Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036924.1

Orthogroup ID

OG0024696

Physical Location & Seq

Genomic Coordinates Reverse (-)

18882 .. 20962

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036924.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgaatgtgtttggtactgaaaatagggatactttaacacacaaggccacagggtattctgcaaagcttttgaagaaacctgaccagtgcagagcagtgtatgcatgttcacacctgttttgggttgatgatcaggatggtgttaaagatggagaaagggtcttgctttgtttaaagcgtgccttgagaattgcaaatgctgctcaacaaatggccagtgtaactcggggtagcagtggaccagtgacactctttgttgaaatactaaacaagtacctctacttttttgagaaaggaaacccccagattaccagtgctgcaattcagggattggtggagttaattacaaccgagttgcaaagtgactctagtaatgtgaaaccagcctctgatgcattttttgccagcacactgcgaagctattggactagagtagaaccacagcccagaaactcaaagcccaccaaagcgaaggtcaacccaaggcccatcagcctggtcccgtctagtcctcctacacccacgtccccgttgtatgtaacagccaagttgctccttccaccacgcgccgccactagcactcacctcctacgacccaaacagcatgggccacactgcccttacccacaccctctcacctcacatcaccatcgagtcagactggtggcgccttcatcagggtttttaccgccggacctgttagcacgaccaccgcctctcaccatctcagccaaaaccaccgacaagccccgagcaaaccccattcgatggaacaaaagcaatagccattcaataccggtccggcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps35

Protein Analysis

269

Amino Acids

29.74

Weight (kDa)

10.08

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024696)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g00850
rosa_multiflora	Rmu_co8234477.1_g000001 Rmu_sc0036924.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	667
AccB7I	CCANNNNNTGG	1 cut(s)	768
AccII	CGCG	1 cut(s)	567
AciI	CCGC	3 cut(s)	570, 689, 713
AcoI	YGGCCR	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	2 cut(s)	16, 275
AfiI	CCNNNNNNNGG	3 cut(s)	121, 677, 768
AgeI	ACCGGT	1 cut(s)	796
AgsI	TTSAA	3 cut(s)	73, 260, 792
AjiI	CACGTC	1 cut(s)	525
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	2 cut(s)	67, 420
AluI	AGCT	2 cut(s)	67, 420
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	2 cut(s)	225, 750
AoxI	GGCC	4 cut(s)	45, 213, 485, 608
ApeKI	GCWGC	2 cut(s)	200, 317
ArsI	GACNNNNNNTTYG	2 cut(s)	459, 491
AsiGI	ACCGGT	1 cut(s)	796
AspLEI	GCGC	2 cut(s)	569, 670
AspS9I	GGNCC	6 cut(s)	239, 486, 499, 608, 694, 799
AsuHPI	GGTGA	4 cut(s)	575, 628, 638, 712
AvaI	CYCGRG	2 cut(s)	225, 750
AvaII	GGWCC	4 cut(s)	239, 499, 694, 799
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	187, 304
BccI	CCATC	6 cut(s)	131, 143, 497, 657, 731, 762
BciT130I	CCWGG	1 cut(s)	497
BciVI	GTATCC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	130
BfaI	CTAG	4 cut(s)	369, 429, 507, 576
BfoI	RGCGCY	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	3 cut(s)	201, 318, 570
BlsI	GCNGC	3 cut(s)	202, 319, 571
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	4 cut(s)	239, 499, 694, 799
BmeT110I	CYCGRG	2 cut(s)	225, 750
BmgBI	CACGTC	1 cut(s)	525
BmgT120I	GGNCC	6 cut(s)	239, 486, 499, 608, 694, 799
BmiI	GGNNCC	2 cut(s)	501, 669
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	796
BsaXI	ACNNNNNCTCC	2 cut(s)	144, 174
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 677, 768
Bse118I	RCCGGY	1 cut(s)	796
Bse1I	ACTGG	5 cut(s)	85, 216, 242, 312, 666
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	3 cut(s)	121, 677, 768
BseMII	CTCAG	1 cut(s)	741
BseNI	ACTGG	5 cut(s)	85, 216, 242, 312, 666
BseXI	GCAGC	2 cut(s)	187, 304
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	4 cut(s)	47, 215, 487, 610
BshNI	GGYRCC	1 cut(s)	667
BshTI	ACCGGT	1 cut(s)	796
BsiHKCI	CYCGRG	2 cut(s)	225, 750
BsiSI	CCGG	3 cut(s)	692, 797, 802
BslFI	GGGAC	2 cut(s)	485, 511
BslI	CCNNNNNNNGG	3 cut(s)	121, 677, 768
BsmFI	GGGAC	2 cut(s)	485, 511
BsnI	GGCC	4 cut(s)	47, 215, 487, 610
BsoBI	CYCGRG	2 cut(s)	225, 750
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	3 cut(s)	570, 689, 713
BspANI	GGCC	4 cut(s)	47, 215, 487, 610
BspCNI	CTCAG	1 cut(s)	740
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	501, 669
BspT107I	GGYRCC	1 cut(s)	667
BsrFI	RCCGGY	1 cut(s)	796
BsrI	ACTGG	5 cut(s)	85, 216, 242, 312, 666
BssAI	RCCGGY	1 cut(s)	796
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	668
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	668
BstAPI	GCANNNNNTGC	3 cut(s)	101, 200, 401
BstC8I	GCNNGC	2 cut(s)	180, 406
BstDEI	CTNAG	1 cut(s)	727
BstENI	CCTNNNNNAGG	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	567
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	2 cut(s)	569, 670
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 200, 392, 401
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	187, 304
BstXI	CCANNNNNNTGG	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	47, 215, 487, 610
BtrI	CACGTC	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	4 cut(s)	102, 241, 410, 613
BtsIMutI	CAGTG	8 cut(s)	92, 102, 223, 241, 249, 319, 410, 613
Cac8I	GCNNGC	2 cut(s)	180, 406
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	2 cut(s)	569, 670
Cfr10I	RCCGGY	1 cut(s)	796
Cfr13I	GGNCC	6 cut(s)	239, 486, 499, 608, 694, 799
CpoI	CGGWCCG	1 cut(s)	799
Csp6I	GTAC	2 cut(s)	15, 274
CspAI	ACCGGT	1 cut(s)	796
CspI	CGGWCCG	1 cut(s)	799
CviAII	CATG	2 cut(s)	105, 605
CviQI	GTAC	2 cut(s)	15, 274
DdeI	CTNAG	1 cut(s)	727
DinI	GGCGCC	1 cut(s)	669
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
DraI	TTTAAA	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	482
Eco47I	GGWCC	4 cut(s)	239, 499, 694, 799
Eco88I	CYCGRG	2 cut(s)	225, 750
EcoNI	CCTNNNNNAGG	1 cut(s)	675
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	482
EcoT22I	ATGCAT	2 cut(s)	106, 397
EgeI	GGCGCC	1 cut(s)	669
EheI	GGCGCC	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	2 cut(s)	108, 608
FaiI	YATR	4 cut(s)	102, 106, 537, 606
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	485, 511
FatI	CATG	2 cut(s)	104, 604
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	201, 318, 570
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	201, 318, 570
FspBI	CTAG	4 cut(s)	369, 429, 507, 576
GlaI	GCGC	2 cut(s)	568, 669
GluI	GCNGC	3 cut(s)	201, 318, 570
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	4 cut(s)	47, 215, 487, 610
HapII	CCGG	3 cut(s)	692, 797, 802
HhaI	GCGC	2 cut(s)	569, 670
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	2 cut(s)	108, 608
Hin6I	GCGC	2 cut(s)	567, 668
HinP1I	GCGC	2 cut(s)	567, 668
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	2 cut(s)	365, 654
HpaII	CCGG	3 cut(s)	692, 797, 802
HphI	GGTGA	4 cut(s)	575, 628, 638, 712
Hpy166II	GTNNAC	3 cut(s)	110, 239, 478
Hpy188I	TCNGA	2 cut(s)	391, 659
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	3 cut(s)	110, 239, 478
HpyAV	CCTTC	3 cut(s)	466, 566, 681
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	7 cut(s)	62, 90, 104, 194, 320, 358, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 200, 392, 401
HpyF3I	CTNAG	1 cut(s)	727
HpySE526I	ACGT	1 cut(s)	524
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	2 cut(s)	108, 608
HspAI	GCGC	2 cut(s)	567, 668
KasI	GGCGCC	1 cut(s)	667
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	558
Lsp1109I	GCAGC	2 cut(s)	187, 304
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	4 cut(s)	369, 429, 507, 576
MaeII	ACGT	1 cut(s)	524
MaeIII	GTNAC	4 cut(s)	220, 244, 362, 538
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	3 cut(s)	189, 321, 342
MluNI	TGGCCA	1 cut(s)	215
Mly113I	GGCGCC	1 cut(s)	668
MlyI	GAGTC	2 cut(s)	359, 663
MnlI	CCTC	7 cut(s)	287, 397, 522, 596, 642, 649, 726
Mox20I	TGGCCA	1 cut(s)	215
Mph1103I	ATGCAT	2 cut(s)	106, 397
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	4 cut(s)	35, 144, 173, 341
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	3 cut(s)	692, 797, 802
MspR9I	CCNGG	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	497
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	4 cut(s)	101, 200, 392, 401
NarI	GGCGCC	1 cut(s)	668
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	108, 608
NlaIV	GGNNCC	2 cut(s)	501, 669
NmuCI	GTSAC	2 cut(s)	244, 362
NsiI	ATGCAT	2 cut(s)	106, 397
NspI	RCATGY	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	768
PinAI	ACCGGT	1 cut(s)	796
PkrI	GCNGC	3 cut(s)	202, 319, 571
PleI	GAGTC	2 cut(s)	359, 662
PluTI	GGCGCC	1 cut(s)	671
PpsI	GAGTC	2 cut(s)	359, 662
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	501, 669
PspPI	GGNCC	6 cut(s)	239, 486, 499, 608, 694, 799
PstNI	CAGNNNCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	16, 275
RsaNI	GTAC	2 cut(s)	15, 274
Rsr2I	CGGWCCG	1 cut(s)	799
RsrII	CGGWCCG	1 cut(s)	799
SaqAI	TTAA	4 cut(s)	35, 144, 173, 341
SatI	GCNGC	3 cut(s)	201, 318, 570
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	6 cut(s)	239, 486, 499, 608, 694, 799
SchI	GAGTC	2 cut(s)	359, 663
ScrFI	CCNGG	1 cut(s)	497
SfaNI	GCATC	1 cut(s)	382
SfoI	GGCGCC	1 cut(s)	669
SinI	GGWCC	4 cut(s)	239, 499, 694, 799
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	3 cut(s)	189, 321, 342
SsiI	CCGC	3 cut(s)	570, 689, 713
SspDI	GGCGCC	1 cut(s)	667
SspMI	CTAG	4 cut(s)	369, 429, 507, 576
StyD4I	CCNGG	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	482
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	2 cut(s)	652, 766
TasI	AATT	3 cut(s)	189, 321, 342
TauI	GCSGC	1 cut(s)	572
Tru1I	TTAA	4 cut(s)	35, 144, 173, 341
Tru9I	TTAA	4 cut(s)	35, 144, 173, 341
TscAI	CASTG	8 cut(s)	92, 102, 223, 241, 249, 319, 417, 620
TseFI	GTSAC	2 cut(s)	244, 362
TseI	GCWGC	2 cut(s)	200, 317
Tsp45I	GTSAC	2 cut(s)	244, 362
TspDTI	ATGAA	2 cut(s)	17, 663
TspRI	CASTG	8 cut(s)	92, 102, 223, 241, 249, 319, 417, 620
Van91I	CCANNNNNTGG	1 cut(s)	768
VpaK11BI	GGWCC	4 cut(s)	239, 499, 694, 799
XagI	CCTNNNNNAGG	1 cut(s)	675
XceI	RCATGY	1 cut(s)	108
XspI	CTAG	4 cut(s)	369, 429, 507, 576
Zsp2I	ATGCAT	2 cut(s)	106, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.