Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025855.1

Orthogroup ID

OG0031538

Physical Location & Seq

Genomic Coordinates Reverse (-)

22539 .. 24591

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025855.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgtctgaaggagcagttgtgcagcgtaaggggcgcttcaaggtcacttcagcagaccttagtcccaagggttcttcaaatagcttctttagtcctgtttctctaggttcaagtagtccaccatcctcaaatgttacagctgccactgttctcccatcactacaatgcatgctgatgcaaaacacctcgcaaagggaggaaatagtaaaattgatcaaatatgttgaacagacctctggtatgcaaggagagataaccgatgtaagcaccagtgaccttttgcagatacctcctgcttcctgtagggagagagagttgcaatctctggtgattaatctgcaacagagtgttgggaatcttgttgaacaattacaaagacagaagatgaaaaatgcccagttagaaagacaattgaatgccttggccaacaaagacaagatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

147

Amino Acids

16.05

Weight (kDa)

9.03

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031538)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0024549.1_g000001 Rmu_sc0025855.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	423
AcuI	CTGAAG	2 cut(s)	27, 33
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	6 cut(s)	40, 78, 111, 227, 365, 415
AluBI	AGCT	2 cut(s)	84, 140
AluI	AGCT	2 cut(s)	84, 140
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	22, 140
AseI	ATTAAT	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	34, 127
BccI	CCATC	2 cut(s)	130, 163
BclI	TGATCA	1 cut(s)	213
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	37
BisI	GCNGC	2 cut(s)	23, 141
BlsI	GCNGC	2 cut(s)	24, 142
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	391
BoxI	GACNNNNGTC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	66, 420
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	270, 397
BseDI	CCNNGG	2 cut(s)	66, 420
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	270, 397
BseXI	GCAGC	2 cut(s)	34, 127
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	270, 397
BssECI	CCNNGG	2 cut(s)	66, 420
BssMI	GATC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	66, 420
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	59
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	172
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	34, 127
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	144, 277
Cac8I	GCNNGC	1 cut(s)	170
CfoI	GCGC	1 cut(s)	36
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	3 cut(s)	84, 140, 425
CviKI_1	RGCY	3 cut(s)	84, 140, 425
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	66, 420
Eco57I	CTGAAG	2 cut(s)	27, 33
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	66, 420
EcoT22I	ATGCAT	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	66, 420
FaeI	CATG	1 cut(s)	172
FaiI	YATR	4 cut(s)	170, 222, 242, 442
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	23, 141
FokI	GGATG	1 cut(s)	109
Fsp4HI	GCNGC	2 cut(s)	23, 141
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	23, 141
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	7 cut(s)	22, 168, 178, 244, 283, 319, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	7 cut(s)	108, 222, 283, 306, 311, 313, 410
Lsp1109I	GCAGC	2 cut(s)	34, 127
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	3 cut(s)	43, 133, 272
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	2 cut(s)	66, 394
MfeI	CAATTG	1 cut(s)	410
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	3 cut(s)	209, 368, 410
MluNI	TGGCCA	1 cut(s)	425
MnlI	CCTC	5 cut(s)	136, 190, 196, 244, 300
Mox20I	TGGCCA	1 cut(s)	425
Mph1103I	ATGCAT	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	2 cut(s)	163, 173
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	43, 272
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	24, 142
PshAI	GACNNNNGTC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	333
PvuII	CAGCTG	1 cut(s)	140
RseI	CAYNNNNRTG	2 cut(s)	163, 173
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	2 cut(s)	23, 141
Sau3AI	GATC	1 cut(s)	213
SetI	ASST	9 cut(s)	45, 60, 86, 109, 142, 188, 236, 279, 292
SfaNI	GCATC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	301
SmiMI	CAYNNNNRTG	2 cut(s)	163, 173
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	3 cut(s)	209, 368, 410
SspMI	CTAG	1 cut(s)	104
StyI	CCWWGG	2 cut(s)	66, 420
TaaI	ACNGT	1 cut(s)	148
TasI	AATT	3 cut(s)	209, 368, 410
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	2 cut(s)	151, 277
TseFI	GTSAC	2 cut(s)	43, 272
TseI	GCWGC	2 cut(s)	22, 140
Tsp45I	GTSAC	2 cut(s)	43, 272
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	151, 277
VspI	ATTAAT	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	190
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.