Rmu_sc0036967.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036967.1
OG0029408
Physical Location & Seq
Reverse (-)
2 .. 288
287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036967.1_g000001.1.cds

Sequence Viewer

Length: 287 bp
atgctgagtcaagacccttcgctctgtaaaaccctaaacccttccctctttcttctcactccatttccgaaccctctccgccaaaccctaaccctcaagccctccagcgctccaaaacgcttcggcatcagagctttgtccgaaattccccaaattgccgtccccaatttcacattatcccgccaacctccgcgggacctgcgcgccttcgccggccggagcaagaagaaggccggaggaggtccgggaggctccggcggagacggccgaatcgatgcaaactccga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.08

Weight (kDa)

11.29

Isoelectric Point (pI)

57.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029408)

Species Orthologous Gene IDs
pyrus_communis pycom11g23230
rosa_multiflora Rmu_sc0036967.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AccII CGCG 2 cut(s) 193, 204
AciI CCGC 5 cut(s) 79, 181, 191, 193, 258
AcoI YGGCCR 2 cut(s) 214, 265
AcsI RAATTY 1 cut(s) 144
AfeI AGCGCT 1 cut(s) 109
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 255
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 3 cut(s) 214, 231, 265
ApoI RAATTY 1 cut(s) 144
AspLEI GCGC 3 cut(s) 110, 204, 206
AspS9I GGNCC 2 cut(s) 196, 242
AsuC2I CCSGG 1 cut(s) 246
AvaII GGWCC 2 cut(s) 196, 242
BceAI ACGGC 2 cut(s) 143, 280
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 196, 242
BmgT120I GGNCC 2 cut(s) 196, 242
BmiI GGNNCC 2 cut(s) 197, 253
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 135, 265
BpmI CTGGAG 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 191
BsePI GCGCGC 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 252
BseX3I CGGCCG 2 cut(s) 214, 265
Bsh1236I CGCG 2 cut(s) 193, 204
Bsh1285I CGRYCG 2 cut(s) 217, 268
BshFI GGCC 3 cut(s) 216, 233, 267
BshVI ATCGAT 1 cut(s) 273
BsiEI CGRYCG 2 cut(s) 217, 268
BsiSI CCGG 5 cut(s) 213, 217, 234, 245, 255
BslFI GGGAC 2 cut(s) 146, 209
BsmAI GTCTC 1 cut(s) 255
BsmBI CGTCTC 1 cut(s) 255
BsmFI GGGAC 2 cut(s) 146, 209
BsnI GGCC 3 cut(s) 216, 233, 267
BspACI CCGC 5 cut(s) 79, 181, 191, 193, 258
BspANI GGCC 3 cut(s) 216, 233, 267
BspDI ATCGAT 1 cut(s) 273
BspFNI CGCG 2 cut(s) 193, 204
BspLI GGNNCC 2 cut(s) 197, 253
BspMI ACCTGC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 191
BssHII GCGCGC 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 204, 214
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 191
BstFNI CGCG 2 cut(s) 193, 204
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 3 cut(s) 110, 204, 206
BstMAI GTCTC 1 cut(s) 255
BstMCI CGRYCG 2 cut(s) 217, 268
BstMWI GCNNNNNNNGC 2 cut(s) 199, 264
BstSCI CCNGG 1 cut(s) 244
BstUI CGCG 2 cut(s) 193, 204
BstZI CGGCCG 2 cut(s) 214, 265
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 3 cut(s) 216, 233, 267
BsuTUI ATCGAT 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 191
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 204, 214
CfoI GCGC 3 cut(s) 110, 204, 206
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 196, 242
Cfr42I CCGCGG 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 273
CviJI RGCY 6 cut(s) 100, 134, 216, 233, 252, 267
CviKI_1 RGCY 6 cut(s) 100, 134, 216, 233, 252, 267
DdeI CTNAG 1 cut(s) 5
EaeI YGGCCR 2 cut(s) 214, 265
EagI CGGCCG 2 cut(s) 214, 265
EciI GGCGGA 2 cut(s) 68, 273
EclXI CGGCCG 2 cut(s) 214, 265
Eco47I GGWCC 2 cut(s) 196, 242
Eco47III AGCGCT 1 cut(s) 109
Eco52I CGGCCG 2 cut(s) 214, 265
EcoO109I RGGNCCY 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 255
FaqI GGGAC 2 cut(s) 146, 209
FauI CCCGC 2 cut(s) 186, 188
GlaI GCGC 3 cut(s) 109, 203, 205
GsuI CTGGAG 1 cut(s) 88
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 216, 233, 267
HapII CCGG 5 cut(s) 213, 217, 234, 245, 255
HhaI GCGC 3 cut(s) 110, 204, 206
Hin6I GCGC 3 cut(s) 108, 202, 204
HinP1I GCGC 3 cut(s) 108, 202, 204
HinfI GANTC 2 cut(s) 7, 270
HpaII CCGG 5 cut(s) 213, 217, 234, 245, 255
Hpy188I TCNGA 4 cut(s) 69, 131, 142, 286
Hpy188III TCNNGA 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 27, 51, 217, 223
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 264
HpyF3I CTNAG 1 cut(s) 5
HspAI GCGC 3 cut(s) 108, 202, 204
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
KspI CCGCGG 1 cut(s) 194
LmnI GCTCC 3 cut(s) 115, 219, 257
LpnPI CCDG 7 cut(s) 118, 212, 226, 230, 247, 258, 268
LweI GCATC 2 cut(s) 135, 265
MboII GAAGA 2 cut(s) 44, 238
MluCI AATT 3 cut(s) 144, 153, 166
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 8 cut(s) 56, 84, 104, 112, 198, 230, 233, 242
MroNI GCCGGC 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 5 cut(s) 213, 217, 234, 245, 255
MspR9I CCNGG 1 cut(s) 246
MvnI CGCG 2 cut(s) 193, 204
MwoI GCNNNNNNNGC 2 cut(s) 199, 264
NaeI GCCGGC 1 cut(s) 214
NciI CCSGG 1 cut(s) 246
NgoMIV GCCGGC 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 197, 253
PauI GCGCGC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PdiI GCCGGC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 244
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 196
Psp5II RGGWCCY 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 197, 253
PspPI GGNCC 2 cut(s) 196, 242
PspPPI RGGWCCY 1 cut(s) 196
PteI GCGCGC 1 cut(s) 202
SacII CCGCGG 1 cut(s) 194
Sau96I GGNCC 2 cut(s) 196, 242
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 246
SetI ASST 4 cut(s) 136, 190, 201, 244
SfaNI GCATC 2 cut(s) 135, 265
Sfr303I CCGCGG 1 cut(s) 194
SgrBI CCGCGG 1 cut(s) 194
SinI GGWCC 2 cut(s) 196, 242
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 3 cut(s) 144, 153, 166
SsiI CCGC 5 cut(s) 79, 181, 191, 193, 258
StyD4I CCNGG 1 cut(s) 244
TaqI TCGA 1 cut(s) 273
TasI AATT 3 cut(s) 144, 153, 166
TfiI GAWTC 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 196, 242
XapI RAATTY 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.