Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035849.1

Orthogroup ID

OG0031581

Physical Location & Seq

Genomic Coordinates Reverse (-)

3155 .. 4967

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035849.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgcgagaagatggcgatgcatctgataaacctcttgatattgctgttttatctagaatgaaacagttcagggcaatgaacaaactcaagaaagttgcattgaaggtaattgcagaaaatctttctgaagaggaaatcataggcttgaaggaaatgtttaaatcaatggacacagataacagtgggacaattacatatgaagagttaaaagcgggccttccaaagctgggtaccaagctttctgagtctgaagtgagacagttgatggaagcggctgatgttgatggaaatggaacaattgattacattgagtttataaccgctacaatgcacatgaacagaatggatagagaggaccatttatacacagcctttgaatattttgacaaggacaagagcgggtacatcacaatggaagaattggagcaagcacttaagaagtataatatgggtgatgaacaaacgattaaggatatcatcgcagaagttgacacagaccttgatggaaggatcaactatgatgagtttgttgccatgatgaggaaaggaaatcctgagttggtcacaaacagaagaagaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

194

Amino Acids

22.31

Weight (kDa)

4.82

Isoelectric Point (pI)

26.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031581)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0035849.1_g000002
rosa_samantha	Rh7DG157400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	317
Acc65I	GGTACC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	399
AciI	CCGC	4 cut(s)	212, 272, 321, 399
AclWI	GGATC	1 cut(s)	518
AcuI	CTGAAG	2 cut(s)	147, 270
AfaI	GTAC	2 cut(s)	232, 404
AfiI	CCNNNNNNNGG	2 cut(s)	227, 540
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	103, 148, 377
AluBI	AGCT	2 cut(s)	226, 238
AluI	AGCT	2 cut(s)	226, 238
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	1 cut(s)	214
Asp700I	GAANNNNTTC	1 cut(s)	65
Asp718I	GGTACC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	214, 355
AsuHPI	GGTGA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	230
BccI	CCATC	4 cut(s)	5, 259, 278, 497
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	434
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	214, 355
BmiI	GGNNCC	1 cut(s)	232
BmsI	GCATC	2 cut(s)	7, 29
BpuEI	CTTGAG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 540
Bse3DI	GCAATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	227, 540
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	234, 546
BseYI	CCCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	227, 540
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	510
BspACI	CCGC	4 cut(s)	212, 272, 321, 399
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	235, 547
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	81
BssMI	GATC	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	66, 182, 261
Bst6I	CTCTTC	2 cut(s)	123, 195
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	214, 429
BstDEI	CTNAG	2 cut(s)	243, 555
BstKTI	GATC	1 cut(s)	513
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	216
BtgZI	GCGATG	2 cut(s)	30, 463
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	214, 429
Cfr13I	GGNCC	2 cut(s)	214, 355
Csp6I	GTAC	2 cut(s)	231, 403
CviAII	CATG	2 cut(s)	334, 535
CviJI	RGCY	6 cut(s)	144, 216, 226, 238, 275, 371
CviKI_1	RGCY	6 cut(s)	144, 216, 226, 238, 275, 371
CviQI	GTAC	2 cut(s)	231, 403
DdeI	CTNAG	2 cut(s)	243, 555
DpnI	GATC	1 cut(s)	512
DpnII	GATC	1 cut(s)	510
DraI	TTTAAA	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	123, 195
EarI	CTCTTC	2 cut(s)	123, 195
Eco32I	GATATC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	147, 270
EcoRV	GATATC	1 cut(s)	475
EcoT22I	ATGCAT	1 cut(s)	22
FaeI	CATG	2 cut(s)	337, 538
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	2 cut(s)	333, 534
FauI	CCCGC	2 cut(s)	205, 392
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	1 cut(s)	273
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	337, 538
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	245
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	4 cut(s)	25, 127, 244, 250
Hpy188III	TCNNGA	4 cut(s)	35, 54, 88, 554
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	4 cut(s)	97, 142, 227, 501
HpyCH4III	ACNGT	3 cut(s)	66, 182, 261
HpyCH4V	TGCA	4 cut(s)	20, 98, 113, 331
HpyF3I	CTNAG	2 cut(s)	243, 555
Hsp92II	CATG	2 cut(s)	337, 538
KpnI	GGTACC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	510
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	3 cut(s)	55, 212, 567
LweI	GCATC	2 cut(s)	7, 29
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	1 cut(s)	512
MbiI	CCGCTC	1 cut(s)	399
MboI	GATC	1 cut(s)	510
MboII	GAAGA	5 cut(s)	20, 140, 212, 428, 585
MfeI	CAATTG	1 cut(s)	297
MluCI	AATT	4 cut(s)	108, 189, 297, 419
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	4 cut(s)	42, 124, 346, 534
Mph1103I	ATGCAT	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	4 cut(s)	159, 206, 435, 468
MslI	CAYNNNNRTG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	434
MunI	CAATTG	1 cut(s)	297
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	1 cut(s)	510
NlaIII	CATG	2 cut(s)	337, 538
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	562
NsiI	ATGCAT	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PsiI	TTATAA	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	214, 355
RsaI	GTAC	2 cut(s)	232, 404
RsaNI	GTAC	2 cut(s)	231, 403
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	4 cut(s)	159, 206, 435, 468
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	510
Sau96I	GGNCC	2 cut(s)	214, 355
SchI	GAGTC	1 cut(s)	254
SetI	ASST	5 cut(s)	34, 108, 228, 240, 501
SfaNI	GCATC	2 cut(s)	7, 29
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	86, 434
SmoI	CTYRAG	2 cut(s)	86, 434
Sse9I	AATT	4 cut(s)	108, 189, 297, 419
SsiI	CCGC	4 cut(s)	212, 272, 321, 399
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	1 cut(s)	54
TaaI	ACNGT	3 cut(s)	66, 182, 261
TasI	AATT	4 cut(s)	108, 189, 297, 419
TauI	GCSGC	1 cut(s)	275
Tru1I	TTAA	4 cut(s)	159, 206, 435, 468
Tru9I	TTAA	4 cut(s)	159, 206, 435, 468
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	562
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	5 cut(s)	74, 92, 213, 350, 471
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	355
XbaI	TCTAGA	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.