Rmu_sc0033311.1_g000001

of pyruvate dehydrogenase complex

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033311.1
Physical Location & Seq
Reverse (-)
1 .. 704
704 bp
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UTR
Exon/CDS
Intron
Rmu_sc0033311.1_g000001.1.cds

Sequence Viewer

Length: 195 bp
atgaaatggatcaggcctgcatctttgtccatgctcaccggagtccagtataaattttcatacctcaagccttggacgggtgtcaagcattactcaactgccgatcctttgtatgctgtccttgatatgcctgctttgtctcctacaatgagtcaaggtaacattgctaaatggaggaagaaagagggagataag

Protein Analysis

65

Amino Acids

7.42

Weight (kDa)

9.85

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031006)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0033311.1_g000001 Rmu_ssc0000124.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 17, 98
AcsI RAATTY 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 2 cut(s) 17, 98
AoxI GGCC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 144
BmsI GCATC 1 cut(s) 29
BoxI GACNNNNGTC 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 46
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 2 cut(s) 9, 103
BspANI GGCC 1 cut(s) 16
BspPI GGATC 2 cut(s) 17, 98
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 2 cut(s) 9, 103
BssT1I CCWWGG 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 18, 132
BstKTI GATC 2 cut(s) 12, 106
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 2 cut(s) 9, 103
BstPAI GACNNNNGTC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 18, 132
CviAII CATG 1 cut(s) 31
CviJI RGCY 2 cut(s) 16, 70
CviKI_1 RGCY 2 cut(s) 16, 70
DpnI GATC 2 cut(s) 11, 105
DpnII GATC 2 cut(s) 9, 103
Eco130I CCWWGG 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 1 cut(s) 34
FaiI YATR 5 cut(s) 32, 51, 61, 114, 128
FatI CATG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 39
Hin1II CATG 1 cut(s) 34
HinfI GANTC 2 cut(s) 42, 151
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 20
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 2 cut(s) 9, 103
LpnPI CCDG 4 cut(s) 30, 52, 59, 144
LweI GCATC 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 11, 105
MboI GATC 2 cut(s) 9, 103
MboII GAAGA 1 cut(s) 190
MluCI AATT 1 cut(s) 53
MlyI GAGTC 2 cut(s) 51, 160
MnlI CCTC 3 cut(s) 74, 168, 178
MspI CCGG 1 cut(s) 39
NdeII GATC 2 cut(s) 9, 103
NlaIII CATG 1 cut(s) 34
PceI AGGCCT 1 cut(s) 16
PleI GAGTC 2 cut(s) 50, 159
PpsI GAGTC 2 cut(s) 50, 159
PshAI GACNNNNGTC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 9, 103
SchI GAGTC 2 cut(s) 51, 160
SetI ASST 2 cut(s) 66, 160
SfaNI GCATC 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 53
SseBI AGGCCT 1 cut(s) 16
StuI AGGCCT 1 cut(s) 16
StyI CCWWGG 1 cut(s) 71
TasI AATT 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 17, 48
XapI RAATTY 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.