Rmu_sc0036728.1_g000001

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036728.1
OG0031017
Physical Location & Seq
Reverse (-)
2 .. 612
611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036728.1_g000001.1.cds

Sequence Viewer

Length: 611 bp
atgaattttgagcctggtttgaacccaggttttggaggaagtgcaaattataatagtaatgtcagctatgggcgtggggtgagcccttattttatgaataattcaaataggtttagcagtcccattgggtatgatggcggtaatggaggaaactcatcctttttcagctccgtgactcggagtttgtgggggaatggggggcttaatacaaattctgcaaattcgagtgcttacatgggttcaggaagtgggaccattggaggaagcacatttggcaatactggggttaactggcggtcttcggcaatttcacctcaaggtggaggaaataatgtttctaacaatagtgggaatcttggttatggagccggtgataacacttatggtttgggaacgggagggtatggaaggaacagtggtacaagtgtaggccctgcgtcttccttcaatgcgtcaaatggtggttttgatggagccttcaatgacttttacagtagtggttcagtttatggagatcccacttggcgatcatcaaattccgagcgagatgggcctggaccctttggttatggacttggcagtgcagcttctgacgtttcagctaaaagttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

204

Amino Acids

20.37

Weight (kDa)

5.08

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031017)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0036728.1_g000001 Rmu_ssc0000286.1_g000023

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 32
AciI CCGC 2 cut(s) 138, 295
AclWI GGATC 1 cut(s) 509
AcsI RAATTY 4 cut(s) 4, 211, 220, 535
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 3 cut(s) 32, 177, 320
AgsI TTSAA 4 cut(s) 22, 105, 448, 481
AjnI CCWGG 3 cut(s) 13, 25, 553
AluBI AGCT 4 cut(s) 66, 168, 587, 602
AluI AGCT 4 cut(s) 66, 168, 587, 602
AlwI GGATC 1 cut(s) 509
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 2 cut(s) 430, 551
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 4 cut(s) 4, 211, 220, 535
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspS9I GGNCC 4 cut(s) 252, 431, 551, 557
AsuHPI GGTGA 3 cut(s) 91, 303, 383
AvaII GGWCC 2 cut(s) 252, 557
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 291, 432
BbvI GCAGC 1 cut(s) 596
BccI CCATC 3 cut(s) 128, 464, 542
BciT130I CCWGG 3 cut(s) 15, 27, 555
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
Bme1390I CCNGG 3 cut(s) 15, 27, 555
Bme18I GGWCC 2 cut(s) 252, 557
BmgT120I GGNCC 4 cut(s) 252, 431, 551, 557
BmiI GGNNCC 4 cut(s) 253, 367, 475, 559
BmrFI CCNGG 3 cut(s) 15, 27, 555
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 291, 432
BpuEI CTTGAG 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 177, 320
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 2 cut(s) 286, 296
BseBI CCWGG 3 cut(s) 15, 27, 555
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 3 cut(s) 32, 177, 320
BseNI ACTGG 2 cut(s) 286, 296
BseXI GCAGC 1 cut(s) 596
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 2 cut(s) 432, 553
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 2 cut(s) 105, 265
BslI CCNNNNNNNGG 3 cut(s) 32, 177, 320
BsmFI GGGAC 2 cut(s) 105, 265
BsnI GGCC 2 cut(s) 432, 553
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 514, 527
BspACI CCGC 2 cut(s) 138, 295
BspANI GGCC 2 cut(s) 432, 553
BspLI GGNNCC 4 cut(s) 253, 367, 475, 559
BspPI GGATC 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 368
BsrI ACTGG 2 cut(s) 286, 296
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 2 cut(s) 514, 527
Bst2UI CCWGG 3 cut(s) 15, 27, 555
Bst4CI ACNGT 2 cut(s) 416, 494
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 2 cut(s) 517, 530
BstMBI GATC 2 cut(s) 514, 527
BstMWI GCNNNNNNNGC 2 cut(s) 273, 550
BstNI CCWGG 3 cut(s) 15, 27, 555
BstSCI CCNGG 3 cut(s) 13, 25, 553
BstV1I GCAGC 1 cut(s) 596
BstV2I GAAGAC 2 cut(s) 291, 432
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BsuRI GGCC 2 cut(s) 432, 553
BtsCI GGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 421, 586
CaiI CAGNNNCTG 1 cut(s) 590
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 4 cut(s) 252, 431, 551, 557
CseI GACGC 2 cut(s) 426, 441
Csp6I GTAC 1 cut(s) 420
CviAII CATG 1 cut(s) 235
CviQI GTAC 1 cut(s) 420
DpnI GATC 2 cut(s) 516, 529
DpnII GATC 2 cut(s) 514, 527
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 252, 557
EcoO109I RGGNCCY 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 13, 25, 553
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 1 cut(s) 238
FaqI GGGAC 2 cut(s) 105, 265
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 585
GluI GCNGC 1 cut(s) 585
HaeIII GGCC 2 cut(s) 432, 553
HapII CCGG 1 cut(s) 369
HgaI GACGC 2 cut(s) 426, 441
Hin1II CATG 1 cut(s) 238
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 2 cut(s) 175, 352
HpaI GTTAAC 1 cut(s) 289
HpaII CCGG 1 cut(s) 369
HphI GGTGA 3 cut(s) 91, 303, 383
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 180, 541, 592
Hpy188III TCNNGA 1 cut(s) 243
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 402, 454, 487
HpyCH4III ACNGT 2 cut(s) 416, 494
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 3 cut(s) 44, 218, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 550
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 1 cut(s) 238
KspAI GTTAAC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 514, 527
LmnI GCTCC 3 cut(s) 173, 365, 473
Lsp1109I GCAGC 1 cut(s) 596
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 516, 529
MboI GATC 2 cut(s) 514, 527
MboII GAAGA 2 cut(s) 291, 432
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 7 cut(s) 4, 46, 100, 211, 220, 306, 535
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 6 cut(s) 29, 140, 254, 317, 324, 392
MseI TTAA 2 cut(s) 204, 288
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 3 cut(s) 15, 27, 555
MvaI CCWGG 3 cut(s) 15, 27, 555
MwoI GCNNNNNNNGC 2 cut(s) 273, 550
NdeII GATC 2 cut(s) 514, 527
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 4 cut(s) 253, 367, 475, 559
NmuCI GTSAC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 352
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PsiI TTATAA 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 13, 25, 553
PspGI CCWGG 3 cut(s) 13, 25, 553
PspN4I GGNNCC 4 cut(s) 253, 367, 475, 559
PspPI GGNCC 4 cut(s) 252, 431, 551, 557
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
SaqAI TTAA 2 cut(s) 204, 288
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 2 cut(s) 514, 527
Sau96I GGNCC 4 cut(s) 252, 431, 551, 557
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 3 cut(s) 15, 27, 555
SduI GDGCHC 1 cut(s) 86
SetI ASST 9 cut(s) 31, 68, 113, 170, 316, 322, 589, 597, 604
SinI GGWCC 2 cut(s) 252, 557
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 7 cut(s) 4, 46, 100, 211, 220, 306, 535
SsiI CCGC 2 cut(s) 138, 295
StyD4I CCNGG 3 cut(s) 13, 25, 553
TaaI ACNGT 2 cut(s) 416, 494
TaiI ACGT 1 cut(s) 597
TaqI TCGA 1 cut(s) 224
TasI AATT 7 cut(s) 4, 46, 100, 211, 220, 306, 535
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 2 cut(s) 204, 288
Tru9I TTAA 2 cut(s) 204, 288
TscAI CASTG 2 cut(s) 421, 586
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 17, 110
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 2 cut(s) 421, 586
Van91I CCANNNNNTGG 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 252, 557
XapI RAATTY 4 cut(s) 4, 211, 220, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.