Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000124.1

Orthogroup ID

OG0031006

Physical Location & Seq

Genomic Coordinates Reverse (-)

32794 .. 39537

Gene Structure 6744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000124.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggcgctctcacggtttcgacaccctgtgatctcacgcgccccttctctcttccgagctcgccttctctcctcgtccaccagatcactcactcgaagttccagtgtgcagaatttgactgtgggaggtgatagtgctcttttaaggcctgcatctttgtccatgctcaccggagtccagtataaattttcatacctcaagccttggacgggtgtcaagcattactcaactgccgatcctttgtatgctgtccttgatatgcctgctttgtctcctacaatgagtcaaggtaacattgctaaatggaggaagaaagagggagataaggccagtatccttgctgtaggcagaggcaacaaagttgttgaaccagtaattggaagtgatggaattgaaaggccagcagttgtcacgaaaatgaacttgacgttatcggcggatcatcgtgtttttgatggcaaagttggaggtacattcctctcagctttacaatcaaacttcagtgacatccgaagacttcttttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0045254 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

175

Amino Acids

19.03

Weight (kDa)

10.64

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031006)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0033311.1_g000001 Rmu_ssc0000124.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	2 cut(s)	230, 447
AcsI	RAATTY	2 cut(s)	112, 185
AcuI	CTGAAG	1 cut(s)	484
AdeI	CACNNNGTG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	209, 377
AgsI	TTSAA	2 cut(s)	368, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	2 cut(s)	59, 485
AluI	AGCT	2 cut(s)	59, 485
Alw21I	GWGCWC	2 cut(s)	61, 139
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	230, 447
AoxI	GGCC	3 cut(s)	146, 327, 398
ApoI	RAATTY	2 cut(s)	112, 185
AspLEI	GCGC	2 cut(s)	7, 41
AsuHPI	GGTGA	2 cut(s)	140, 160
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	520
Bbv12I	GWGCWC	2 cut(s)	61, 139
BccI	CCATC	2 cut(s)	380, 449
BciVI	GTATCC	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	344
BmsI	GCATC	1 cut(s)	161
BoxI	GACNNNNGTC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 377
Bse1I	ACTGG	4 cut(s)	102, 178, 330, 371
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	209, 377
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	4 cut(s)	102, 178, 330, 371
BseRI	GAGGAG	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	3 cut(s)	148, 329, 400
BsiHKAI	GWGCWC	2 cut(s)	61, 139
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	209, 377
BsmAI	GTCTC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	148, 329, 400
Bsp1286I	GDGCHC	2 cut(s)	61, 139
Bsp143I	GATC	4 cut(s)	30, 83, 235, 439
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	3 cut(s)	148, 329, 400
BspCNI	CTCAG	1 cut(s)	494
BspFNI	CGCG	1 cut(s)	39
BspPI	GGATC	2 cut(s)	230, 447
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	4 cut(s)	102, 178, 330, 371
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	4 cut(s)	30, 83, 235, 439
BssT1I	CCWWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	15, 121
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	4 cut(s)	61, 150, 264, 402
BstDEI	CTNAG	1 cut(s)	481
BstF5I	GGATG	1 cut(s)	507
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 41
BstKTI	GATC	4 cut(s)	33, 86, 238, 442
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	4 cut(s)	30, 83, 235, 439
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	520
BsuI	GTATCC	1 cut(s)	344
BsuRI	GGCC	3 cut(s)	148, 329, 400
BtsCI	GGATG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	109, 508
Cac8I	GCNNGC	4 cut(s)	61, 150, 264, 402
CfoI	GCGC	2 cut(s)	7, 41
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	6 cut(s)	59, 148, 202, 329, 400, 485
CviKI_1	RGCY	6 cut(s)	59, 148, 202, 329, 400, 485
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	1 cut(s)	481
DpnI	GATC	4 cut(s)	32, 85, 237, 441
DpnII	GATC	4 cut(s)	30, 83, 235, 439
DraIII	CACNNNGTG	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	484
EcoICRI	GAGCTC	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	1 cut(s)	166
FaiI	YATR	5 cut(s)	164, 183, 193, 246, 260
FatI	CATG	1 cut(s)	162
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	61
GlaI	GCGC	2 cut(s)	6, 40
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	148, 329, 400
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	2 cut(s)	7, 41
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	2 cut(s)	5, 39
HinP1I	GCGC	2 cut(s)	5, 39
HinfI	GANTC	2 cut(s)	174, 283
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	140, 160
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	56, 512
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	2 cut(s)	54, 74
HpyCH4III	ACNGT	2 cut(s)	15, 121
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	2 cut(s)	109, 152
HpyF3I	CTNAG	1 cut(s)	481
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	2 cut(s)	5, 39
Kzo9I	GATC	4 cut(s)	30, 83, 235, 439
LweI	GCATC	1 cut(s)	161
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	3 cut(s)	290, 409, 503
MalI	GATC	4 cut(s)	32, 85, 237, 441
MboI	GATC	4 cut(s)	30, 83, 235, 439
MboII	GAAGA	3 cut(s)	43, 322, 525
MhlI	GDGCHC	2 cut(s)	61, 139
MluCI	AATT	4 cut(s)	112, 185, 375, 390
MlyI	GAGTC	2 cut(s)	183, 292
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	8 cut(s)	82, 119, 206, 300, 310, 344, 461, 488
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	39
NdeII	GATC	4 cut(s)	30, 83, 235, 439
NlaIII	CATG	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	409, 503
PceI	AGGCCT	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	377
PleI	GAGTC	2 cut(s)	182, 291
PpsI	GAGTC	2 cut(s)	182, 291
PshAI	GACNNNNGTC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	61
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	143
Sau3AI	GATC	4 cut(s)	30, 83, 235, 439
SchI	GAGTC	2 cut(s)	183, 292
SduI	GDGCHC	2 cut(s)	61, 139
SetI	ASST	7 cut(s)	61, 130, 198, 292, 431, 472, 487
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	112, 185, 375, 390
SseBI	AGGCCT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	437
SstI	GAGCTC	1 cut(s)	61
StuI	AGGCCT	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	15, 121
TaiI	ACGT	1 cut(s)	431
TaqI	TCGA	2 cut(s)	19, 94
TasI	AATT	4 cut(s)	112, 185, 375, 390
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	2 cut(s)	109, 508
TseFI	GTSAC	2 cut(s)	409, 503
Tsp45I	GTSAC	2 cut(s)	409, 503
TspDTI	ATGAA	2 cut(s)	180, 434
TspRI	CASTG	2 cut(s)	109, 508
Van91I	CCANNNNNTGG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	112, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.