Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038022.1

Orthogroup ID

OG0031257

Physical Location & Seq

Genomic Coordinates Forward (+)

17 .. 2231

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038022.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atggtggagctacccaaagagttgcagcaagcagcacaacaggctgaccaggctaaggtactagccaaaatggctgctgaagatctgcgtaaggcaaaagaagaagcagatcaagcaaaggctggagcaagtactatggagagtagattattagcagcacaaaaggaaatagaggctgcaagggcttctgaaaggttagcgttagcagcaatcaaagcattgcaggagagtgagcaagcccgatccacccccgctgatgctgattcaccgcctggagtaacactctctataggggagtattatgagctcagcaaacgtgcccatgaggcagaggagcaggcaaacacgagagttgccgctgcaagttccaaaattgaggcagccaaggagtctgagctgagaagcttggagaagttggaagaagtgagtagggaaatggcttcgagaaaagaagcactcaggatggcaatggagaaggctgagaaggccaaggaagggaaattgggtgttgaacaggagctgagaaagtggagagccgaacacgagcaacgacgaaagcttggtgaacctggtcaggcagccgtaaaccccactagaagcccaaggggtagttttgagggagtgaaagattctaaaggctttgaccaggcacctgtctctgcagtacgtgacccttatggttcaatccccaaccatgcatcaggaaatgtcactggaagtgagccatccccccaagaagtaaagggtggaaagaagaagaagaaagtgactgtaaatgcgggatttgatctgacagattattacttcactgtacatgtcgacattgtttccacctccatgcaagttgaggctaatgttggacgtgttaagttgagagttgcaagcgaggccaacgacggtggggttggcatagaagcaacactggcagtaccgcgcgtctcggtgacgctgtcgtcggacgggcttgttttcagaggcctattttggctgcttggcttcgggttaaggtttcaaatcctggctgttttcaagatggtggcaaggagggaggcaatggagggtgagatattattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016020 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

358

Amino Acids

38.87

Weight (kDa)

6.97

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031257)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003252.1_g000016 Rmu_sc0038022.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	952
AccB1I	GGYRCC	1 cut(s)	649
AccI	GTMKAC	1 cut(s)	819
AccII	CGCG	2 cut(s)	934, 936
AciI	CCGC	5 cut(s)	252, 269, 357, 779, 932
AclWI	GGATC	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	5 cut(s)	60, 133, 666, 813, 930
AfiI	CCNNNNNNNGG	2 cut(s)	55, 495
AflIII	ACRYGT	2 cut(s)	814, 862
AgsI	TTSAA	4 cut(s)	512, 684, 1013, 1030
AjiI	CACGTC	1 cut(s)	863
AjnI	CCWGG	5 cut(s)	48, 271, 568, 645, 1017
AluBI	AGCT	6 cut(s)	10, 307, 397, 405, 520, 559
AluI	AGCT	6 cut(s)	10, 307, 397, 405, 520, 559
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	2 cut(s)	661, 943
AlwI	GGATC	1 cut(s)	237
AlwNI	CAGNNNCTG	1 cut(s)	520
AoxI	GGCC	3 cut(s)	486, 888, 976
AspLEI	GCGC	1 cut(s)	936
AsuHPI	GGTGA	4 cut(s)	258, 575, 955, 1073
BaeGI	GKGCMC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	309
BauI	CACGAG	2 cut(s)	346, 542
Bbv12I	GWGCWC	1 cut(s)	309
BccI	CCATC	3 cut(s)	457, 733, 1027
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	5 cut(s)	50, 273, 570, 647, 1019
BcoDI	GTCTC	2 cut(s)	661, 943
BfaI	CTAG	2 cut(s)	62, 594
BfmI	CTRYAG	2 cut(s)	288, 660
BglI	GCCNNNNNGGC	2 cut(s)	71, 326
BglII	AGATCT	1 cut(s)	82
BlpI	GCTNAGC	1 cut(s)	308
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	5 cut(s)	50, 273, 570, 647, 1019
BmgBI	CACGTC	1 cut(s)	863
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	5 cut(s)	50, 273, 570, 647, 1019
BmsI	GCATC	2 cut(s)	247, 707
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BpmI	CTGGAG	2 cut(s)	144, 294
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	384, 489, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 495
Bse1I	ACTGG	2 cut(s)	718, 927
Bse3DI	GCAATG	3 cut(s)	218, 474, 1059
BseBI	CCWGG	5 cut(s)	50, 273, 570, 647, 1019
BseDI	CCNNGG	3 cut(s)	384, 489, 602
BseGI	GGATG	2 cut(s)	468, 725
BseLI	CCNNNNNNNGG	2 cut(s)	55, 495
BseMI	GCAATG	3 cut(s)	218, 474, 1059
BseMII	CTCAG	6 cut(s)	322, 384, 389, 471, 472, 512
BseNI	ACTGG	2 cut(s)	718, 927
BseRI	GAGGAG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	322
Bsh1236I	CGCG	2 cut(s)	934, 936
BshFI	GGCC	3 cut(s)	488, 890, 978
BshNI	GGYRCC	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	55, 495
BsmAI	GTCTC	2 cut(s)	661, 943
BsmBI	CGTCTC	1 cut(s)	943
BsnI	GGCC	3 cut(s)	488, 890, 978
Bsp1286I	GDGCHC	2 cut(s)	309, 322
Bsp1407I	TGTACA	1 cut(s)	811
Bsp143I	GATC	4 cut(s)	82, 109, 242, 787
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	5 cut(s)	252, 269, 357, 779, 932
BspANI	GGCC	3 cut(s)	488, 890, 978
BspCNI	CTCAG	6 cut(s)	321, 385, 390, 471, 472, 513
BspFNI	CGCG	2 cut(s)	934, 936
BspLI	GGNNCC	1 cut(s)	651
BspMAI	CTGCAG	1 cut(s)	664
BspPI	GGATC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	3 cut(s)	218, 474, 1059
BsrGI	TGTACA	1 cut(s)	811
BsrI	ACTGG	2 cut(s)	718, 927
BssECI	CCNNGG	3 cut(s)	384, 489, 602
BssMI	GATC	4 cut(s)	82, 109, 242, 787
BssSI	CACGAG	2 cut(s)	346, 542
BssT1I	CCWWGG	3 cut(s)	384, 489, 602
Bst2BI	CACGAG	2 cut(s)	346, 542
Bst2UI	CCWGG	5 cut(s)	50, 273, 570, 647, 1019
Bst4CI	ACNGT	3 cut(s)	772, 811, 899
BstAUI	TGTACA	1 cut(s)	811
BstBAI	YACGTR	1 cut(s)	668
BstC8I	GCNNGC	4 cut(s)	30, 237, 339, 883
BstDEI	CTNAG	7 cut(s)	54, 308, 393, 398, 458, 480, 521
BstF5I	GGATG	2 cut(s)	468, 725
BstFNI	CGCG	2 cut(s)	934, 936
BstHHI	GCGC	1 cut(s)	936
BstKTI	GATC	4 cut(s)	85, 112, 245, 790
BstMAI	GTCTC	2 cut(s)	661, 943
BstMBI	GATC	4 cut(s)	82, 109, 242, 787
BstNI	CCWGG	5 cut(s)	50, 273, 570, 647, 1019
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	5 cut(s)	48, 271, 568, 645, 1017
BstSFI	CTRYAG	2 cut(s)	288, 660
BstSLI	GKGCMC	1 cut(s)	322
BstUI	CGCG	2 cut(s)	934, 936
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	488, 890, 978
BtrI	CACGTC	1 cut(s)	863
BtsCI	GGATG	2 cut(s)	468, 725
BtsIMutI	CAGTG	3 cut(s)	711, 807, 920
Cac8I	GCNNGC	4 cut(s)	30, 237, 339, 883
CaiI	CAGNNNCTG	1 cut(s)	520
CfoI	GCGC	1 cut(s)	936
CseI	GACGC	2 cut(s)	925, 955
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	5 cut(s)	59, 132, 665, 812, 929
CspCI	CAANNNNNGTGG	2 cut(s)	880, 915
CviAII	CATG	4 cut(s)	323, 695, 815, 838
CviQI	GTAC	5 cut(s)	59, 132, 665, 812, 929
DdeI	CTNAG	7 cut(s)	54, 308, 393, 398, 458, 480, 521
DpnI	GATC	4 cut(s)	84, 111, 244, 789
DpnII	GATC	4 cut(s)	82, 109, 242, 787
DrdI	GACNNNNNNGTC	1 cut(s)	952
DseDI	GACNNNNNNGTC	1 cut(s)	952
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	3 cut(s)	384, 489, 602
Eco147I	AGGCCT	1 cut(s)	978
Eco24I	GRGCYC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	307
EcoRII	CCWGG	5 cut(s)	48, 271, 568, 645, 1017
EcoT14I	CCWWGG	3 cut(s)	384, 489, 602
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	3 cut(s)	384, 489, 602
Esp3I	CGTCTC	1 cut(s)	943
FaeI	CATG	4 cut(s)	326, 698, 818, 841
FaiI	YATR	9 cut(s)	137, 290, 303, 324, 678, 696, 816, 839, 911
FatI	CATG	4 cut(s)	322, 694, 814, 837
FauI	CCCGC	2 cut(s)	259, 772
FblI	GTMKAC	1 cut(s)	819
FokI	GGATG	2 cut(s)	475, 712
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	2 cut(s)	62, 594
GlaI	GCGC	1 cut(s)	935
GsuI	CTGGAG	2 cut(s)	144, 294
HaeIII	GGCC	3 cut(s)	488, 890, 978
HgaI	GACGC	2 cut(s)	925, 955
HhaI	GCGC	1 cut(s)	936
Hin1II	CATG	4 cut(s)	326, 698, 818, 841
Hin6I	GCGC	1 cut(s)	934
HinP1I	GCGC	1 cut(s)	934
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	2 cut(s)	403, 557
HinfI	GANTC	3 cut(s)	263, 389, 629
HphI	GGTGA	4 cut(s)	258, 575, 955, 1073
Hpy166II	GTNNAC	3 cut(s)	566, 586, 820
Hpy188I	TCNGA	5 cut(s)	190, 394, 792, 958, 974
Hpy188III	TCNNGA	4 cut(s)	444, 460, 702, 1030
Hpy8I	GTNNAC	3 cut(s)	566, 586, 820
Hpy99I	CGWCG	3 cut(s)	555, 899, 958
HpyAV	CCTTC	3 cut(s)	469, 478, 488
HpyCH4III	ACNGT	3 cut(s)	772, 811, 899
HpyCH4IV	ACGT	3 cut(s)	316, 667, 862
HpyCH4V	TGCA	8 cut(s)	25, 179, 223, 362, 662, 698, 841, 881
HpyF3I	CTNAG	7 cut(s)	54, 308, 393, 398, 458, 480, 521
HpySE526I	ACGT	3 cut(s)	316, 667, 862
Hsp92II	CATG	4 cut(s)	326, 698, 818, 841
HspAI	GCGC	1 cut(s)	934
Kzo9I	GATC	4 cut(s)	82, 109, 242, 787
LmnI	GCTCC	4 cut(s)	7, 125, 334, 517
LweI	GCATC	2 cut(s)	247, 707
MabI	ACCWGGT	1 cut(s)	568
MaeI	CTAG	2 cut(s)	62, 594
MaeII	ACGT	3 cut(s)	316, 667, 862
MaeIII	GTNAC	5 cut(s)	277, 668, 709, 766, 943
MalI	GATC	4 cut(s)	84, 111, 244, 789
MboI	GATC	4 cut(s)	82, 109, 242, 787
MboII	GAAGA	6 cut(s)	92, 113, 431, 766, 769, 772
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	309, 322
MluCI	AATT	2 cut(s)	372, 500
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	3 cut(s)	396, 838, 936
Mph1103I	ATGCAT	1 cut(s)	700
MseI	TTAA	2 cut(s)	867, 1004
MslI	CAYNNNNRTG	1 cut(s)	836
MspA1I	CMGCKG	2 cut(s)	254, 359
MspR9I	CCNGG	5 cut(s)	50, 273, 570, 647, 1019
MvaI	CCWGG	5 cut(s)	50, 273, 570, 647, 1019
MvnI	CGCG	2 cut(s)	934, 936
NdeII	GATC	4 cut(s)	82, 109, 242, 787
NlaIII	CATG	4 cut(s)	326, 698, 818, 841
NlaIV	GGNNCC	1 cut(s)	651
NmuCI	GTSAC	4 cut(s)	668, 709, 766, 943
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	1 cut(s)	818
PceI	AGGCCT	1 cut(s)	978
PciI	ACATGT	1 cut(s)	814
PfeI	GAWTC	2 cut(s)	263, 629
PflFI	GACNNNGTC	1 cut(s)	949
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Ppu21I	YACGTR	1 cut(s)	668
PscI	ACATGT	1 cut(s)	814
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	5 cut(s)	48, 271, 568, 645, 1017
PspGI	CCWGG	5 cut(s)	48, 271, 568, 645, 1017
PspN4I	GGNNCC	1 cut(s)	651
PstI	CTGCAG	1 cut(s)	664
PstNI	CAGNNNCTG	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	949
RsaI	GTAC	5 cut(s)	60, 133, 666, 813, 930
RsaNI	GTAC	5 cut(s)	59, 132, 665, 812, 929
RseI	CAYNNNNRTG	1 cut(s)	836
SacI	GAGCTC	1 cut(s)	309
SalI	GTCGAC	1 cut(s)	818
SaqAI	TTAA	2 cut(s)	867, 1004
Sau3AI	GATC	4 cut(s)	82, 109, 242, 787
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	5 cut(s)	50, 273, 570, 647, 1019
SduI	GDGCHC	2 cut(s)	309, 322
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	2 cut(s)	247, 707
SfcI	CTRYAG	2 cut(s)	288, 660
SmiMI	CAYNNNNRTG	1 cut(s)	836
Sse9I	AATT	2 cut(s)	372, 500
SseBI	AGGCCT	1 cut(s)	978
SsiI	CCGC	5 cut(s)	252, 269, 357, 779, 932
SspMI	CTAG	2 cut(s)	62, 594
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	978
StyD4I	CCNGG	5 cut(s)	48, 271, 568, 645, 1017
StyI	CCWWGG	3 cut(s)	384, 489, 602
TaaI	ACNGT	3 cut(s)	772, 811, 899
TaiI	ACGT	3 cut(s)	319, 670, 865
TaqI	TCGA	2 cut(s)	443, 819
TasI	AATT	2 cut(s)	372, 500
TatI	WGTACW	2 cut(s)	131, 811
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	263, 629
Tru1I	TTAA	2 cut(s)	867, 1004
Tru9I	TTAA	2 cut(s)	867, 1004
TscAI	CASTG	3 cut(s)	718, 814, 927
TseFI	GTSAC	4 cut(s)	668, 709, 766, 943
Tsp45I	GTSAC	4 cut(s)	668, 709, 766, 943
TspRI	CASTG	3 cut(s)	718, 814, 927
Tth111I	GACNNNGTC	1 cut(s)	949
XceI	RCATGY	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	819
XspI	CTAG	2 cut(s)	62, 594
ZrmI	AGTACT	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.