Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_co8003062.1_g000001 Rmu_sc0002908.1_g000026 Rmu_sc0023758.1_g000002 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 359 |
| AciI | CCGC | 1 cut(s) | 1351 |
| AcoI | YGGCCR | 1 cut(s) | 704 |
| AcsI | RAATTY | 2 cut(s) | 460, 544 |
| AcuI | CTGAAG | 1 cut(s) | 504 |
| AfaI | GTAC | 4 cut(s) | 819, 1102, 1214, 1531 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 56, 359 |
| AflIII | ACRYGT | 1 cut(s) | 42 |
| AgsI | TTSAA | 3 cut(s) | 1054, 1138, 1393 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 850 |
| AhlI | ACTAGT | 1 cut(s) | 341 |
| AjnI | CCWGG | 2 cut(s) | 352, 1119 |
| AleI | CACNNNNGTG | 1 cut(s) | 1499 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1255, 1287 |
| Alw21I | GWGCWC | 1 cut(s) | 913 |
| Alw26I | GTCTC | 3 cut(s) | 51, 903, 1041 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 359, 731 |
| AoxI | GGCC | 3 cut(s) | 553, 704, 1150 |
| ApaI | GGGCCC | 1 cut(s) | 1154 |
| ApeKI | GCWGC | 6 cut(s) | 97, 230, 281, 1010, 1202, 1286 |
| ApoI | RAATTY | 2 cut(s) | 460, 544 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 122, 154 |
| AspLEI | GCGC | 2 cut(s) | 1344, 1616 |
| AspS9I | GGNCC | 5 cut(s) | 553, 844, 1150, 1151, 1295 |
| AsuC2I | CCSGG | 2 cut(s) | 906, 1482 |
| AsuHPI | GGTGA | 5 cut(s) | 775, 969, 1324, 1340, 1513 |
| AvaII | GGWCC | 2 cut(s) | 844, 1295 |
| AxyI | CCTNAGG | 1 cut(s) | 1174 |
| BaeGI | GKGCMC | 1 cut(s) | 1154 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1536, 1569 |
| BalI | TGGCCA | 1 cut(s) | 706 |
| BanII | GRGCYC | 1 cut(s) | 1154 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 914, 946 |
| BauI | CACGAG | 1 cut(s) | 1275 |
| Bbv12I | GWGCWC | 1 cut(s) | 913 |
| BbvI | GCAGC | 6 cut(s) | 84, 242, 268, 1022, 1189, 1273 |
| BccI | CCATC | 3 cut(s) | 668, 715, 1454 |
| BceAI | ACGGC | 2 cut(s) | 509, 540 |
| BciT130I | CCWGG | 2 cut(s) | 354, 1121 |
| BclI | TGATCA | 1 cut(s) | 85 |
| BcnI | CCSGG | 2 cut(s) | 906, 1482 |
| BcoDI | GTCTC | 3 cut(s) | 51, 903, 1041 |
| BcuI | ACTAGT | 1 cut(s) | 341 |
| BfaI | CTAG | 4 cut(s) | 264, 275, 342, 416 |
| BfmI | CTRYAG | 1 cut(s) | 657 |
| BisI | GCNGC | 6 cut(s) | 98, 231, 282, 1011, 1203, 1287 |
| BlsI | GCNGC | 6 cut(s) | 99, 232, 283, 1012, 1204, 1288 |
| Bme1390I | CCNGG | 4 cut(s) | 354, 906, 1121, 1482 |
| Bme18I | GGWCC | 2 cut(s) | 844, 1295 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 850 |
| BmgT120I | GGNCC | 5 cut(s) | 553, 844, 1150, 1151, 1295 |
| BmiI | GGNNCC | 5 cut(s) | 845, 846, 1152, 1153, 1296 |
| BmrFI | CCNGG | 4 cut(s) | 354, 906, 1121, 1482 |
| BmrI | ACTGGG | 2 cut(s) | 1316, 1437 |
| BmsI | GCATC | 5 cut(s) | 431, 497, 999, 1189, 1396 |
| BmuI | ACTGGG | 2 cut(s) | 1316, 1437 |
| Bpu10I | CCTNAGC | 2 cut(s) | 206, 1290 |
| BpuMI | CCSGG | 2 cut(s) | 906, 1482 |
| BsaJI | CCNNGG | 4 cut(s) | 66, 285, 329, 1573 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 207, 237, 883, 913, 1170, 1200, 1255, 1285 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 56, 359 |
| Bse1I | ACTGG | 4 cut(s) | 139, 240, 1311, 1432 |
| Bse21I | CCTNAGG | 1 cut(s) | 1174 |
| BseBI | CCWGG | 2 cut(s) | 354, 1121 |
| BseDI | CCNNGG | 4 cut(s) | 66, 285, 329, 1573 |
| BseGI | GGATG | 5 cut(s) | 446, 562, 990, 1168, 1411 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 56, 359 |
| BseMII | CTCAG | 3 cut(s) | 42, 767, 1188 |
| BseNI | ACTGG | 4 cut(s) | 139, 240, 1311, 1432 |
| BseRI | GAGGAG | 2 cut(s) | 585, 891 |
| BseSI | GKGCMC | 1 cut(s) | 1154 |
| BseXI | GCAGC | 6 cut(s) | 84, 242, 268, 1022, 1189, 1273 |
| BseYI | CCCAGC | 1 cut(s) | 1397 |
| BsgI | GTGCAG | 1 cut(s) | 183 |
| BshFI | GGCC | 3 cut(s) | 555, 706, 1152 |
| BsiHKAI | GWGCWC | 1 cut(s) | 913 |
| BsiSI | CCGG | 2 cut(s) | 906, 1482 |
| BslFI | GGGAC | 1 cut(s) | 857 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 56, 359 |
| BsmAI | GTCTC | 3 cut(s) | 51, 903, 1041 |
| BsmFI | GGGAC | 1 cut(s) | 857 |
| BsmI | GAATGC | 2 cut(s) | 931, 1344 |
| BsnI | GGCC | 3 cut(s) | 555, 706, 1152 |
| Bsp120I | GGGCCC | 1 cut(s) | 1150 |
| Bsp1286I | GDGCHC | 2 cut(s) | 913, 1154 |
| Bsp143I | GATC | 2 cut(s) | 85, 1608 |
| Bsp19I | CCATGG | 2 cut(s) | 66, 329 |
| BspACI | CCGC | 1 cut(s) | 1351 |
| BspANI | GGCC | 3 cut(s) | 555, 706, 1152 |
| BspCNI | CTCAG | 3 cut(s) | 43, 766, 1187 |
| BspLI | GGNNCC | 5 cut(s) | 845, 846, 1152, 1153, 1296 |
| BsrI | ACTGG | 4 cut(s) | 139, 240, 1311, 1432 |
| BssECI | CCNNGG | 4 cut(s) | 66, 285, 329, 1573 |
| BssMI | GATC | 2 cut(s) | 85, 1608 |
| BssSI | CACGAG | 1 cut(s) | 1275 |
| BssT1I | CCWWGG | 3 cut(s) | 66, 285, 329 |
| Bst2BI | CACGAG | 1 cut(s) | 1275 |
| Bst2UI | CCWGG | 2 cut(s) | 354, 1121 |
| Bst4CI | ACNGT | 5 cut(s) | 26, 631, 1465, 1498, 1539 |
| Bst6I | CTCTTC | 1 cut(s) | 1039 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 450 |
| BstC8I | GCNNGC | 3 cut(s) | 625, 938, 1560 |
| BstDEI | CTNAG | 5 cut(s) | 51, 206, 753, 1174, 1290 |
| BstDSI | CCRYGG | 3 cut(s) | 66, 329, 1573 |
| BstF5I | GGATG | 5 cut(s) | 446, 562, 990, 1168, 1411 |
| BstHHI | GCGC | 2 cut(s) | 1344, 1616 |
| BstKTI | GATC | 2 cut(s) | 88, 1611 |
| BstMAI | GTCTC | 3 cut(s) | 51, 903, 1041 |
| BstMBI | GATC | 2 cut(s) | 85, 1608 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 26, 35, 290, 299, 450, 1325, 1341, 1350, 1467 |
| BstNI | CCWGG | 2 cut(s) | 354, 1121 |
| BstNSI | RCATGY | 2 cut(s) | 46, 453 |
| BstSCI | CCNGG | 4 cut(s) | 352, 904, 1119, 1480 |
| BstSFI | CTRYAG | 1 cut(s) | 657 |
| BstSLI | GKGCMC | 1 cut(s) | 1154 |
| BstV1I | GCAGC | 6 cut(s) | 84, 242, 268, 1022, 1189, 1273 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 379 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1174 |
| BsuRI | GGCC | 3 cut(s) | 555, 706, 1152 |
| BtgI | CCRYGG | 3 cut(s) | 66, 329, 1573 |
| BtsCI | GGATG | 5 cut(s) | 446, 562, 990, 1168, 1411 |
| BtsI | GCAGTG | 1 cut(s) | 489 |
| BtsIMutI | CAGTG | 5 cut(s) | 132, 489, 648, 1461, 1503 |
| Cac8I | GCNNGC | 3 cut(s) | 625, 938, 1560 |
| CaiI | CAGNNNCTG | 2 cut(s) | 359, 731 |
| CfoI | GCGC | 2 cut(s) | 1344, 1616 |
| Cfr13I | GGNCC | 5 cut(s) | 553, 844, 1150, 1151, 1295 |
| Csp6I | GTAC | 4 cut(s) | 818, 1101, 1213, 1530 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 436, 471 |
| CviQI | GTAC | 4 cut(s) | 818, 1101, 1213, 1530 |
| DdeI | CTNAG | 5 cut(s) | 51, 206, 753, 1174, 1290 |
| DpnI | GATC | 2 cut(s) | 87, 1610 |
| DpnII | GATC | 2 cut(s) | 85, 1608 |
| DraI | TTTAAA | 1 cut(s) | 883 |
| DriI | GACNNNNNGTC | 1 cut(s) | 850 |
| EaeI | YGGCCR | 1 cut(s) | 704 |
| Eam1104I | CTCTTC | 1 cut(s) | 1039 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 850 |
| EarI | CTCTTC | 1 cut(s) | 1039 |
| Eco130I | CCWWGG | 3 cut(s) | 66, 285, 329 |
| Eco24I | GRGCYC | 1 cut(s) | 1154 |
| Eco32I | GATATC | 1 cut(s) | 1492 |
| Eco47I | GGWCC | 2 cut(s) | 844, 1295 |
| Eco57I | CTGAAG | 1 cut(s) | 504 |
| Eco81I | CCTNAGG | 1 cut(s) | 1174 |
| EcoO109I | RGGNCCY | 2 cut(s) | 844, 1151 |
| EcoRII | CCWGG | 2 cut(s) | 352, 1119 |
| EcoRV | GATATC | 1 cut(s) | 1492 |
| EcoT14I | CCWWGG | 3 cut(s) | 66, 285, 329 |
| EcoT22I | ATGCAT | 2 cut(s) | 455, 841 |
| EcoT38I | GRGCYC | 1 cut(s) | 1154 |
| ErhI | CCWWGG | 3 cut(s) | 66, 285, 329 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1087, 1119 |
| FaqI | GGGAC | 1 cut(s) | 857 |
| FauNDI | CATATG | 1 cut(s) | 772 |
| FbaI | TGATCA | 1 cut(s) | 85 |
| Fnu4HI | GCNGC | 6 cut(s) | 98, 231, 282, 1011, 1203, 1287 |
| FokI | GGATG | 5 cut(s) | 453, 549, 977, 1155, 1418 |
| FriOI | GRGCYC | 1 cut(s) | 1154 |
| Fsp4HI | GCNGC | 6 cut(s) | 98, 231, 282, 1011, 1203, 1287 |
| FspBI | CTAG | 4 cut(s) | 264, 275, 342, 416 |
| GlaI | GCGC | 2 cut(s) | 1343, 1615 |
| GluI | GCNGC | 6 cut(s) | 98, 231, 282, 1011, 1203, 1287 |
| GsaI | CCCAGC | 1 cut(s) | 1401 |
| HaeIII | GGCC | 3 cut(s) | 555, 706, 1152 |
| HapII | CCGG | 2 cut(s) | 906, 1482 |
| HhaI | GCGC | 2 cut(s) | 1344, 1616 |
| Hin6I | GCGC | 2 cut(s) | 1342, 1614 |
| HinP1I | GCGC | 2 cut(s) | 1342, 1614 |
| HindIII | AAGCTT | 1 cut(s) | 300 |
| HinfI | GANTC | 5 cut(s) | 155, 192, 409, 805, 1603 |
| HpaII | CCGG | 2 cut(s) | 906, 1482 |
| HphI | GGTGA | 5 cut(s) | 775, 969, 1324, 1340, 1513 |
| Hpy166II | GTNNAC | 1 cut(s) | 855 |
| Hpy188I | TCNGA | 3 cut(s) | 408, 756, 1608 |
| Hpy188III | TCNNGA | 8 cut(s) | 50, 465, 534, 716, 1176, 1277, 1487, 1600 |
| Hpy8I | GTNNAC | 1 cut(s) | 855 |
| Hpy99I | CGWCG | 1 cut(s) | 1074 |
| HpyAV | CCTTC | 4 cut(s) | 831, 1217, 1309, 1463 |
| HpyCH4III | ACNGT | 5 cut(s) | 26, 631, 1465, 1498, 1539 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 26, 35, 290, 299, 450, 1325, 1341, 1350, 1467 |
| HpyF3I | CTNAG | 5 cut(s) | 51, 206, 753, 1174, 1290 |
| HspAI | GCGC | 2 cut(s) | 1342, 1614 |
| KflI | GGGWCCC | 1 cut(s) | 844 |
| Ksp22I | TGATCA | 1 cut(s) | 85 |
| Kzo9I | GATC | 2 cut(s) | 85, 1608 |
| LmnI | GCTCC | 3 cut(s) | 278, 1027, 1555 |
| Lsp1109I | GCAGC | 6 cut(s) | 84, 242, 268, 1022, 1189, 1273 |
| LweI | GCATC | 5 cut(s) | 431, 497, 999, 1189, 1396 |
| MaeI | CTAG | 4 cut(s) | 264, 275, 342, 416 |
| MaeIII | GTNAC | 3 cut(s) | 91, 367, 1501 |
| MalI | GATC | 2 cut(s) | 87, 1610 |
| MboI | GATC | 2 cut(s) | 85, 1608 |
| MboII | GAAGA | 3 cut(s) | 694, 934, 1056 |
| MhlI | GDGCHC | 2 cut(s) | 913, 1154 |
| MlsI | TGGCCA | 1 cut(s) | 706 |
| MluCI | AATT | 8 cut(s) | 8, 225, 308, 460, 544, 580, 1161, 1473 |
| MluNI | TGGCCA | 1 cut(s) | 706 |
| Mox20I | TGGCCA | 1 cut(s) | 706 |
| Mph1103I | ATGCAT | 2 cut(s) | 455, 841 |
| MscI | TGGCCA | 1 cut(s) | 706 |
| MseI | TTAA | 4 cut(s) | 336, 423, 569, 882 |
| MslI | CAYNNNNRTG | 3 cut(s) | 216, 1499, 1525 |
| Msp20I | TGGCCA | 1 cut(s) | 706 |
| MspA1I | CMGCKG | 1 cut(s) | 983 |
| MspI | CCGG | 2 cut(s) | 906, 1482 |
| MspR9I | CCNGG | 4 cut(s) | 354, 906, 1121, 1482 |
| Mva1269I | GAATGC | 2 cut(s) | 931, 1344 |
| MvaI | CCWGG | 2 cut(s) | 354, 1121 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 26, 35, 290, 299, 450, 1325, 1341, 1350, 1467 |
| NciI | CCSGG | 2 cut(s) | 906, 1482 |
| NcoI | CCATGG | 2 cut(s) | 66, 329 |
| NdeI | CATATG | 1 cut(s) | 772 |
| NdeII | GATC | 2 cut(s) | 85, 1608 |
| NlaIV | GGNNCC | 5 cut(s) | 845, 846, 1152, 1153, 1296 |
| NmuCI | GTSAC | 2 cut(s) | 91, 1501 |
| NsiI | ATGCAT | 2 cut(s) | 455, 841 |
| NspI | RCATGY | 2 cut(s) | 46, 453 |
| OliI | CACNNNNGTG | 1 cut(s) | 1499 |
| PciI | ACATGT | 1 cut(s) | 42 |
| PctI | GAATGC | 2 cut(s) | 931, 1344 |
| PfeI | GAWTC | 5 cut(s) | 155, 192, 409, 805, 1603 |
| PflFI | GACNNNGTC | 2 cut(s) | 895, 1482 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 359 |
| PkrI | GCNGC | 6 cut(s) | 99, 232, 283, 1012, 1204, 1288 |
| PpuMI | RGGWCCY | 1 cut(s) | 844 |
| PscI | ACATGT | 1 cut(s) | 42 |
| Psp5II | RGGWCCY | 1 cut(s) | 844 |
| Psp6I | CCWGG | 2 cut(s) | 352, 1119 |
| PspFI | CCCAGC | 1 cut(s) | 1397 |
| PspGI | CCWGG | 2 cut(s) | 352, 1119 |
| PspN4I | GGNNCC | 5 cut(s) | 845, 846, 1152, 1153, 1296 |
| PspOMI | GGGCCC | 1 cut(s) | 1150 |
| PspPI | GGNCC | 5 cut(s) | 553, 844, 1150, 1151, 1295 |
| PspPPI | RGGWCCY | 1 cut(s) | 844 |
| PstNI | CAGNNNCTG | 2 cut(s) | 359, 731 |
| PsyI | GACNNNGTC | 2 cut(s) | 895, 1482 |
| PvuII | CAGCTG | 1 cut(s) | 983 |
| RsaI | GTAC | 4 cut(s) | 819, 1102, 1214, 1531 |
| RsaNI | GTAC | 4 cut(s) | 818, 1101, 1213, 1530 |
| RseI | CAYNNNNRTG | 3 cut(s) | 216, 1499, 1525 |
| SaqAI | TTAA | 4 cut(s) | 336, 423, 569, 882 |
| SatI | GCNGC | 6 cut(s) | 98, 231, 282, 1011, 1203, 1287 |
| Sau3AI | GATC | 2 cut(s) | 85, 1608 |
| Sau96I | GGNCC | 5 cut(s) | 553, 844, 1150, 1151, 1295 |
| ScrFI | CCNGG | 4 cut(s) | 354, 906, 1121, 1482 |
| SduI | GDGCHC | 2 cut(s) | 913, 1154 |
| SfaNI | GCATC | 5 cut(s) | 431, 497, 999, 1189, 1396 |
| SfcI | CTRYAG | 1 cut(s) | 657 |
| SinI | GGWCC | 2 cut(s) | 844, 1295 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 216, 1499, 1525 |
| SpeI | ACTAGT | 1 cut(s) | 341 |
| Sse9I | AATT | 8 cut(s) | 8, 225, 308, 460, 544, 580, 1161, 1473 |
| SsiI | CCGC | 1 cut(s) | 1351 |
| SspI | AATATT | 2 cut(s) | 427, 1114 |
| SspMI | CTAG | 4 cut(s) | 264, 275, 342, 416 |
| StyD4I | CCNGG | 4 cut(s) | 352, 904, 1119, 1480 |
| StyI | CCWWGG | 3 cut(s) | 66, 285, 329 |
| TaaI | ACNGT | 5 cut(s) | 26, 631, 1465, 1498, 1539 |
| TaqI | TCGA | 1 cut(s) | 1449 |
| TasI | AATT | 8 cut(s) | 8, 225, 308, 460, 544, 580, 1161, 1473 |
| TatI | WGTACW | 1 cut(s) | 1212 |
| TfiI | GAWTC | 5 cut(s) | 155, 192, 409, 805, 1603 |
| Tru1I | TTAA | 4 cut(s) | 336, 423, 569, 882 |
| Tru9I | TTAA | 4 cut(s) | 336, 423, 569, 882 |
| TscAI | CASTG | 5 cut(s) | 139, 489, 655, 1468, 1503 |
| TseFI | GTSAC | 2 cut(s) | 91, 1501 |
| TseI | GCWGC | 6 cut(s) | 97, 230, 281, 1010, 1202, 1286 |
| Tsp45I | GTSAC | 2 cut(s) | 91, 1501 |
| TspDTI | ATGAA | 7 cut(s) | 176, 492, 551, 789, 1098, 1154, 1223 |
| TspGWI | ACGGA | 3 cut(s) | 515, 1180, 1590 |
| TspRI | CASTG | 5 cut(s) | 139, 489, 655, 1468, 1503 |
| Tth111I | GACNNNGTC | 2 cut(s) | 895, 1482 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 359 |
| VpaK11BI | GGWCC | 2 cut(s) | 844, 1295 |
| XapI | RAATTY | 2 cut(s) | 460, 544 |
| XceI | RCATGY | 2 cut(s) | 46, 453 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1021 |
| XspI | CTAG | 4 cut(s) | 264, 275, 342, 416 |
| Zsp2I | ATGCAT | 2 cut(s) | 455, 841 |