437
Bpu10I CCTNAGC 2 cut(s) 206, 1290
BpuMI CCSGG 2 cut(s) 906, 1482
BsaJI CCNNGG 4 cut(s) 66, 285, 329, 1573
BsaXI ACNNNNNCTCC 8 cut(s) 207, 237, 883, 913, 1170, 1200, 1255, 1285
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 359
Bse1I ACTGG 4 cut(s) 139, 240, 1311, 1432
Bse21I CCTNAGG 1 cut(s) 1174
BseBI CCWGG 2 cut(s) 354, 1121
BseDI CCNNGG 4 cut(s) 66, 285, 329, 1573
BseGI GGATG 5 cut(s) 446, 562, 990, 1168, 1411
BseLI CCNNNNNNNGG 2 cut(s) 56, 359
BseMII CTCAG 3 cut(s) 42, 767, 1188
BseNI ACTGG 4 cut(s) 139, 240, 1311, 1432
BseRI GAGGAG 2 cut(s) 585, 891
BseSI GKGCMC 1 cut(s) 1154
BseXI GCAGC 6 cut(s) 84, 242, 268, 1022, 1189, 1273
BseYI CCCAGC 1 cut(s) 1397
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 3 cut(s) 555, 706, 1152
BsiHKAI GWGCWC 1 cut(s) 913
BsiSI CCGG 2 cut(s) 906, 1482
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 2 cut(s) 56, 359
BsmAI GTCTC 3 cut(s) 51, 903, 1041
BsmFI GGGAC 1 cut(s) 857
BsmI GAATGC 2 cut(s) 931, 1344
BsnI GGCC 3 cut(s) 555, 706, 1152
Bsp120I GGGCCC 1 cut(s) 1150
Bsp1286I GDGCHC 2 cut(s) 913, 1154
Bsp143I GATC 2 cut(s) 85, 1608
Bsp19I CCATGG 2 cut(s) 66, 329
BspACI CCGC 1 cut(s) 1351
BspANI GGCC 3 cut(s) 555, 706, 1152
BspCNI CTCAG 3 cut(s) 43, 766, 1187
BspLI GGNNCC 5 cut(s) 845, 846, 1152, 1153, 1296
BsrI ACTGG 4 cut(s) 139, 240, 1311, 1432
BssECI CCNNGG 4 cut(s) 66, 285, 329, 1573
BssMI GATC 2 cut(s) 85, 1608
BssSI CACGAG 1 cut(s) 1275
BssT1I CCWWGG 3 cut(s) 66, 285, 329
Bst2BI CACGAG 1 cut(s) 1275
Bst2UI CCWGG 2 cut(s) 354, 1121
Bst4CI ACNGT 5 cut(s) 26, 631, 1465, 1498, 1539
Bst6I CTCTTC 1 cut(s) 1039
BstAPI GCANNNNNTGC 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 625, 938, 1560
BstDEI CTNAG 5 cut(s) 51, 206, 753, 1174, 1290
BstDSI CCRYGG 3 cut(s) 66, 329, 1573
BstF5I GGATG 5 cut(s) 446, 562, 990, 1168, 1411
BstHHI GCGC 2 cut(s) 1344, 1616
BstKTI GATC 2 cut(s) 88, 1611
BstMAI GTCTC 3 cut(s) 51, 903, 1041
BstMBI GATC 2 cut(s) 85, 1608
BstMWI GCNNNNNNNGC 9 cut(s) 26, 35, 290, 299, 450, 1325, 1341, 1350, 1467
BstNI CCWGG 2 cut(s) 354, 1121
BstNSI RCATGY 2 cut(s) 46, 453
BstSCI CCNGG 4 cut(s) 352, 904, 1119, 1480
BstSFI CTRYAG 1 cut(s) 657
BstSLI GKGCMC 1 cut(s) 1154
BstV1I GCAGC 6 cut(s) 84, 242, 268, 1022, 1189, 1273
BstXI CCANNNNNNTGG 1 cut(s) 379
Bsu36I CCTNAGG 1 cut(s) 1174
BsuRI GGCC 3 cut(s) 555, 706, 1152
BtgI CCRYGG 3 cut(s) 66, 329, 1573
BtsCI GGATG 5 cut(s) 446, 562, 990, 1168, 1411
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 5 cut(s) 132, 489, 648, 1461, 1503
Cac8I GCNNGC 3 cut(s) 625, 938, 1560
CaiI CAGNNNCTG 2 cut(s) 359, 731
CfoI GCGC 2 cut(s) 1344, 1616
Cfr13I GGNCC 5 cut(s) 553, 844, 1150, 1151, 1295
Csp6I GTAC 4 cut(s) 818, 1101, 1213, 1530
CspCI CAANNNNNGTGG 2 cut(s) 436, 471
CviQI GTAC 4 cut(s) 818, 1101, 1213, 1530
DdeI CTNAG 5 cut(s) 51, 206, 753, 1174, 1290
DpnI GATC 2 cut(s) 87, 1610
DpnII GATC 2 cut(s) 85, 1608
DraI TTTAAA 1 cut(s) 883
DriI GACNNNNNGTC 1 cut(s) 850
EaeI YGGCCR 1 cut(s) 704
Eam1104I CTCTTC 1 cut(s) 1039
Eam1105I GACNNNNNGTC 1 cut(s) 850
EarI CTCTTC 1 cut(s) 1039
Eco130I CCWWGG 3 cut(s) 66, 285, 329
Eco24I GRGCYC 1 cut(s) 1154
Eco32I GATATC 1 cut(s) 1492
Eco47I GGWCC 2 cut(s) 844, 1295
Eco57I CTGAAG 1 cut(s) 504
Eco81I CCTNAGG 1 cut(s) 1174
EcoO109I RGGNCCY 2 cut(s) 844, 1151
EcoRII CCWGG 2 cut(s) 352, 1119
EcoRV GATATC 1 cut(s) 1492
EcoT14I CCWWGG 3 cut(s) 66, 285, 329
EcoT22I ATGCAT 2 cut(s) 455, 841
EcoT38I GRGCYC 1 cut(s) 1154
ErhI CCWWGG 3 cut(s) 66, 285, 329
FalI AAGNNNNNCTT 2 cut(s) 1087, 1119
FaqI GGGAC 1 cut(s) 857
FauNDI CATATG 1 cut(s) 772
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 6 cut(s) 98, 231, 282, 1011, 1203, 1287
FokI GGATG 5 cut(s) 453, 549, 977, 1155, 1418
FriOI GRGCYC 1 cut(s) 1154
Fsp4HI GCNGC 6 cut(s) 98, 231, 282, 1011, 1203, 1287
FspBI CTAG 4 cut(s) 264, 275, 342, 416
GlaI GCGC 2 cut(s) 1343, 1615
GluI GCNGC 6 cut(s) 98, 231, 282, 1011, 1203, 1287
GsaI CCCAGC 1 cut(s) 1401
HaeIII GGCC 3 cut(s) 555, 706, 1152
HapII CCGG 2 cut(s) 906, 1482
HhaI GCGC 2 cut(s) 1344, 1616
Hin6I GCGC 2 cut(s) 1342, 1614
HinP1I GCGC 2 cut(s) 1342, 1614
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 5 cut(s) 155, 192, 409, 805, 1603
HpaII CCGG 2 cut(s) 906, 1482
HphI GGTGA 5 cut(s) 775, 969, 1324, 1340, 1513
Hpy166II GTNNAC 1 cut(s) 855
Hpy188I TCNGA 3 cut(s) 408, 756, 1608
Hpy188III TCNNGA 8 cut(s) 50, 465, 534, 716, 1176, 1277, 1487, 1600
Hpy8I GTNNAC 1 cut(s) 855
Hpy99I CGWCG 1 cut(s) 1074
HpyAV CCTTC 4 cut(s) 831, 1217, 1309, 1463
HpyCH4III ACNGT 5 cut(s) 26, 631, 1465, 1498, 1539
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 35, 290, 299, 450, 1325, 1341, 1350, 1467
HpyF3I CTNAG 5 cut(s) 51, 206, 753, 1174, 1290
HspAI GCGC 2 cut(s) 1342, 1614
KflI GGGWCCC 1 cut(s) 844
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 1608
LmnI GCTCC 3 cut(s) 278, 1027, 1555
Lsp1109I GCAGC 6 cut(s) 84, 242, 268, 1022, 1189, 1273
LweI GCATC 5 cut(s) 431, 497, 999, 1189, 1396
MaeI CTAG 4 cut(s) 264, 275, 342, 416
MaeIII GTNAC 3 cut(s) 91, 367, 1501
MalI GATC 2 cut(s) 87, 1610
MboI GATC 2 cut(s) 85, 1608
MboII GAAGA 3 cut(s) 694, 934, 1056
MhlI GDGCHC 2 cut(s) 913, 1154
MlsI TGGCCA 1 cut(s) 706
MluCI AATT 8 cut(s) 8, 225, 308, 460, 544, 580, 1161, 1473
MluNI TGGCCA 1 cut(s) 706
Mox20I TGGCCA 1 cut(s) 706
Mph1103I ATGCAT 2 cut(s) 455, 841
MscI TGGCCA 1 cut(s) 706
MseI TTAA 4 cut(s) 336, 423, 569, 882
MslI CAYNNNNRTG 3 cut(s) 216, 1499, 1525
Msp20I TGGCCA 1 cut(s) 706
MspA1I CMGCKG 1 cut(s) 983
MspI CCGG 2 cut(s) 906, 1482
MspR9I CCNGG 4 cut(s) 354, 906, 1121, 1482
Mva1269I GAATGC 2 cut(s) 931, 1344
MvaI CCWGG 2 cut(s) 354, 1121
MwoI GCNNNNNNNGC 9 cut(s) 26, 35, 290, 299, 450, 1325, 1341, 1350, 1467
NciI CCSGG 2 cut(s) 906, 1482
NcoI CCATGG 2 cut(s) 66, 329
NdeI CATATG 1 cut(s) 772
NdeII GATC 2 cut(s) 85, 1608
NlaIV GGNNCC 5 cut(s) 845, 846, 1152, 1153, 1296
NmuCI GTSAC 2 cut(s) 91, 1501
NsiI ATGCAT 2 cut(s) 455, 841
NspI RCATGY 2 cut(s) 46, 453
OliI CACNNNNGTG 1 cut(s) 1499
PciI ACATGT 1 cut(s) 42
PctI GAATGC 2 cut(s) 931, 1344
PfeI GAWTC 5 cut(s) 155, 192, 409, 805, 1603
PflFI GACNNNGTC 2 cut(s) 895, 1482
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 6 cut(s) 99, 232, 283, 1012, 1204, 1288
PpuMI RGGWCCY 1 cut(s) 844
PscI ACATGT 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 844
Psp6I CCWGG 2 cut(s) 352, 1119
PspFI CCCAGC 1 cut(s) 1397
PspGI CCWGG 2 cut(s) 352, 1119
PspN4I GGNNCC 5 cut(s) 845, 846, 1152, 1153, 1296
PspOMI GGGCCC 1 cut(s) 1150
PspPI GGNCC 5 cut(s) 553, 844, 1150, 1151, 1295
PspPPI RGGWCCY 1 cut(s) 844
PstNI CAGNNNCTG 2 cut(s) 359, 731
PsyI GACNNNGTC 2 cut(s) 895, 1482
PvuII CAGCTG 1 cut(s) 983
RsaI GTAC 4 cut(s) 819, 1102, 1214, 1531
RsaNI GTAC 4 cut(s) 818, 1101, 1213, 1530
RseI CAYNNNNRTG 3 cut(s) 216, 1499, 1525
SaqAI TTAA 4 cut(s) 336, 423, 569, 882
SatI GCNGC 6 cut(s) 98, 231, 282, 1011, 1203, 1287
Sau3AI GATC 2 cut(s) 85, 1608
Sau96I GGNCC 5 cut(s) 553, 844, 1150, 1151, 1295
ScrFI CCNGG 4 cut(s) 354, 906, 1121, 1482
SduI GDGCHC 2 cut(s) 913, 1154
SfaNI GCATC 5 cut(s) 431, 497, 999, 1189, 1396
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 2 cut(s) 844, 1295
SmiMI CAYNNNNRTG 3 cut(s) 216, 1499, 1525
SpeI ACTAGT 1 cut(s) 341
Sse9I AATT 8 cut(s) 8, 225, 308, 460, 544, 580, 1161, 1473
SsiI CCGC 1 cut(s) 1351
SspI AATATT 2 cut(s) 427, 1114
SspMI CTAG 4 cut(s) 264, 275, 342, 416
StyD4I CCNGG 4 cut(s) 352, 904, 1119, 1480
StyI CCWWGG 3 cut(s) 66, 285, 329
TaaI ACNGT 5 cut(s) 26, 631, 1465, 1498, 1539
TaqI TCGA 1 cut(s) 1449
TasI AATT 8 cut(s) 8, 225, 308, 460, 544, 580, 1161, 1473
TatI WGTACW 1 cut(s) 1212
TfiI GAWTC 5 cut(s) 155, 192, 409, 805, 1603
Tru1I TTAA 4 cut(s) 336, 423, 569, 882
Tru9I TTAA 4 cut(s) 336, 423, 569, 882
TscAI CASTG 5 cut(s) 139, 489, 655, 1468, 1503
TseFI GTSAC 2 cut(s) 91, 1501
TseI GCWGC 6 cut(s) 97, 230, 281, 1010, 1202, 1286
Tsp45I GTSAC 2 cut(s) 91, 1501
TspDTI ATGAA 7 cut(s) 176, 492, 551, 789, 1098, 1154, 1223
TspGWI ACGGA 3 cut(s) 515, 1180, 1590
TspRI CASTG 5 cut(s) 139, 489, 655, 1468, 1503
Tth111I GACNNNGTC 2 cut(s) 895, 1482
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 2 cut(s) 844, 1295
XapI RAATTY 2 cut(s) 460, 544
XceI RCATGY 2 cut(s) 46, 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 1021
XspI CTAG 4 cut(s) 264, 275, 342, 416
Zsp2I ATGCAT 2 cut(s) 455, 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.