Rmu_sc0030753.1_g000001

glycerol-3-phosphate dehydrogenase NAD(

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030753.1
Physical Location & Seq
Reverse (-)
476 .. 880
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030753.1_g000001.1.cds

Sequence Viewer

Length: 336 bp
atgagtgctaccgcggatggagtgaagtactcaccggagtggttggttaagcactcgaatgtttctgttgaggagaagcttgacgagcttcggcgtttgatgggcaaagctgaagacacttatggacacttgagacagaaggtggtggtgagaatatggagaagatctggaaggtctgtggatagagccacagctgaacatttgtttgaagtgatcaatgcaagggatgatgtgttgaggaggctgattaggcggtgcgcttacttgaagtatgtcgaggggagattaggtgaccggatactttttgcggatgagatattgagagataccagctga

Protein Analysis

111

Amino Acids

12.97

Weight (kDa)

9.46

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025512)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001543.1_g000006 Rmu_sc0030753.1_g000001
rosa_roxburghii Rroxscaffold_4G00328650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 12, 14, 253, 308
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 1 cut(s) 29
AgsI TTSAA 2 cut(s) 209, 268
AleI CACNNNNGTG 1 cut(s) 37
AluBI AGCT 5 cut(s) 79, 88, 110, 194, 333
AluI AGCT 5 cut(s) 79, 88, 110, 194, 333
Alw26I GTCTC 1 cut(s) 127
AspLEI GCGC 1 cut(s) 260
AsuHPI GGTGA 3 cut(s) 24, 160, 302
BbsI GAAGAC 1 cut(s) 120
BccI CCATC 2 cut(s) 11, 94
BciVI GTATCC 1 cut(s) 291
BclI TGATCA 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 127
BfuI GTATCC 1 cut(s) 291
BglII AGATCT 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 12
BsaWI WCCGGW 2 cut(s) 34, 294
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 3 cut(s) 22, 232, 316
BseRI GAGGAG 2 cut(s) 86, 253
Bsh1236I CGCG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 35, 295
BsmAI GTCTC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 164, 213
BspACI CCGC 4 cut(s) 12, 14, 253, 308
BspFNI CGCG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 164, 213
BstDSI CCRYGG 1 cut(s) 12
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 3 cut(s) 22, 232, 316
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 2 cut(s) 167, 216
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 2 cut(s) 164, 213
BstMWI GCNNNNNNNGC 2 cut(s) 85, 250
BstPI GGTNACC 1 cut(s) 290
BstUI CGCG 1 cut(s) 14
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BsuI GTATCC 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 3 cut(s) 22, 232, 316
CfoI GCGC 1 cut(s) 260
Cfr42I CCGCGG 1 cut(s) 15
Csp6I GTAC 1 cut(s) 28
CviJI RGCY 7 cut(s) 79, 88, 110, 188, 194, 244, 333
CviKI_1 RGCY 7 cut(s) 79, 88, 110, 188, 194, 244, 333
CviQI GTAC 1 cut(s) 28
DpnI GATC 2 cut(s) 166, 215
DpnII GATC 2 cut(s) 164, 213
Eco57I CTGAAG 1 cut(s) 132
Eco91I GGTNACC 1 cut(s) 290
EcoO65I GGTNACC 1 cut(s) 290
FaiI YATR 3 cut(s) 123, 157, 273
FbaI TGATCA 1 cut(s) 213
FokI GGATG 3 cut(s) 29, 239, 323
GlaI GCGC 1 cut(s) 259
HapII CCGG 2 cut(s) 35, 295
HhaI GCGC 1 cut(s) 260
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 77
HpaII CCGG 2 cut(s) 35, 295
HphI GGTGA 3 cut(s) 24, 160, 302
Hpy188III TCNNGA 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 133, 165
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 250
HspAI GCGC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 213
KspI CCGCGG 1 cut(s) 15
Kzo9I GATC 2 cut(s) 164, 213
LpnPI CCDG 3 cut(s) 48, 153, 308
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 166, 215
MboI GATC 2 cut(s) 164, 213
MboII GAAGA 2 cut(s) 125, 174
MflI RGATCY 1 cut(s) 164
MnlI CCTC 4 cut(s) 64, 231, 234, 271
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 2 cut(s) 37, 57
MspA1I CMGCKG 3 cut(s) 14, 194, 333
MspI CCGG 2 cut(s) 35, 295
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 85, 250
NdeII GATC 2 cut(s) 164, 213
NmuCI GTSAC 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 37
PspEI GGTNACC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 164
PvuII CAGCTG 2 cut(s) 194, 333
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 2 cut(s) 37, 57
SacII CCGCGG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 2 cut(s) 164, 213
ScaI AGTACT 1 cut(s) 29
SetI ASST 8 cut(s) 81, 90, 112, 144, 176, 196, 292, 335
Sfr303I CCGCGG 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 15
SmiMI CAYNNNNRTG 2 cut(s) 37, 57
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SsiI CCGC 4 cut(s) 12, 14, 253, 308
TaqI TCGA 2 cut(s) 56, 276
TatI WGTACW 1 cut(s) 27
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.