Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038045.1

Orthogroup ID

OG0022570

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 849

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038045.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggctgagagtaccaaagttctgataccagagacattccagggtgggagtagctttgacattgcaggccaaattgggctgatttgggagctaatcaaagcgccattgatagttcctctgctcagagttggagtctatgtctcactagccatggctctcatgctctttgtggagagggtctacatgggtattgtcattgttttggtcaaaatgttctggaaaaagccagagaagcgctacaactatgagcctattcaggaggatttggaattgggcagttccaattttccggttgtacttgttcaaatccctatgttcaatgaaagagaggtctacaagatctccattggagctgcatgtgggctgtcgtggccgtccgatcgtcttgtgatccaagtcctggatgattcaactgaccctacaatcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3 Glycos_transf_2

Protein Analysis

143

Amino Acids

16.08

Weight (kDa)

4.97

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022570)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g20250
rosa_multiflora	Rmu_sc0030882.1_g000001 Rmu_sc0038044.1_g000001 Rmu_sc0038045.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccI	GTMKAC	2 cut(s)	180, 333
AclWI	GGATC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	371
AfaI	GTAC	2 cut(s)	13, 297
AfeI	AGCGCT	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	3 cut(s)	305, 319, 411
AjnI	CCWGG	2 cut(s)	39, 399
AluBI	AGCT	3 cut(s)	54, 91, 353
AluI	AGCT	3 cut(s)	54, 91, 353
Alw26I	GTCTC	2 cut(s)	26, 145
AlwI	GGATC	1 cut(s)	385
Aor51HI	AGCGCT	1 cut(s)	236
AoxI	GGCC	2 cut(s)	67, 371
ApeKI	GCWGC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	103, 237
BbvI	GCAGC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	358
BciT130I	CCWGG	2 cut(s)	41, 401
BcoDI	GTCTC	2 cut(s)	26, 145
BfaI	CTAG	1 cut(s)	146
BfoI	RGCGCY	2 cut(s)	104, 238
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	41, 401
BmrFI	CCNGG	2 cut(s)	41, 401
BsaJI	CCNNGG	2 cut(s)	40, 150
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	41, 401
BseDI	CCNNGG	2 cut(s)	40, 150
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	340
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	69, 373
BsiEI	CGRYCG	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	2 cut(s)	26, 145
BsnI	GGCC	2 cut(s)	69, 373
Bsp143I	GATC	3 cut(s)	339, 379, 390
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	2 cut(s)	69, 373
BspCNI	CTCAG	1 cut(s)	135
BspPI	GGATC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	40, 150
BssMI	GATC	3 cut(s)	339, 379, 390
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	41, 401
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	6, 122
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	409
BstH2I	RGCGCY	2 cut(s)	104, 238
BstHHI	GCGC	2 cut(s)	103, 237
BstKTI	GATC	3 cut(s)	342, 382, 393
BstMAI	GTCTC	2 cut(s)	26, 145
BstMBI	GATC	3 cut(s)	339, 379, 390
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 370
BstNI	CCWGG	2 cut(s)	41, 401
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	39, 399
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	69, 373
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	2 cut(s)	103, 237
Csp6I	GTAC	2 cut(s)	12, 296
CviAII	CATG	4 cut(s)	151, 160, 184, 357
CviQI	GTAC	2 cut(s)	12, 296
DdeI	CTNAG	2 cut(s)	6, 122
DpnI	GATC	3 cut(s)	341, 381, 392
DpnII	GATC	3 cut(s)	339, 379, 390
EaeI	YGGCCR	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	150
Eco47III	AGCGCT	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	39, 399
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	154, 163, 187, 360
FaiI	YATR	7 cut(s)	138, 152, 161, 185, 246, 314, 358
FatI	CATG	4 cut(s)	150, 159, 183, 356
FblI	GTMKAC	2 cut(s)	180, 333
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	2 cut(s)	102, 236
GluI	GCNGC	1 cut(s)	354
HaeII	RGCGCY	2 cut(s)	104, 238
HaeIII	GGCC	2 cut(s)	69, 373
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	2 cut(s)	103, 237
Hin1II	CATG	4 cut(s)	154, 163, 187, 360
Hin6I	GCGC	2 cut(s)	101, 235
HinP1I	GCGC	2 cut(s)	101, 235
HinfI	GANTC	2 cut(s)	132, 407
HpaII	CCGG	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	181, 334
Hpy188I	TCNGA	3 cut(s)	24, 125, 379
Hpy188III	TCNNGA	2 cut(s)	217, 257
Hpy8I	GTNNAC	2 cut(s)	181, 334
HpyCH4V	TGCA	2 cut(s)	65, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 370
HpyF3I	CTNAG	2 cut(s)	6, 122
Hsp92II	CATG	4 cut(s)	154, 163, 187, 360
HspAI	GCGC	2 cut(s)	101, 235
Kzo9I	GATC	3 cut(s)	339, 379, 390
LmnI	GCTCC	2 cut(s)	88, 350
Lsp1109I	GCAGC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	146
MalI	GATC	3 cut(s)	341, 381, 392
MboI	GATC	3 cut(s)	339, 379, 390
MflI	RGATCY	1 cut(s)	339
MluCI	AATT	3 cut(s)	72, 269, 283
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	126, 168, 253, 322
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	41, 401
MvaI	CCWGG	2 cut(s)	41, 401
MwoI	GCNNNNNNNGC	2 cut(s)	232, 370
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	339, 379, 390
NlaIII	CATG	4 cut(s)	154, 163, 187, 360
NspI	RCATGY	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	400
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	1 cut(s)	355
Ple19I	CGATCG	1 cut(s)	382
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	39, 399
PspGI	CCWGG	2 cut(s)	39, 399
PsuI	RGATCY	1 cut(s)	339
PvuI	CGATCG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	13, 297
RsaNI	GTAC	2 cut(s)	12, 296
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	339, 379, 390
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	41, 401
SetI	ASST	4 cut(s)	56, 93, 333, 355
Sse9I	AATT	3 cut(s)	72, 269, 283
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	39, 399
StyI	CCWWGG	1 cut(s)	150
TasI	AATT	3 cut(s)	72, 269, 283
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	336
Van91I	CCANNNNNTGG	1 cut(s)	400
XceI	RCATGY	1 cut(s)	360
XmiI	GTMKAC	2 cut(s)	180, 333
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.