Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0031581

Physical Location & Seq

Genomic Coordinates Forward (+)

13648380 .. 13650954

Gene Structure 2575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG157400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCTTCGAGCTGATCCAAAGGAACGGCTTGCAGCAGTGGATGTCCTTAATCATCCATGGATGCGAGAAGATGGCGATGCATCTGATAAACCTCTTGATATTGCTGTTTTATCTAGAATGAAACAGTTCAGGGCAATGAACAAACTCAAGAAAGTTGCATTGAAGGTAATTGCAGAAAATCTTTCTGAAGAGGAAATCATAGGCTTGAAGGAAATGTTTAAATCAATGGACACAGATAACAGTGGAACAATTACATATGAAGAGTTAAAAGCGGGCCTTCCAAAGCTGGGTACCAAGCTTTCTGAGTCTGAAGTGAGACAGTTGATGGAAGCGGCTGATGTTGATGGAAATGGAACAATTGATTACATTGAGTTTATAACCGCTACAATGCACATGAACAGAATGGATAGAGAGGACCATTTATACACAGCCTTTGAATATTTTGACAAGGACAAGAGCGGGTACATCACAATGGAAGAATTGGAGCAAGCACTTAAGAAGTATAATATGGGTGATGAACAAACGATTAAGGATATCATCGCAGAAGTTGACACAGACCTTGATGGAAGGATCAACTATGATGAGTTTGTTGCCATGATGAGGAAAGGAAATCCTGAGTTGGTCACAAACAGAAGAAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

214

Amino Acids

24.63

Weight (kDa)

4.91

Isoelectric Point (pI)

25.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	69 - 129	2e-14	EF-hand domain pair
EF-hand_1	PF00036	69 - 95	4.3e-08	EF hand domain
EF-hand_6	PF13405	69 - 97	6.9e-07	EF-hand domain
EF-hand_8	PF13833	81 - 128	1e-06	EF-hand domain pair
EF-hand_7	PF13499	138 - 201	4.9e-17	EF-hand domain pair
EF-hand_6	PF13405	141 - 168	1.9e-07	EF-hand domain
EF-hand_1	PF00036	143 - 167	7.7e-07	EF hand domain
EF-hand_8	PF13833	153 - 202	9.5e-09	EF-hand domain pair
EF-hand_1	PF00036	176 - 202	2.6e-07	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031581)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0035849.1_g000002
rosa_samantha	Rh7DG157400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	459
AciI	CCGC	4 cut(s)	272, 332, 381, 459
AclWI	GGATC	2 cut(s)	8, 578
AcuI	CTGAAG	2 cut(s)	207, 330
AfaI	GTAC	2 cut(s)	292, 464
AfiI	CCNNNNNNNGG	2 cut(s)	287, 600
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	3 cut(s)	163, 208, 437
AluBI	AGCT	3 cut(s)	11, 286, 298
AluI	AGCT	3 cut(s)	11, 286, 298
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	8, 578
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	125
Asp718I	GGTACC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	274, 415
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	4 cut(s)	65, 319, 338, 557
BceAI	ACGGC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	114
BfrI	CTTAAG	1 cut(s)	494
BisI	GCNGC	2 cut(s)	33, 333
BlsI	GCNGC	2 cut(s)	34, 334
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	274, 415
BmiI	GGNNCC	1 cut(s)	292
BmsI	GCATC	3 cut(s)	51, 67, 89
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 600
Bse3DI	GCAATG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	3 cut(s)	46, 52, 66
BseLI	CCNNNNNNNGG	2 cut(s)	287, 600
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	294, 606
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	286
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	287, 600
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	13, 570
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	4 cut(s)	272, 332, 381, 459
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	2 cut(s)	295, 607
BspLI	GGNNCC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	8, 578
BspT107I	GGYRCC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	494
BsrBI	CCGCTC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	2 cut(s)	13, 570
BssT1I	CCWWGG	1 cut(s)	56
Bst4CI	ACNGT	3 cut(s)	126, 242, 321
Bst6I	CTCTTC	2 cut(s)	183, 255
BstAFI	CTTAAG	1 cut(s)	494
BstC8I	GCNNGC	3 cut(s)	30, 274, 489
BstDEI	CTNAG	2 cut(s)	303, 615
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	46, 52, 66
BstKTI	GATC	2 cut(s)	16, 573
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	2 cut(s)	13, 570
BstV1I	GCAGC	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	56
BtgZI	GCGATG	2 cut(s)	90, 523
BtsCI	GGATG	3 cut(s)	46, 52, 66
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 247
Cac8I	GCNNGC	3 cut(s)	30, 274, 489
Cfr13I	GGNCC	2 cut(s)	274, 415
Csp6I	GTAC	2 cut(s)	291, 463
CviAII	CATG	3 cut(s)	57, 394, 595
CviJI	RGCY	8 cut(s)	11, 28, 204, 276, 286, 298, 335, 431
CviKI_1	RGCY	8 cut(s)	11, 28, 204, 276, 286, 298, 335, 431
CviQI	GTAC	2 cut(s)	291, 463
DdeI	CTNAG	2 cut(s)	303, 615
DpnI	GATC	2 cut(s)	15, 572
DpnII	GATC	2 cut(s)	13, 570
DraI	TTTAAA	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	183, 255
EarI	CTCTTC	2 cut(s)	183, 255
Eco130I	CCWWGG	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	207, 330
EcoRV	GATATC	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	3 cut(s)	60, 397, 598
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	3 cut(s)	56, 393, 594
FauI	CCCGC	2 cut(s)	265, 452
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	33, 333
FokI	GGATG	3 cut(s)	39, 53, 73
Fsp4HI	GCNGC	2 cut(s)	33, 333
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	33, 333
GsaI	CCCAGC	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	60, 397, 598
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	305
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	4 cut(s)	85, 187, 304, 310
Hpy188III	TCNNGA	4 cut(s)	95, 114, 148, 614
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	4 cut(s)	157, 202, 287, 561
HpyCH4III	ACNGT	3 cut(s)	126, 242, 321
HpyCH4V	TGCA	5 cut(s)	32, 80, 158, 173, 391
HpyF3I	CTNAG	2 cut(s)	303, 615
Hsp92II	CATG	3 cut(s)	60, 397, 598
KpnI	GGTACC	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	13, 570
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	3 cut(s)	115, 272, 627
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	3 cut(s)	51, 67, 89
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	2 cut(s)	15, 572
MbiI	CCGCTC	1 cut(s)	459
MboI	GATC	2 cut(s)	13, 570
MboII	GAAGA	5 cut(s)	80, 200, 272, 488, 645
MfeI	CAATTG	1 cut(s)	357
MluCI	AATT	4 cut(s)	168, 249, 357, 479
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	4 cut(s)	102, 184, 406, 594
Mph1103I	ATGCAT	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	5 cut(s)	48, 219, 266, 495, 528
MslI	CAYNNNNRTG	1 cut(s)	470
MspCI	CTTAAG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	56
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	2 cut(s)	13, 570
NlaIII	CATG	3 cut(s)	60, 397, 598
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	622
NsiI	ATGCAT	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	34, 334
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	274, 415
RsaI	GTAC	2 cut(s)	292, 464
RsaNI	GTAC	2 cut(s)	291, 463
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	5 cut(s)	48, 219, 266, 495, 528
SatI	GCNGC	2 cut(s)	33, 333
Sau3AI	GATC	2 cut(s)	13, 570
Sau96I	GGNCC	2 cut(s)	274, 415
SchI	GAGTC	1 cut(s)	314
SetI	ASST	6 cut(s)	13, 94, 168, 288, 300, 561
SfaNI	GCATC	3 cut(s)	51, 67, 89
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	146, 494
SmoI	CTYRAG	2 cut(s)	146, 494
Sse9I	AATT	4 cut(s)	168, 249, 357, 479
SsiI	CCGC	4 cut(s)	272, 332, 381, 459
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	3 cut(s)	126, 242, 321
TaqI	TCGA	1 cut(s)	7
TasI	AATT	4 cut(s)	168, 249, 357, 479
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	5 cut(s)	48, 219, 266, 495, 528
Tru9I	TTAA	5 cut(s)	48, 219, 266, 495, 528
TscAI	CASTG	2 cut(s)	42, 247
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	5 cut(s)	134, 152, 273, 410, 531
TspRI	CASTG	2 cut(s)	42, 247
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	415
XbaI	TCTAGA	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.