Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037966.1

Orthogroup ID

OG0029831

Physical Location & Seq

Genomic Coordinates Forward (+)

10589 .. 11093

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037966.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggctgttgcattctttttcctcactttctttttcatgatccccattgcatttgtacaatctcttgcaagcctggagggacttgagaaagtagctccattcctaaagcccattgttgaaatgaagttcattaattcagtcattacaggctttctacctgggatcgcactgaagttgtttctgatatttttgccaaccatattgatgatcatggctaaatttgaggggtatacatctctgtcttctcttgagaggagagcagcatctagatactatctcttcactttggtgaatgtattccttggtagcattataactggatcggcacttgaacagctaaagtctttcatacaccaatcaccatctgagtacgtattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005227 GO:0005261 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008324 GO:0009628 GO:0009987 GO:0010959 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016043 GO:0022607 GO:0022803 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0032879 GO:0033554 GO:0034220 GO:0043269 GO:0043933 GO:0044085 GO:0044464 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051259 GO:0051262 GO:0051716 GO:0051924 GO:0055085 GO:0065003 GO:0065007 GO:0071214 GO:0071470 GO:0071474 GO:0071840 GO:0071944 GO:0090279 GO:0098655 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

126

Amino Acids

14.19

Weight (kDa)

9.05

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029831)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130371
rosa_multiflora	Rmu_sc0037966.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	230
AclWI	GGATC	3 cut(s)	34, 170, 328
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	2 cut(s)	57, 371
AgsI	TTSAA	2 cut(s)	119, 332
AjnI	CCWGG	2 cut(s)	72, 157
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	95, 337
AluI	AGCT	2 cut(s)	95, 337
AlwI	GGATC	3 cut(s)	34, 170, 328
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	218
AseI	ATTAAT	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	301, 351
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	1 cut(s)	370
BciT130I	CCWGG	2 cut(s)	74, 159
BclI	TGATCA	1 cut(s)	207
BfaI	CTAG	1 cut(s)	267
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	74, 159
BmrFI	CCNGG	2 cut(s)	74, 159
BmsI	GCATC	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	95
BpuEI	CTTGAG	2 cut(s)	104, 269
BsaAI	YACGTR	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	158, 301
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	74, 159
BseDI	CCNNGG	2 cut(s)	158, 301
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	39, 162, 207, 320
BspCNI	CTCAG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	36
BspPI	GGATC	3 cut(s)	34, 170, 328
BsrDI	GCAATG	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	158, 301
BssMI	GATC	4 cut(s)	39, 162, 207, 320
BssNAI	GTATAC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	301
Bst1107I	GTATAC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	74, 159
Bst6I	CTCTTC	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	366
BstKTI	GATC	4 cut(s)	42, 165, 210, 323
BstMBI	GATC	4 cut(s)	39, 162, 207, 320
BstNI	CCWGG	2 cut(s)	74, 159
BstSCI	CCNGG	2 cut(s)	72, 157
BstSNI	TACGTA	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	234
BstZ17I	GTATAC	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	70
CciI	TCATGA	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	56, 370
CviAII	CATG	2 cut(s)	37, 211
CviJI	RGCY	7 cut(s)	5, 72, 95, 109, 150, 215, 337
CviKI_1	RGCY	7 cut(s)	5, 72, 95, 109, 150, 215, 337
CviQI	GTAC	2 cut(s)	56, 370
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	4 cut(s)	41, 164, 209, 322
DpnII	GATC	4 cut(s)	39, 162, 207, 320
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco105I	TACGTA	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	72, 157
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	2 cut(s)	40, 214
FaiI	YATR	6 cut(s)	38, 200, 212, 231, 314, 350
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	2 cut(s)	36, 210
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	95
Hin1II	CATG	2 cut(s)	40, 214
HphI	GGTGA	2 cut(s)	301, 351
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	183, 367
Hpy188III	TCNNGA	3 cut(s)	37, 248, 267
Hpy8I	GTNNAC	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	3 cut(s)	11, 50, 68
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	40, 214
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	39, 162, 207, 320
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	6 cut(s)	59, 86, 132, 144, 171, 303
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	372
MalI	GATC	4 cut(s)	41, 164, 209, 322
MboI	GATC	4 cut(s)	39, 162, 207, 320
MboII	GAAGA	2 cut(s)	234, 271
MluCI	AATT	2 cut(s)	133, 218
MnlI	CCTC	4 cut(s)	32, 70, 217, 246
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	203, 287
MspR9I	CCNGG	2 cut(s)	74, 159
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	2 cut(s)	74, 159
NdeII	GATC	4 cut(s)	39, 162, 207, 320
NlaIII	CATG	2 cut(s)	40, 214
OliI	CACNNNNGTG	1 cut(s)	287
PagI	TCATGA	1 cut(s)	36
PctI	GAATGC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	262
Ppu21I	YACGTR	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	72, 157
PspGI	CCWGG	2 cut(s)	72, 157
RsaI	GTAC	2 cut(s)	57, 371
RsaNI	GTAC	2 cut(s)	56, 370
RseI	CAYNNNNRTG	2 cut(s)	203, 287
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	4 cut(s)	39, 162, 207, 320
ScrFI	CCNGG	2 cut(s)	74, 159
SetI	ASST	4 cut(s)	97, 160, 339, 375
SfaNI	GCATC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	203, 287
SmlI	CTYRAG	2 cut(s)	83, 248
SmoI	CTYRAG	2 cut(s)	83, 248
SnaBI	TACGTA	1 cut(s)	373
Sse9I	AATT	2 cut(s)	133, 218
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	72, 157
StyI	CCWWGG	1 cut(s)	301
TaiI	ACGT	1 cut(s)	375
TasI	AATT	2 cut(s)	133, 218
TatI	WGTACW	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	4 cut(s)	25, 118, 137, 337
TspRI	CASTG	1 cut(s)	174
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	1 cut(s)	218
XbaI	TCTAGA	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.