Rmu_sc0034721.1_g000001

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034721.1
OG0024701
Physical Location & Seq
Reverse (-)
112 .. 689
578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034721.1_g000001.1.cds

Sequence Viewer

Length: 303 bp
atggcgagggcagttgaaggtcaccgtcgctttcttggtcacaggaagacaatatctccagacagaaaagcccttgttcgtcagattgacaaacttgagcagggaaccctgaaagaaggaaaaaatttatcaaatcgagttattgaattgcacaggagacggcagggcaacccgcggaagagaaaaggtcccatttcaggaaccaggggtacagaaaggttccgttcagaagaacccttctatgttaaccctttaccggattgtttgtgtaagaaggaattgccgatgctagcaactgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

100

Amino Acids

11.6

Weight (kDa)

10.7

Isoelectric Point (pI)

59.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024701)

Species Orthologous Gene IDs
pyrus_communis pycom15g33510
rosa_multiflora Rmu_sc0034720.1_g000001 Rmu_sc0034721.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 175
AciI CCGC 2 cut(s) 173, 175
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 197, 256
AgsI TTSAA 2 cut(s) 17, 146
AjnI CCWGG 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 14
AsuNHI GCTAGC 1 cut(s) 289
AvaII GGWCC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 4 cut(s) 106, 190, 202, 221
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 276
BmtI GCTAGC 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 173, 204
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 256
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 2 cut(s) 173, 204
BseLI CCNNNNNNNGG 2 cut(s) 197, 256
BseMII CTCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 197, 256
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 174
BspACI CCGC 2 cut(s) 173, 175
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 4 cut(s) 106, 190, 202, 221
BspOI GCTAGC 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 173, 204
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 173
BstEII GGTNACC 1 cut(s) 20
BstFNI CGCG 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 203
BstUI CGCG 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 188
Cfr42I CCGCGG 1 cut(s) 176
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 1 cut(s) 71
CviKI_1 RGCY 1 cut(s) 71
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 203
Esp3I CGTCTC 1 cut(s) 151
FaiI YATR 1 cut(s) 243
FaqI GGGAC 1 cut(s) 174
FauI CCCGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 42
HapII CCGG 1 cut(s) 257
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 84, 229
Hpy188III TCNNGA 2 cut(s) 59, 198
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 4 cut(s) 11, 110, 247, 268
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 297
KspAI GTTAAC 1 cut(s) 247
KspI CCGCGG 1 cut(s) 176
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 2 cut(s) 20, 38
MboII GAAGA 3 cut(s) 58, 190, 242
MluCI AATT 3 cut(s) 124, 146, 278
MseI TTAA 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 1 cut(s) 175
NheI GCTAGC 1 cut(s) 289
NlaIV GGNNCC 4 cut(s) 106, 190, 202, 221
NmuCI GTSAC 2 cut(s) 20, 38
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 203
PspEI GGTNACC 1 cut(s) 20
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 4 cut(s) 106, 190, 202, 221
PspPI GGNCC 1 cut(s) 188
PspPPI RGGWCCY 1 cut(s) 188
PsrI GAACNNNNNNTAC 2 cut(s) 193, 225
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SacII CCGCGG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 205
SetI ASST 3 cut(s) 22, 190, 221
SfaNI GCATC 1 cut(s) 276
Sfr303I CCGCGG 1 cut(s) 176
SgrBI CCGCGG 1 cut(s) 176
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 3 cut(s) 124, 146, 278
SsiI CCGC 2 cut(s) 173, 175
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 136
TasI AATT 3 cut(s) 124, 146, 278
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 2 cut(s) 20, 38
Tsp45I GTSAC 2 cut(s) 20, 38
TspGWI ACGGA 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 124
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.